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ARS Home » Northeast Area » Leetown, West Virginia » Cool and Cold Water Aquaculture Research » Research » Research Project #437692

Research Project: Improving Salmonid Health through Breeding, Vaccination and Microbiome Modulation

Location: Cool and Cold Water Aquaculture Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

qPCR screening for Yersinia ruckeri clonal complex 1 against a background of putatively avirulent strains in Norwegian aquaculture Reprint Icon - (Peer Reviewed Journal)
Riborg, A., Gulla, S., Strand, D., Wiik-Nielsen, J., Ronneseth, A., Welch, T.J., Spilsberg, B., Colquhoun, D.J. 2022. qPCR screening for Yersinia ruckeri clonal complex 1 against a background of putatively avirulent strains in Norwegian aquaculture. Journal of Fish Diseases. https://doi.org/10.1111/jfd.13656.

Aquaculture reuse water, genetic line and vaccination affect Rainbow trout (Oncorhynchus mykiss) disease susceptibility and infection dynamics Reprint Icon - (Peer Reviewed Journal)
Everson, J.L., Jones, D., Taylor, A., Rutan, B., Leeds, T.D., Langwig, K., Wargo, A.R., Wiens, G.D. 2021. Aquaculture reuse water, genetic line and vaccination affect Rainbow trout (Oncorhynchus mykiss) disease susceptibility and infection dynamics. Frontiers in Immunology. 12: Article 721048. https://doi.org/10.3389/fimmu.2021.721048.

Genetic characterization of heterologous Edwardsiella piscicida isolates from diverse fish hosts and virulence assessment in a Chinook salmon Oncorhynchus tshawytscha model Reprint Icon - (Peer Reviewed Journal)
Nguyen, D., López-Porras, A., Marancik, D., Hawkins, L., Welch, T.J., Petty, B., Ware, C., Griffin, M.J., Soto, E. 2021. Genetic characterization of heterologous Edwardsiella piscicida isolates from diverse fish hosts and virulence assessment in a Chinook salmon Oncorhynchus tshawytscha model. Journal of Fish Diseases. 44(12):1959-1970. https://doi.org/10.1111/jfd.13509.

Isolation and characterization of Lactococcus garvieae from rainbow trout, Onchorhyncus mykiss, from California, USA. Reprint Icon - (Peer Reviewed Journal)
Shahin, K., Veek, T., Heckman, T.I., Littman, E., Mukkatira, K., Adkinson, M., Welch, T.J., Imai, D.M., Pastenkos, G., Camus, A., Soto, E. 2021. Isolation and characterization of Lactococcus garvieae from rainbow trout, Onchorhyncus mykiss, from California, USA. Transboundary and Emerging Diseases. https://doi.org/10.1111/tbed.14250.

Draft Genome of Aeromonas popoffii ID682, isolated from a natural water source in Idaho Reprint Icon - (Database / Dataset)
Testman, T., Reichley, S., King, S., Graf, J. 2021. Draft Genome of Aeromonas popoffii ID682, isolated from a natural water source in Idaho. Microbiology Resource Announcements. 10(29): e00445-21. https://doi.org/10.1128/MRA.00445-21.

Draft Genome of Janthinobacterium lividum ID1246, isolated from a rainbow trout hatchery biofilm Reprint Icon - (Database / Dataset)
Testman, T., Reichley, S., King, S., Graf, J. 2021. Draft Genome of Janthinobacterium lividum ID1246, isolated from a rainbow trout hatchery biofilm. Microbiology Resource Announcements. 10:e00444-21. https://doi.org/10.1128/MRA.00444-21.

Detecting Flavobacterial Fish Pathogens in the Environment Using High-Throughput 2 Community Analysis Reprint Icon - (Peer Reviewed Journal)
Testerman, T., Beka, L., Mcclure, E.A., Reichley, S., King, S., Welch, T.J., Graf, J. 2021. Detecting flavobacterial fish pathogens in the environment using high-throughput 2 community analysis. Applied and Environmental Microbiology. 6(21):447745. https://doi.org/10.1101/2021.06.21.447745.

Growth of flavobacterium columnare in TYE with or without supplemented cations Reprint Icon - (Peer Reviewed Journal)
Evenhuis, J., Lipscomb, R.S., Birkett, C. 2021. Growth of flavobacterium columnare in TYE with or without supplemented cations. Current Microbiology. 78: 2474–2480. https://doi.org/10.1007/s00284-021-02507-8.

Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes Reprint Icon - (Peer Reviewed Journal)
Kloub, L., Gosselin, S., Fullmer, M., Graf, J., Gogarten, J., Bansal, M. 2021. Systematic detection of large-scale multigene horizontal transfer in prokaryotes. Molecular Biology and Evolution. 38(6):2639-2659. https://doi.org/10.1093/molbev/msab043.

Virulence variations of flavobacterium columnare in rainbow trout (Oncorhynchus mykiss) eyed eggs and alevin Reprint Icon - (Peer Reviewed Journal)
Evenhuis, J., Lipscomb, R.S., Birkett, C. 2021. Virulence variations of flavobacterium columnare in rainbow trout (Oncorhynchus mykiss) eyed eggs and alevin. Journal of Fish Diseases. 44(5): 533-539. https://doi.org/10.1111/jfd.13343.

Closed Genome Sequence of Aeromonas veronii Strain Hm21, an Isolate from the Medicinal Leech Hirudo verbana Reprint Icon - (Database / Dataset)
Graf, J., Nelson, M.C., Colston, S.M. 2020. Closed Genome Sequence of Aeromonas veronii Strain Hm21, an Isolate from the Medicinal Leech Hirudo verbana. Microbiology Resource Announcements. 9(42): e00922-20. https://doi.org/10.1128/MRA.00922-20.

The type IX secretion system is required for virulence of the fish pathogen Flavobacterium psychrophilum Reprint Icon - (Peer Reviewed Journal)
Barbier, P., Rochat, T., Mohammed, H.H., Wiens, G.D., Bernardet, J., Halpern, D., Duchaud, E., McBride, M.J. 2020. The type IX secretion system is required for virulence of the fish pathogen Flavobacterium psychrophilum. Applied and Environmental Microbiology. AEM.00799-20. https://doi.org/10.1128/AEM.00799-20.

Comparative and Evolutionary Genomics of Isolates Provide Insight into the Pathoadaptation of Aeromonas Reprint Icon - (Peer Reviewed Journal)
Talagrand-Reboul, E., Colston, S.M., Graf, J., Lamy, B., Jumas-Bilak, E. 2020. Comparative and Evolutionary Genomics of Isolates Provide Insight into the Pathoadaptation of Aeromonas. Genome Biology and Evolution. 12(5):535-552. https://doi.org/10.1093/gbe/evaa055.