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ARS Home » Northeast Area » Beltsville, Maryland (BARC) » Beltsville Agricultural Research Center » Soybean Genomics & Improvement Laboratory » Research » Research Project #434471

Research Project: Characterization of Genetic Diversity in Soybean and Common Bean, and Its Application toward Improving Crop Traits and Sustainable Production

Location: Soybean Genomics & Improvement Laboratory

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Genetic architecture of soybean seed and meal protein and oil Reprint Icon - (Peer Reviewed Journal)
Chen, L., Yang, S., Araya, S., Quigley, C.V., Taliercio, E.W., Mian, R.M., Specht, J., Diers, B., Song, Q. 2022. Genetic architecture of soybean seed and meal protein and oil. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-022-04070-7.

Genome-wide association study and genomic prediction for soybean cyst nematode resistance in USDA common bean (Phaseolus vulgaris) core collection Reprint Icon - (Peer Reviewed Journal)
Shi, A., Gepts, P., Song, Q., Xiong, H., Michaels, T.E. 2021. Genome-wide association study and genomic prediction for soybean cyst nematode resistance in USDA common bean (Phaseolus vulgaris) core collection. Frontiers in Plant Science. 12:624156. https://doi.org/10.3389/fpls.2021.624156.

Common bean (Phaseolus vulgaris L.) with increased cysteine and methionine concentration Reprint Icon - (Peer Reviewed Journal)
Viscarra-Torrico, R., Pajak, A., Garzon, A., Zhang, B., Pandurangan, S., Diapari, M., Song, Q., Conner, R.L., House, J.D., Miklas, P.N., Hou, A., Marsolais, F. 2021. Common bean (Phaseolus vulgaris L.) with increased cysteine and methionine concentration. Legume Science. https://doi.org/10.1002/leg3.103.

Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding Reprint Icon - (Peer Reviewed Journal)
Bayer, P.E., Valliyodari, B., Hu, H., Marsh, J., Yuan, Y., Vuong, T.D., Patil, G., Song, Q., Batley, J., Varshney, R.K., Lam, H., Edwards, D., Nguyen, H.T. 2021. Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome. https://doi.org/10.1002/tpg2.20109.

Identification and characterization of novel QTL conferring internal detoxification of aluminium in soybean Reprint Icon - (Peer Reviewed Journal)
Li, Y., Ye, H., Song, L., Vuong, T.D., Song, Q., Zhao, L., Shannon, J., Li, Y., Nguyen, H.T. 2021. Identification and characterization of novel QTL conferring internal detoxification of aluminium in soybean. Journal of Experimental Botany. 72(13):4993-5009. https://doi.org/10.1093/jxb/erab168.

Identification of quantitative disease resistance Loci towards four Pythium species in soybean Reprint Icon - (Peer Reviewed Journal)
Clevinger, E., Biyashev, R., Lerch, E., Yu, H., Quigley, C.V., Song, Q., Dorrance, A., Robertson, A., Maroof, S. 2021. Identification of quantitative disease resistance Loci towards four Pythium species in soybean. Frontiers in Plant Science. 12:514. https://doi.org/10.3389/fpls.2021.644746.

NAC candidate gene marker for bgm-1 and interaction with QTL for resistance to Bean golden yellow mosaic virus in common bean Reprint Icon - (Peer Reviewed Journal)
Soler-Garzon, A., Oladzadabbasabadi, A., Beaver, J., Beebe, S., Lee, R., Lobaton, J., Macea, E., Mcclean, P., Raatz, B., Rosas, J.C., Song, Q., Miklas, P.N. 2021. NAC candidate gene marker for bgm-1 and interaction with QTL for resistance to Bean golden yellow mosaic virus in common bean. Frontiers in Plant Science. 12. Article 628443. https://doi.org/10.3389/fpls.2021.628443.

Development of breeder-friendly KASP markers for low concentration of kunitz trypsin inhibitor in soybean seeds Reprint Icon - (Peer Reviewed Journal)
Rosso, L., Shang, C., Escamilla, D.M., Gillenwater, J., Song, Q., Zhang, B. 2021. Development of breeder-friendly KASP markers for low concentration of kunitz trypsin inhibitor in soybean seeds. International Journal of Molecular Sciences. 22:2675. https://doi.org/10.3390/ijms22052675.

Glycine max NNL1 restricts symbiotic compatibility with widely distributed bradyrhizobia via root hair infection Reprint Icon - (Peer Reviewed Journal)
Zhang, B., Wang, M., Sun, Y., Zhao, P., Liu, C., Qing, K., Hu, X., Zhong, Z., Cheng, J., Wang, H., Pemg, Y., Shi, J., Zhuang, L., Du, S., He, M., Wu, H., Liu, M., Chen, S., Wang, H., Chen, X., Fan, W., Tian, K., Wang, Y., Chen, Q., Wang, S., Dong, F., Yang, C., Zhang, M., Song, Q., Li, Y., Wang, X. 2021. Glycine max NNL1 restricts symbiotic compatibility with widely distributed bradyrhizobia via root hair infection. Nature Plants. 7:73-86. https://doi.org/10.1038/s41477-020-00832-7.

Different loci control resistance to different isolates of the same race of Colletotrichum lindemuthianum in common bean Reprint Icon - (Peer Reviewed Journal)
Costa, L.C., Nalin, R.S., Dias, M.A., Ferreira, M.E., Song, Q., Pastor Corrales, M.A., Hurtado-Gonzales, O.P., Souza, E.A. 2020. Different loci control resistance to different isolates of the same race of Colletotrichum lindemuthianum in common bean. Theoretical and Applied Genetics. 134:543-556. https://doi.org/10.1007/s00122-020-03713-x.

Selection of GmSWEET39 for oil and protein improvement in soybean Reprint Icon - (Peer Reviewed Journal)
Zhang, H., Goettel, W., Song, Q., Jiang, H., Hu, Z., Wang, M.L., An, Y. 2020. Selection of GmSWEET39 for oil and protein improvement in soybean. PLoS Genetics. 16(11):Article e1009114. https://doi.org/10.1371/journal.pgen.1009114.

Evolutionary population structure model reveals pleiotropic effects of GmPDAT for seed oil- and size-related traits in soybean Reprint Icon - (Peer Reviewed Journal)
Liu, J.Y., Zhang, Y.W., Han, X., Zuo, J.F., Zhang, Z.B., Shang, H.H., Song, Q., Zhang, Y.M. 2020. Evolutionary population structure model reveals pleiotropic effects of GmPDAT for seed oil- and size-related traits in soybean. Journal of Experimental Botany. 71(22):6988-7002. https://doi.org/10.1093/jxb/eraa426.

Identification and validation of major QTLs associated with low seed coat deficiency of natto soybean seeds (Glycine max L.) Reprint Icon - (Peer Reviewed Journal)
Zhu, Q., Escamilla, D.M., Wu, X., Song, Q., Li, S., Rosso, L., Lord, N., Xie, F., Zhang, B. 2020. Identification and validation of major QTLs associated with low seed coat deficiency of natto soybean seeds (Glycine max L.). Theoretical and Applied Genetics. 133(1):3165-3176. https://doi.org/10.1007/s00122-020-03662-5.

Soybean BARCSoySNP6K - An assay for soybean genetics and breeding research Reprint Icon - (Peer Reviewed Journal)
Song, Q., Yan, L., Quigley, C.V., Fickus, E.W., Wei, H., Chen, L., Dong, F., Arya, S., Liu, J., Hyten, D., Pantalone, V., Nelson, R.L. 2020. Soybean BARCSoySNP6K - An assay for soybean genetics and breeding research. Plant Journal. https://doi.org/10.1111/tpj.14960.

QTL Mapping of Post-Processing Color Retention in Two Black Bean Populations Reprint Icon - (Peer Reviewed Journal)
Bornowski, N., Song, Q., Kelly, J. 2020. QTL Mapping of Post-Processing Color Retention in Two Black Bean Populations. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-020-03656-3.

New Andean source of resistance to anthracnose and angular leaf spot: fine-mapping of disease-resistance genes in California Dark Red Kidney common bean cultivar Reprint Icon - (Peer Reviewed Journal)
Goncalves-Vidigal, M.C., Gilio, T., Valentini, G., Vaz-Bisneta, M., Vidigal Filho, P.S., Song, Q., Oblessuc, P.R., Melotto, M. 2020. New Andean source of resistance to anthracnose and angular leaf spot: fine-mapping of disease-resistance genes in California Dark Red Kidney common bean cultivar. PLoS One. 15(6):e0235215. https://doi.org/10.1371/journal.pone.0235215.

Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism Reprint Icon - (Peer Reviewed Journal)
Rambani, A., Pantalone, V., Yang, S., Rice, H., Song, Q., Mazarei, M., Arelli, P.R., Meksem, K., Stewart, N., Hewezi, T. 2020. Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism. New Phytologist. https://doi.org/10.1111/nph.16511.

Toward validation of QTLs associated with pod and seed size in common bean using two nested recombinant inbred line populations Reprint Icon - (Peer Reviewed Journal)
Murube, E., Campa, A., Song, Q., Mcclean, P., Ferreira, J.J. 2019. Toward validation of QTLs associated with pod and seed size in common bean using two nested recombinant inbred line populations. Molecular Breeding. 40:7. https://doi.org/10.1007/s11032-019-1085-1.

Natural variation in Portuguese common bean germplasm reveals new sources of resistance against Fusarium oxysporum f. sp. phaseoli and resistance-associated candidate genes - (Peer Reviewed Journal)
Leitao, S., Malosetti, M., Song, Q., Eeuwijk, F., Rubiales, D., Patto, M. 2020. Natural variation in Portuguese common bean germplasm reveals new sources of resistance against Fusarium oxysporum f. sp. phaseoli and resistance-associated candidate genes. Phytopathology. 110(3):663-647.

Genome wide association study and genomic selection of amino acid concentrations in soybean seeds Reprint Icon - (Peer Reviewed Journal)
Qin, J., Shi, A., Song, Q., Li, S., Wang, F., Cao, Y., Ravelombola, W., Yang, C., Zhang, M. 2019. Genome wide association study and genomic selection of amino acid concentrations in soybean seeds. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2019.01445.

Genomic selection for yield and seed composition traits within an applied soybean breeding program Reprint Icon - (Peer Reviewed Journal)
Stewart-Brown, B.B., Song, Q., Vaughn, J., Li, Z. 2019. Genomic selection for yield and seed composition traits within an applied soybean breeding program . G3, Genes/Genomes/Genetics. https://doi.org/10.1534/g3.118.200917.

Physiological and QTL analysis of slow canopy wilting trait for improvement of drought tolerance in soybean Reprint Icon - (Peer Reviewed Journal)
Ye, H., Song, L., Schapaugh, W.T., Ali, L., Riar, M.K., Raymond, R.N., Li, Y., Vuong, T., Valliyodan, B., Neto, A.P., Klepadlo, M., Song, Q., Shannon, G.J., Pengyin, C., Nguyen, H.T. 2019. Physiological and QTL analysis of slow canopy wilting trait for improvement of drought tolerance in soybean. G3, Genes/Genomes/Genetics. https://doi.org/10.1093/jxb/erz150.

Different loci associated with root and foliar resistance to sudden death syndrome (Fusarium virguliforme) in soybean Reprint Icon - (Peer Reviewed Journal)
Tan, R., Collins, P.J., Wang, J., Wen, Z., Boyse, J.F., Laurenz, R., Gu, C., Jacobs, J.L., Song, Q., Chilvers, M.I., Wang, D. 2018. Different loci associated with root and foliar resistance to sudden death syndrome (Fusarium virguliforme) in soybean. Theoretical and Applied Genetics. 132:501-513. https://doi.org/10.1007/s00122-018-3237-9.