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ARS Home » Plains Area » College Station, Texas » Southern Plains Agricultural Research Center » Crop Germplasm Research » Research » Research Project #434423

Research Project: Advanced Genomic and Bioinformatic Tools for Accelerated Cotton Genetic Improvement

Location: Crop Germplasm Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Improved reconstruction and comparative analysis of chromosome 12 to rectify mis-assemblies in Gossypium arboreum Reprint Icon - (Peer Reviewed Journal)
Ashraf, J., Zuo, D., Cheng, H., Malik, W., Wang, Q., Zhang, Y., Abid, M., Yang, Q., Feng, X., Yu, J., Song, G. 2020. Improved reconstruction and comparative analysis of chromosome 12 to rectify mis-assemblies in Gossypium arboreum. Biomed Central (BMC) Genomics. 21: Article 470. https://doi.org/10.1186/s12864-020-06814-5.

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution Reprint Icon - (Peer Reviewed Journal)
Huang, G., Wu, Z., Percy, R.G., Bai, M., Li, Y., Frelichowski, J.E., Hu, J., Wang, K., Yu, J., Zhu, Y. 2020. Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution. Nature Genetics. https://doi.org/10.1038/s41588-020-0607-4.

The Gossypium longicalyx genome as a resource for cotton breeding and evolution Reprint Icon - (Peer Reviewed Journal)
Grover, C.E., Pan, M., Yuan, D., Arick, M.A., Hu, G., Brase, L., Stelly, D.M., Lu, Z., Schmitz, R.J., Peterson, D.G., Wendel, J.F., Udall, J.A. 2020. The Gossypium longicalyx genome as a resource for cotton breeding and evolution. Genes, Genomes, Genetics. 10:1457-1467. https://doi.org/10.1534/g3.120.401050.

Cotton roots are the major source of gossypol biosynthesis and accumulation Reprint Icon - (Peer Reviewed Journal)
Zhao, T., Xie, Q., Li, C., Li, C., Mei, L., Yu, J., Chen, J., Zhu, S. 2020. Cotton roots are the major source of gossypol biosynthesis and accumulation. Biomed Central (BMC) Plant Biology. 20:88. https://doi.org/10.1186/s12870-020-2294-9.

Exploiting genetic variation of Gossypium gene pools for cotton improvement - (Abstract Only)
Yu, J., Frelichowski, J.E., Hinze, L.L., Udall, J.A. 2020. Exploiting genetic variation of Gossypium gene pools for cotton improvement [abstract]. Plant and Animal Genome Conference, January 11-15, 2020, San Diego, California. W820.

The genome sequence of Gossypioides kirkii illustrates a descending dysploidy in plants Reprint Icon - (Peer Reviewed Journal)
Udall, J.A., Long, E., Ramaraj, T., Conover, J.L., Yuan, D., Grover, C.E., Gong, L., Arick, M.A., Masonbrink, R.E., Peterson, D.G., Wendel, J.F. 2019. The genome sequence of Gossypioides kirkii illustrates a descending dysploidy in plants. Frontiers in Plant Science. 10:1541. https://doi.org/10.3389/fpls.2019.01541.

De novo genome assemblies of Gossypium raimondii and G. turneri Reprint Icon - (Peer Reviewed Journal)
Udall, J.A., Long, E., Hanson, C., Yuan, D., Ramaraj, T., Conover, J.L., Gong, L., Arick, M.A., Grover, C.E., Peterson, D.G., Wendel, J.F. 2019. De novo genome assemblies of Gossypium raimondii and G. turneri. G3, Genes/Genomes/Genetics. 9(10):3079-3085. https://doi.org/10.1534/g3.119.400392.

Transcriptome analysis reveals cotton (Gossypium hirsutum) genes that are differentially expressed in cadmium (Cd) stress tolerance Reprint Icon - (Peer Reviewed Journal)
Han, M., Lu, X., Yu, J., Chen, X., Wang, X., Malik, W., Wang, J., Wang, D., Wang, S., Guo, L., Chen, C., Cui, R., Yang, X., Ye, W. 2019. Transcriptome analysis reveals cotton (Gossypium hirsutum) genes that are differentially expressed in cadmium (Cd) stress tolerance. International Journal of Molecular Sciences. 20(6):1479. https://doi.org/10.3390/ijms20061479.

Genomic analysis of marker-associated fiber development genes in Upland cotton (Gossypium hirsutum L) Reprint Icon - (Peer Reviewed Journal)
Yu, J., Gervers, K. 2019. Genomic analysis of marker-associated fiber development genes in Upland cotton (Gossypium hirsutum L). Euphytica. 215:74. https://doi.org/10.1007/s10681-019-2388-3.