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ARS Home » Southeast Area » Houma, Louisiana » Sugarcane Research » Research » Research Project #434376

Research Project: Genetic Improvement of Sugarcane for Adaptation to Temperate Climates

Location: Sugarcane Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Population structure and genetic diversity analysis in sugarcane (Saccharum spp. hybrids) and six related Saccharum species Reprint Icon - (Peer Reviewed Journal)
Xiong, H., Chen, Y., Gao, S., Pan, Y., Shi, A. 2022. Population structure and genetic diversity analysis in sugarcane (Saccharum spp. hybrids) and six related Saccharum species. Agronomy. 12(2):412;1-15. https://doi.org/10.3390/agronomy12020412.

SSR-based molecular identification and population structure analysis for the Yunrui-series sugarcane (Saccharum spp. hybrids) genotypes Reprint Icon - (Peer Reviewed Journal)
Tian, C., Zhu, J., Pan, Y., Lu, X., Dong, L., Burner, D.M., Tao, L., Wu, C., Jing, Y. 2022. SSR-based molecular identification and population structure analysis for the Yunrui-series sugarcane (Saccharum spp. hybrids) genotypes. Sugar Tech. 1:1-13. https://doi.org/10.1007/s12355-021-01099-8.

Utilization of a sugarcane100K Single Nucleotide Polymorphisms microarray-derived high-density genetic map in Quantitative Trait Loci mapping and function role prediction of genes related to chlorophyll content in sugarcane Reprint Icon - (Peer Reviewed Journal)
Lu, G., Pan, Y.-B., Wang, Z., Xu, F., Cheng, W., Huang, X., Ren, H., Pang, C., Que, Y., Xu, L. 2021. Utilization of a sugarcane100K Single Nucleotide Polymorphisms microarray-derived high-density genetic map in Quantitative Trait Loci mapping and function role prediction of genes related to chlorophyll content in sugarcane. Frontiers in Plant Science. 12:Article 817875. https://doi.org/10.3389/fpls.2021.817875.

Analysis of sugarcane genotype by environment yield in the Rio Grande Valley of Texas - (Abstract Only)

Sugarcane mosaic disease: characteristics, identification and control Reprint Icon - (Peer Reviewed Journal)
Lu, G., Wang, Z., Xu, F., Pan, Y.-B., Grisham, M.P., Xu, L. 2021. Sugarcane mosaic disease: characteristics, identification and control. Microorganisms. 9(9), 1984:1-20. https://doi.org/10.3390/microorganisms9091984.

Prediction of ratoon sugarcane family yield and selection using remote imagery Reprint Icon - (Peer Reviewed Journal)
Todd, J.R., Johnson, R.M. 2021. Prediction of ratoon sugarcane family yield and selection using remote imagery. Agronomy. 11(7):Article 1273. https://doi.org/10.3390/agronomy11071273.

Release of ‘HoCP 14-885’ sugarcane - (Abstract Only)

Analysis of sugarcane genotype by environment yield in the Rio Grande Valley of Texas using GGE biplot - (Abstract Only)

A report on the 2019 outfield variety trials - (Trade Journal)

Registration of ‘Ho 07-613’ Sugarcane Reprint Icon - (Peer Reviewed Journal)
Hale, A.L., Todd, J.R., Pan, Y., Tew, T.L., Veremis, J.C., White, W.H., Dufrene Jr, E.O., Grisham, M.P., Gravois, K.A., Jackson, W.R., Dalley, C.D., Spaunhorst, D.J., Duet Jr, M.J., Landry, C.J., Verdun, D.L. 2022. Registration of ‘Ho 07-613’ Sugarcane. Journal of Plant Registrations. pages 1-12. https://doi.org/10.1002/plr2.20163.

Occurrence of two races of Puccinia kuehnii causing orange rust of sugarcane in Florida Reprint Icon - (Peer Reviewed Journal)
Sanjel, S., Hincapie, M., Wang, Y., Todd, J.R., Chaulagain, B., Sood, S.G., Comstock, J.C., Raid, R.N., Rott, P. 2021. Occurrence of two races of Puccinia kuehnii causing orange rust of sugarcane in Florida. Plant Pathology. 00:1-10. https://doi.org/10.1111/ppa.13405.

Registration of ‘Ho 11-573’ sugarcane Reprint Icon - (Peer Reviewed Journal)
Todd, J.R., Hale, A.L., Pan, Y., Tew, T.L., Dufrene Jr, E.O., Duet Jr, M.J., Verdun, D.L., Landry, C.J., Grisham, M.P., Kimbeng, C., Gravois, K.A., Bischoff, K.P., Pontif, M.J., Jackson, W.R., Waguespack Jr, H.L., Davidson, W., Scott Jr, A.W., Hernandez, E., Klostermann, M., Nuessly, G.S., White, W.H., Richard, R.T. 2021. Registration of ‘Ho 11-573’ sugarcane. Journal of Plant Registrations. 15:463-470. https://doi.org/10.1002/plr2.20153.

2020 Louisiana variety development program infield trials - (Experiment Station)

2020 Louisiana variety development program infield trials - (Experiment Station)

Sugarcane breeding programs in the USA Reprint Icon - (Peer Reviewed Journal)
Hale, A.L., Todd, J.R., Gravois, K.A., Mollov, D.S., Malapi-Wight, M., Momotaz, A., Laborde, C., Goenaga, R.J., Solis, A., Waguespack, H. 2021. Sugarcane breeding programs in the USA. Sugar Tech. 24(1):97-111. https://doi.org/10.1007/s12355-021-01018-x.

Data mining sugarcane breeding yield data for ratoon yield prediction Reprint Icon - (Peer Reviewed Journal)
Todd, J.R., Dufrene Jr, E.O., Waguespack, H., Kimbeng, C., Pontif, M., Boykin, D.L. 2021. Data mining sugarcane breeding yield data for ratoon yield prediction. Euphytica. 217:54. https://doi.org/10.1007/s10681-021-02786-z.

Identification of quantitative trait loci (QTL) controlling fiber content of sugarcane (Saccharum hybrids spp.) Reprint Icon - (Peer Reviewed Journal)
Islam, M.S., Pan, Y.-B., Lomax, L.E., Grisham, M.P. 2021. Identification of quantitative trait loci (QTL) controlling fiber content of sugarcane (Saccharum hybrids spp.). Plant Breeding. 140(2):360-366. https://doi.org/10.1111/pbr.12912.

Registration of ‘L 11-183’ sugarcane Reprint Icon - (Peer Reviewed Journal)
Pontif, M.J., Kimbeng, C.A., Bischoff, K.P., Gravois, K.A., LaBorde, C.M., Hawkins, G.L., Sexton, D.R., Hoy, J.W., Baisakh, N.E., Wilson, B.E., Orgeron, A., Todd, J.R., Waguespack, H.L. 2021. Registration of ‘L 11-183’ sugarcane. Journal of Plant Registrations. 15:447-462. https://doi.org/10.1002/plr2.20136.

Ratoon family selection using remote sensing - (Abstract Only)

Registration of ‘Ho 05-961’ sugarcane Reprint Icon - (Peer Reviewed Journal)
Todd, J.R., Hale, A.L., Pan, Y., Tew, T.L., White, W.H., Dufrene Jr, E.O., Duet Jr, M.J., Verdun, D.L., Spaunhorst, D.J., Dalley, C., Grisham, M.P., Wilson, B.E., Gravois, K.A., Jackson, W.R. 2022. Registration of ‘Ho 05-961’ sugarcane. Journal of Plant Registrations. pgs. 1-10. https://doi.org/10.1002/plr2.20100.

Subcellular localization of the D27 protein in sugarcane (Saccharum hybrids spp.) using an optimized protoplast isolation, purification, and transient gene expression protocol Reprint Icon - (Peer Reviewed Journal)
Wu, Z., Hu, X., Zan, F., Pan, Y.-B., Burner, D.M., Luo, Z., Liu, J., Zhao, L., Yao, L., Zhao, Y., Liu, X., Xia, H., Yang, K., Zhao, J., Zhao, P., Qin, W., Chen, X., Wu, C. 2020. Subcellular localization of the D27 protein in sugarcane (Saccharum hybrids spp.) using an optimized protoplast isolation, purification, and transient gene expression protocol. Sugar Tech. 23(2):316-325. https://doi.org/10.1007/s12355-020-00879-y.

An enriched sugarcane diversity panel for utilization in genetic improvement of sugarcane Reprint Icon - (Peer Reviewed Journal)
Ficket, N., Ebrahimi, L., Parco, A., Hale, A.L., Gutierrez, A.V., Pontif, M.J., Todd, J.R., Kimbeng, C.A., Hoy, J.W., Ayala Silva, T., Gravois, K.A., Baisakh, N. 2020. An enriched sugarcane diversity panel for utilization in genetic improvement of sugarcane. Scientific Reports. 10:1-13. https://doi.org/10.1038/s41598-020-70292-8.

Measurement of the variability of brix along sugarcane stalk - (Abstract Only)

Cultivar-specific SSR markers as revealed through fluorescence- labeling and capillary electrophoresis in sugarcane (Saccharum hybrids spp.) - (Peer Reviewed Journal)
Luzaran, R.T., Pan, Y.-B. 2020. Cultivar-specific SSR markers as revealed through fluorescence- labeling and capillary electrophoresis in sugarcane (Saccharum hybrids spp.). Philippine Journal of Crop Science. 45(2):47-57.

Genome-wide analysis of the trehalose-6-phosphate synthase (TPS) gene family and expression profiling of ScTPS genes in sugarcane Reprint Icon - (Peer Reviewed Journal)
Hu, X., Wu, Z., Luo, Z., Burner, D., Pan, Y.-B., Wu, C. 2020. Genome-wide analysis of the trehalose-6-phosphate synthase (TPS) gene family and expression profiling of ScTPS genes in sugarcane. Agronomy Journal. 10(7):969. https://doi.org/10.3390/agronomy10070969.

Multivariate analysis of 31 phenotypic traits among major parental lines of sugarcane breeding programs in China Reprint Icon - (Peer Reviewed Journal)
Wu, J., Wang, Q., Pan, Y., Zie, J., Zhou, F., Xu, H., Qiu, Y., Liu, Z. 2021. Multivariate analysis of 31 phenotypic traits among major parental lines of sugarcane breeding programs in China. The Journal of Animal and Plant Sciences. 31(3):719-732. https://doi.org/10.36899/JAPS.2021.3.0262.

Genetic variation within and among lowland switchgrass cultivars as revealed with AFLP polymorphisms Reprint Icon - (Peer Reviewed Journal)
Makaju, S.O., Wu, Y., Anderson, M.P., Kakani, V.G., Smith, M., Todd, J.R., Adhikari, L. 2020. Genetic variation within and among lowland switchgrass cultivars as revealed with AFLP polymorphisms. Global Journal of Agricultural and Allied Sciences. 2(1):11-17. https://doi.org/10.35251/gjaas.2020.002.

2019 Louisiana variety development program infield trials - (Experiment Station)

2019 Louisiana “Ho” nursery variety trials - (Experiment Station)

Fidelity of sugarcane crosses assessed with SSR markers Reprint Icon - (Peer Reviewed Journal)
Todd, J.R., Pan, Y.-B., Boykin, D.L. 2020. Fidelity of sugarcane crosses assessed with SSR markers. Agronomy. 10(3):1-18. http://doi.org/10.3390/agronomy10030386.

SSR-based genetic identity of sugarcane clones and its potential application in breeding and variety extension Reprint Icon - (Peer Reviewed Journal)
Wang, Z., Pan, Y.-B., Luo, J., You, Q., Xu, L., Zhang, H., Que, Y. 2020. SSR-based genetic identity of sugarcane clones and its potential application in breeding and variety extension. Sugar Tech. 22(3):367-378. https://doi.org/10.1007/s12355-019-00788-9.

Genomic selection: A new marker-assisted breeding tool to facilitate Louisiana sugarcane variety development - (Trade Journal)
Baisakh, N., Kimbeng, C., Pontiff, M., Hoy, J., Gravois, K., Hale, A.L., Todd, J.R. 2020. Genomic selection: A new marker-assisted breeding tool to facilitate Louisiana sugarcane variety development. Sugar Bulletin. 98(4):23-25.

Evaluation of susceptibility to mosaic in Louisiana's sugarcane breeding program - (Peer Reviewed Journal)
Rice, J.L., Hoy, J.W., Hale, A.L., Todd, J.R., Grisham, M.P., Kimbeng, C.A., Pontif, M.J. 2019. Evaluation of susceptibility to mosaic in Louisiana's sugarcane breeding program. Journal of the American Society of Sugar Cane Technologists. 39:1-11.

Phenotypic and molecular characterization of a core collection of Saccharum spontaneum L. in China Reprint Icon - (Peer Reviewed Journal)
Xu, C., Liu, X., Burner, D.M., Abbas, Z., Pan, Y.-B., Elgamal, I.S., Lu, X., Su, H. 2020. Phenotypic and molecular characterization of a core collection of Saccharum spontaneum L. in China. Sugar Tech. 22(1):76–88. https://doi.org/10.1007/s12355-019-00761-6.

SSR marker-assisted management of parental germplasm in sugarcane (Saccharum spp. hybrids) breeding programs Reprint Icon - (Peer Reviewed Journal)
Wu, J., Wang, Q., Xie, J., Pan, Y.-B., Zhou, F., Guo, Y., Chang, H., Xu, H., Zhang, W., Zhang, C., Qiu, Y. 2019. SSR marker-assisted management of parental germplasm in sugarcane (Saccharum spp. hybrids) breeding programs. Agronomy Journal. 9(8):449. https://doi.org/10.3390/agronomy9080449.

A report on the 2019 outfield variety trials - (Trade Journal)

Notice of release of sugarcane variety Ho 12-615 - (Trade Journal)
Todd, J.R., Hale, A.L., Dufrene Jr, E.O., White, W.H., Tew, T.L., Grisham, M.P., Kimbeng, C., Duet Jr, M.J., Verdun, D.L., Waguespack, H., Pan, Y.-B., Gravois, K.A. 2019. Notice of release of sugarcane variety Ho 12-615. Sugar Bulletin. 97(8):17-18.

Prediction of sugarcane yield by machine learning - (Abstract Only)
Todd, J.R., Dufrene Jr, E.O., Pontiff, M. 2019. Prediction of sugarcane yield by machine learning [abstract]. Journal American Society of Sugar Cane Technologists. 39:43.

Identifying loci controlling fiber composition in polyploid sugarcane (Saccharum spp.) through genome-wide association study Reprint Icon - (Peer Reviewed Journal)
Yang, X., Todd, J.R., Arundale, R., Binder, J., Luo, Z., Islam, M.S., Sood, S.G., Wang, J. 2019. Identifying loci controlling fiber composition in polyploid sugarcane (Saccharum spp.) through genome-wide association study. Industrial Crops and Products. 130:598-605. https://doi.org/10.1016/j.indcrop.2019.01.023.

Genome-wide association mapping identifies markers associated with cane yield components and sucrose traits in the Louisiana sugarcane core collection Reprint Icon - (Peer Reviewed Journal)
Fickett, N., Gutierrez, A., Verma, M., Pontif, M., Hale, A.L., Kimbeng, C., Baisakh, N. 2018. Genome-wide association mapping identifies markers associated with cane yield components and sucrose traits in the Louisiana sugarcane core collection. Genomics. Available: https://doi.org/10.1016/j.ygeno.2018.12.002.