Research Project: Biology, Ecology, and Genomics of Pathogenic and Beneficial Microorganisms of Wheat, Barley, and Biofuel Brassicas

Location: Wheat Health, Genetics, and Quality Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Occurrence of mummy berry associated with huckleberry (Vaccinium membranaceum) caused by Monilinia spp. in Oregon - (Peer Reviewed Journal)
Hagerty, C., Gardner, S., Kroese, D.R., Yin, C., Paulitz, T.C., Pscheidt, J.W. 2022. Occurrence of mummy berry associated with huckleberry (Vaccinium membranaceum) caused by Monilinia spp. in Oregon. Plant Disease. 106(2):357-359. https://doi.org/10.1094/PDIS-04-21-0691-SC.

Specific metabolites drive the deterministic assembly of diseased rhizosphere microbiome through weakening microbial degradation of autotoxin - (Peer Reviewed Journal)
Wen, T., et al. Specific metabolites drive the deterministic assembly of diseased rhizosphere microbiome through weakening microbial degradation of autotoxin. Microbiome. (2022)10. Article 177. https://doi.org/10.1186/s40168-022-01375-z.

Monitoring of host suitability and defense-related genes in wheat to Bipolaris sorokiniana - (Peer Reviewed Journal)
Alkan, M., Bayraktar, H., Imren, M., Ozdemir, F., Lahlali, R., Mokrini, F., Paulitz, T.C., Dababat, A.A., Ozer, G. 2022. Monitoring of host suitability and defense-related genes in wheat to Bipolaris sorokiniana. The Journal of Fungi. 8(2). Article 149. https://doi.org/10.3390/jof8020149.

Interactions among cereal cyst nematode Heterodera filipjevi, dryland crown rot Fusarium culmorum, and drought on grain yield components and disease severity in bread wheat - (Peer Reviewed Journal)
Ahmadi, M., Mirakhorli, N., Erginbas-Orakci, G., Ansari, O., Braun, H., Paulitz, T.C., Dababat, A. 2022. Interactions among cereal cyst nematode Heterodera filipjevi, dryland crown rot Fusarium culmorum, and drought on grain yield components and disease severity in bread wheat. Canadian Journal of Plant Pathology. 44(3):415-431. https://doi.org/10.1080/07060661.2021.2013947.

Pythium Protocols - (Peer Reviewed Journal)

Glutamic acid reshapes the plant microbiota to protect plants against pathogens - (Peer Reviewed Journal)
Kim, D., Jeon, C., Cho, G., Thomashow, L.S., Weller, D.M., Paik, M., Lee, Y., Kwak, Y. 2021. Glutamic acid reshapes the plant microbiota to protect plants against pathogens. Microbiome. 9. Article 244. https://doi.org/10.1186/s40168-021-01186-8.

Proteome-wide response of dormant caryopses of the weed, Avena fatua, after colonization by a seed-decay isolate of Fusarium avenaceum - (Peer Reviewed Journal)
Lewis, R.W., Okubara, P.A., Sullivan, T.S., Madden, B.J., Johnson, K.L., Charlesworth, C.M., Fuerst, E.P. 2022. Proteome-wide response of dormant caryopses of the weed, Avena fatua, after colonization by a seed-decay isolate of Fusarium avenaceum. Phytopathology. 112(5):1103-1117. https://doi.org/10.1094/PHYTO-06-21-0234-R.

Occurrence of eyespot of cereals in Tunisia and identification of Oculimacula species and mating types - (Peer Reviewed Journal)
Gargouri, S., Bouatrous, A., Murray, T.D., Paulitz, T.C., Khemir, E., Souissi, A., Chekali, S., Burgess, L.W. 2022. Occurrence of eyespot of cereals in Tunisia and identification of Oculimacula species and mating types. Canadian Journal of Plant Pathology. 44(3):345-353. https://doi.org/10.1080/07060661.2021.1995501.

Growth inhibition of Botrytis cinerea by native vineyard yeasts from Puget Sound, Washington State, USA - (Peer Reviewed Journal)
Nevada, S.S., Lupien, S.L., Watson, B., Okubara, P.A. 2021. Growth inhibition of Botrytis cinerea by native vineyard yeasts from Puget Sound, Washington State, USA. Journal of Biology and Nature. 13(1):42-53. https://www.ikprress.org/index.php/JOBAN/article/view/6534.

First report of crown rot caused by fusarium redolens on wheat in Kazakhstan - (Peer Reviewed Journal)
Bozoglu, T., Ozer, G., Imren, M., Paulitz, T.C., Dabaat, A.A. 2021. First report of crown rot caused by fusarium redolens on wheat in Kazakhstan. Plant Disease. https://doi.org/10.1094/PDIS-01-21-0015-PDN.

Native yeast and non-yeast fungal communities of Cabernet Sauvignon berries from two Washington State vineyards, and persistence in spontaneous fermentation - (Peer Reviewed Journal)
Wang, X., Schlatter, D.C., Glawe, D.A., Edwards, C.G., Weller, D.M., Paulitz, T.C., Abatzoglou, J.T., Okubara, P.A. 2021. Native yeast and non-yeast fungal communities of Cabernet Sauvignon berries from two Washington State vineyards, and persistence in spontaneous fermentation. International Journal of Food Microbiology. 350. Article 109225. https://doi.org/10.1016/j.ijfoodmicro.2021.109225.

Responses of soil fungal communities to lime application in wheat fields in the Pacific Northwest - (Peer Reviewed Journal)
Yin, C., Schlatter, D.C., Kroese, D., Paulitz, T.C., Hagerty, C. 2021. Responses of soil fungal communities to lime application in wheat fields in the Pacific Northwest. Frontiers in Microbiology. 12. Article 576673. https://doi.org/10.3389/fmicb.2021.576763.

Reaction of winter wheat and barley cultivars to Fusarium pseudograminearum inoculated fields, 2018 and 2019. - (Peer Reviewed Journal)
Hagerty, C., Lutcher, L., Mclaughlin, K.R., Hayes, P., Garland Campbell, K.A., Paulitz, T.C., Graebner, R.C., Kroese, D.R. 2021. Reaction of winter wheat and barley cultivars to Fusarium pseudograminearum inoculated fields, 2018 and 2019. . Agrosystems, Geosciences & Environment. 4(2). Article e20173. https://doi.org/10.1002/agg2.20173.

Rhizosphere plant-microbe interactions under water stress - (Peer Reviewed Journal)
Bhattacharyya, A., Pablo, C.D., Mavrodi, O.V., Weller, D.M., Thomashow, L.S., Mavrodi, D.V. 2021. Rhizosphere plant-microbe interactions under water stress. Advances in Applied Microbiology. https://doi.org/10.1016/bs.aambs.2021.03.001.

Rhizosphere plant-microbe interactions under water stress - (Literature Review)
Bhattacharyya, A., Pablo, C.D., Mavrodi, O.V., Weller, D.M., Thomashow, L.S., Mavrodi, D.V. 2021. Rhizosphere plant-microbe interactions under water stress . Advances in Applied Microbiology. 115,2021,65-113. https://doi.org/10.1016/bs.aambs.2021.03.001.

Evaluation of the phytotoxicity of 2,4-Diacetylphloroglucinol and Pseudomonas brassicacearum Q8r1-96 on different wheat cultivars - (Peer Reviewed Journal)
Yang, M., Thomashow, L.S., Weller, D.M. 2021. Evaluation of the phytotoxicity of 2,4-Diacetylphloroglucinol and Pseudomonas brassicacearum Q8r1-96 on different wheat cultivars. Phytopathology. https://doi.org/10.1094/phyto-07-20-0315-R.

Plant-parasitic nematode communities associated with wheat-growing areas in central, eastern, and south-eastern Kazakhstan - (Peer Reviewed Journal)
Imren, M., Ozer, G., Paulitz, T.C., Morgounov, A., Dababat, A.A. 2021. Plant-parasitic nematode communities associated with wheat-growing areas in central, eastern, and south-eastern Kazakhstan. Plant Disease. https://doi.org/10.1094/PDIS-11-20-2424-SR.

Functional analysis of phenazine biosynthesis genes in Burkholderia spp. - (Peer Reviewed Journal)
Hendry, S., Steinke, S., Wittstein, K., Adewunmi, Y., Sahukhal, G., Elasri, M., Thomashow, L.S., Weller, D.M., Mavrodi, O., Blankenfeldt, W., Mavrodi, D. 2021. Functional analysis of phenazine biosynthesis genes in Burkholderia spp.. Applied and Environmental Microbiology. 87. Article e02348-20. https://doi.org/10.1128/AEM.02348-20.

The effect of root exudates on the transcriptome of rhizosphere Pseudomonas spp. - (Peer Reviewed Journal)
Mavrodi, O.V., McWilliams, J.R., Peter, J.O., Berim, A., Hassan, K.A., Elbourne, L.D., LeTourneau, M., Gang, D.R., Paulsen, I.T., Weller, D.M., Thomashow, L.S., Flynt, A.S., Mavrodi, D.V. 2021. The effect of root exudates on the transcriptome of rhizosphere Pseudomonas spp.. Frontiers in Microbiology. 12. Article 651282. https://doi.org/10.3389/fmicb.2021.651282.

Soil and climatic factors that affect communities of plant-parasitic nematodes in organic vegetables in the Argan Biosphere of Souss-Massa region (Southern Morocco) - (Peer Reviewed Journal)
Filali Alaoui, I., Ait Hamza, M., Benjlil, H., Idhmida, A., Mzough, E., Furze, J., Hallouti, A., Basaid, K., Zasada, I.A., Paulitz, T.C., Ferji, Z., El Mousadik, A., Mayad, E. 2021. Soil and climatic factors that affect communities of plant-parasitic nematodes in organic vegetables in the Argan Biosphere of Souss-Massa region (Southern Morocco). Environmental Science and Pollution Research. https://doi.org/10.1007/s11356-021-12986-8.

Wheat rhizosphere community selection reveals bacteria associated with reduced root disease - (Peer Reviewed Journal)
Yin, C., Vargas, J.M., Schlatter, D.C., Hagerty, C., Hulbert, S., Paulitz, T.C. 2021. Wheat rhizosphere community selection reveals bacteria associated with reduced root disease. Microbiome. 9. Article 86. https://doi.org/10.1186/s40168-020-00997-5.

Potential of Moroccan entomopathogenic nematodes for the control of the Mediterranean fruit fly Ceratitis capitata Wiedemann (Diptera: Tephritidae) - (Peer Reviewed Journal)
Mokrini, F., Laasli, S., Benseddik, Y., Joutei, A.B., Blenzar, A., Lakhal, H., Sbaghi, M., Imren, M., Ozer, G., Paulitz, T.C., Lahlali, R., Dababat, A.A. 2021. Potential of Moroccan entomopathogenic nematodes for the control of the Mediterranean fruit fly Ceratitis capitata Wiedemann (Diptera: Tephritidae). Scientific Reports. 10. Article 19204. https://doi.org/10.1038/s41598-020-76170-7.

Bacterial communities of soil and earthworm casts of native Palouse Prairie remnants and no-till wheat cropping systems - (Peer Reviewed Journal)
Schlatter, D.C., Baugher, C., Kahl, K., Johnson-Maynard, J.L., Huggins, D.R., Paulitz, T.C. 2019. Bacterial communities of soil and earthworm casts of native Palouse Prairie remnants and no-till wheat cropping systems. Soil Biology and Biochemistry. 139. https://doi.org/10.1016/j.soilbio.2019.107625.

Purinoceptor P2K1/DORN1 enhances plant resistance against a soilborne fungal pathogen, Rhizoctonia solani - (Peer Reviewed Journal)
Kumar, S., Tripathi, D., Okubara, P.A., Tanaka, K. 2020. Purinoceptor P2K1/DORN1 enhances plant resistance against a soilborne fungal pathogen, Rhizoctonia solani. Frontiers in Plant Science. 11. https://doi.org/10.3389/fpls.2020.572920.

Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes - (Peer Reviewed Journal)
Dar, D., Thomashow, L.S., Weller, D.M., Newman, D.K. 2020. Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes. eLife. https://doi.org/10.7554/eLife.59726.

Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system. - (Peer Reviewed Journal)
Schlatter, D.C., Kahl, K., Carlson, B.R., Huggins, D.R., Paulitz, T.C. 2020. Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system.. Soil Biology and Biochemistry. 149. Article 107939. https://doi.org/10.1016/j.soilbio.2020.107939.

Proteomics reveals the changes that contribute to Fusarium head blight resistance in wheat - (Peer Reviewed Journal)
Yang, M., Xianguo, W., Dong, J., Zhao, W., Alam, T., Thomashow, L.S., Weller, D.M., Gao, X., Rustgi, S., Wen, S. 2020. Proteomics reveals the changes that contribute to Fusarium head blight resistance in wheat. Phytopathology. 111(2):386-397. https://doi.org/10.1094/PHYTO-05-20-0171-R.

Genome-wide identification and expression profile analysis of the phospholipase C gene family in wheat (Triticum aestivum L.) - (Peer Reviewed Journal)
Wang, X., Liu, Y., Li, Z., Gao, X., Dong, J., Zhang, J., Zhang, L., Thomashow, L.S., Weller, D.M., Yang, M. 2020. Genome-wide identification and expression profile analysis of the phospholipase C gene family in wheat (Triticum aestivum L.). Plants. 9(7). Article 885. https://doi.org/10.3390/plants9070885.

Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt - (Peer Reviewed Journal)
Yuan, J., Wen, T., Zhang, H., Zhao, M., Penton, R., Thomashow, L.S., Shen, Q. 2020. Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt. ISME Journal. https://doi.org/10.1038/s41396-020-0720-5.

Genetic and pathogenic variation in Heterodera latipons populations from Turkey - (Peer Reviewed Journal)
Dababat, A., Duman, N., Ozer, G., Mokrini, F., Imren, M., Paulitz, T.C. 2020. Genetic and pathogenic variation in Heterodera latipons populations from Turkey. Journal of Nematology. https://doi.org/10.1163/15685411-bja10029.

Determination of Fusarium Crown Rot Resistance to Fusarium culmorum and Fusarium pseudogramineaum Using Real Time PCR - (Peer Reviewed Journal)
Ozdemir, F., Koc, N.K., Paulitz, T.C., Nicol, J.M., Schroeder, K.L., Poole, G. 2020. Determination of Fusarium Crown Rot Resistance to Fusarium culmorum and Fusarium pseudogramineaum Using Real Time PCR. Crop Protection. 135,105204. https://doi.org/10.1016/j.cropro.2020.105204.

Survey of take-all (Gaeumannomyces tritici) on cereals in Tunisia and impact of crop sequences - (Peer Reviewed Journal)
Gargouri, S., Khemir, E., Souissi, A., Murray, T., Fakhfakh, M., Achour, I., Chekali, S., Mliki, M., Paulitz, T.C. 2020. Survey of take-all (Gaeumannomyces tritici) on cereals in Tunisia and impact of crop sequences. Crop Protection. 13. Article 10589. https://doi.org/10.1016/j.cropro.2020.105189.

Population dynamics of root pathogens of wheat under different tillage systems in NE Oregon - (Peer Reviewed Journal)
Yin, C., McLaughlin, K., Paulitz, T.C., Kroese, D.R., Hagerty, C.H. 2020. Population dynamics of root pathogens of wheat under different tillage systems in NE Oregon. Plant Disease. https://doi.org/10.1094/PDIS-03-19-0621-RE.

Identity and pathogenicity of fungi associated with crown and root rot of dryland winter wheat in Azerbaijan - (Peer Reviewed Journal)
Ozer, G., Alkan, M., Imren, M., Muminjanov, H., Paulitz, T.C., Dababat, A.A. 2020. Identity and pathogenicity of fungi associated with crown and root rot of dryland winter wheat in Azerbaijan. Plant Disease. 104(4):2149-2157. https://doi.org/10.1094/PDIS-08-19-1799-RE.

Pseudomonas synxantha 2-79 transformed with pyrrolnitrin biosynthesis genes has improved biocontrol activity against soilborne diseases of wheat and canola - (Peer Reviewed Journal)
Zhang, J., Yang, M., Mavrodi, D.V., Kelton, J., Thomashow, L.S., Weller, D.M. 2020. Pseudomonas synxantha 2-79 transformed with pyrrolnitrin biosynthesis genes has improved biocontrol activity against soilborne diseases of wheat and canola. Phytopathology. 110: 1010-1017. https://doi.org/10.1094/PHYTO-09-19-0367-R.

Chronic sublethal aluminum exposure and wild oat caryopsis decay influence gene expression of Fusarium avenaceum F.a.1 - (Peer Reviewed Journal)
Lewis, R.W., Okubara, P.A., Fuerst, P.E., He, R., Gang, D., Sullivan, T. 2020. Chronic sublethal aluminum exposure and wild oat caryopsis decay influence gene expression of Fusarium avenaceum F.a.1. Frontiers in Microbiology. 11:51. https://doi.org/10.3389/fmicb.2020.00051.

Biological activities of essential oils and lipopeptides applied to control plant pests and diseases: A review - (Peer Reviewed Journal)
Basaid, K., Cheblia, B., Mayad, E., Furze, J.N., Bouharroud, R., Krierd, F., Barakate, M., Paulitz, T.C. 2020. Biological activities of essential oils and lipopeptides applied to control plant pests and diseases: A review. International Journal of Pest Management. https://doi.org/10.1080/09670874.2019.1707327.

Core rhizosphere microbiomes of dryland wheat are influenced by location and land use history - (Peer Reviewed Journal)
Schlatter, D.C., Yin, C., Hulbert, S., Paulitz, T.C. 2020. Core rhizosphere microbiomes of dryland wheat are influenced by location and land use history. Applied and Environmental Microbiology. 86(5):e02135-19. https://doi.org/10.1128/AEM.02135-19.

Real-time PCR assays for the quantification of native yeast DNA in grape berry and fermentation extracts - (Peer Reviewed Journal)
Wang, X., Glawe, D.A., Weller, D.M., Okubara, P.A. 2019. Real-time PCR assays for the quantification of native yeast DNA in grape berry and fermentation extracts. Journal of Microbial Methods. 168:105794. https://doi.org/10.1016/j.mimet.2019.105794.

Impact of phenazine-1-carboxylic acid upon the dynamics and wheat uptake of soil iron and manganese under dryland and irrigated conditions - (Peer Reviewed Journal)
Le Tourneau, M.K., Marshall, M.J., Grant, M.R., Freeze, P., Strawn, D., Lai, B., Dohnalkova, A.C., Weller, D.M., Thomashow, L.S., Harsh, J.B. 2019. Impact of phenazine-1-carboxylic acid upon the dynamics and wheat uptake of soil iron and manganese under dryland and irrigated conditions. Environmental Science and Technology. 2019,53,24,14273-14284. https://doi.org/10.1021/acs.est.9b03962.

First report of Fusarium hostae causing crown rot on wheat in Azerbaijan - (Peer Reviewed Journal)
Ozer, G., Imren, M., Bayraktar, H., Paulitz, T.C., Muminjanov, H., Dababat, A.A. 2019. First report of Fusarium hostae causing crown rot on wheat in Azerbaijan. Plant Disease. 103(12):3278. https://doi.org/10.1094/pdis-05-19-1035-pdn.

Exploring the phytotoxic effect of Pseudomonas brassicacearum Q8r1-96 on tomato - (Peer Reviewed Journal)
Yang, M., Mavrodi, D.V., Mavrodi, O.V., Thomashow, L.S., Weller, D.M. 2019. Exploring the phytotoxic effect of Pseudomonas brassicacearum Q8r1-96 on tomato. Plant Disease. 104(4):1026-1031. https://doi.org/10.1094/PDIS-09-19-1989-RE.

A mutualistic interaction between Streptomyces bacteria, strawberry plants and pollinating bees - (Peer Reviewed Journal)
Kim, D., Cho, G., Jeon, C., Weller, D.M., Thomashow, L.S., Kwak, Y. 2019. A mutualistic interaction between Streptomyces bacteria, strawberry plants and pollinating bees. Nature Communications. 10,4802. https://doi.org/10.1038/s41467-019-12785-3.

Common and unique rhizosphere microbial communities of wheat and canola in a semiarid Mediterranean environment - (Peer Reviewed Journal)
Schlatter, D.C., Hansen, J.C., Schillinger, W.F., Sullivan, T.S., Paulitz, T.C. 2019. Common and unique rhizosphere microbial communities of wheat and canola in a semiarid Mediterranean environment. Soil Biology and Biochemistry. 144:170-181. https://doi.org/10.1016/j.apsoil.2019.07.010.

Mining the drilosphere: bacterial communities and denitrifier abundance in a no-till wheat cropping system - (Peer Reviewed Journal)
Schlatter, D.C., Reardon, C.L., Maynard-Johnson, J.L., Brooks, E., Kahl, K.B., Norby, J., Huggins, D.R., Paulitz, T.C. 2019. Mining the drilosphere: bacterial communities and denitrifier abundance in a no-till wheat cropping system. Frontiers in Microbiology. 10:1339. https://doi.org/10.3389/fmicb.2019.01339.

Cereal root interactions with soilborne pathogens - from trait to gene and back - (Peer Reviewed Journal)
Okubara, P.A., Peetz, A.B., Sharpe, R.M. 2019. Cereal root interactions with soilborne pathogens - from trait to gene and back. Agronomy. 9(4):188. https://doi.org/10.3390/agronomy9040188.

Distribution of Cereal Cyst Nematodes (Heterodera avenae and H. filipjevi) in Eastern Washington State - (Peer Reviewed Journal)
Wen, N., Manning-Thompson, Y., Garland Campbell, K.A., Paulitz, T.C. 2019. Distribution of Cereal Cyst Nematodes (Heterodera avenae and H. filipjevi) in Eastern Washington State. Plant Disease. 103(9):2171-2178. https://doi.org/10.1094/PDIS-10-18-1881-SR.

Biosolids and tillage practices influence soil bacterial communities in dryland wheat - (Peer Reviewed Journal)
Schlatter, D.C., Paul, N.C., Shah, D.H., Schillinger, W.F., Bary, A.L., Sharratt, B.S., Paulitz, T.C. 2019. Biosolids and tillage practices influence soil bacterial communities in dryland wheat. Microbial Ecology. 78(3):737-752. https://doi.org/10.1007/s00248-019-01339-1.

Real-time PCR quantification of Fusarium avenaceum in soil and seeds - (Peer Reviewed Journal)
Pollard, A.T., Okubara, P.A. 2018. Real-time PCR quantification of Fusarium avenaceum in soil and seeds. Journal of Microbial Methods. 157:21-30. https://doi.org/10.1016/j.mimet.2018.12.009.

Diversity of phytobeneficial traits revealed by whole-genome analysis of worldwide-isolated phenazine-producing Pseudomonas spp. - (Peer Reviewed Journal)
Biessy, A., Novinscak, A., Blom, J., Leger, G., Thomashow, L.S., Cazorla, F.M., Josic, D., Filion, M. 2018. Diversity of phytobeneficial traits revealed by whole-genome analysis of worldwide-isolated phenazine-producing Pseudomonas spp. Environmental Microbiology. 21(1):437-455. https://doi.org/10.1111/1462-2920.14476.

Root-associated microbes in sustainable agriculture: models, metabolites and mechanisms - (Peer Reviewed Journal)
Thomashow, L.S., Kwak, Y., Weller, D.M. 2019. Root-associated microbes in sustainable agriculture: models, metabolites and mechanisms. Pest Management Science. 75(9):2360-2367. https://doi.org/10.1002/ps.5406.

Suppression of banana Panama disease induced by soil microbiome reconstruction through an integrated agricultural strategy - (Peer Reviewed Journal)
Shen, Z., Xue, C., Penton, C.R., Thomashow, L.S., Zhang, N., Wang, B., Ruan, Y., Li, R., Shen, Q. 2018. Suppression of banana Panama disease induced by soil microbiome reconstruction through an integrated agricultural strategy. Soil Biology and Biochemistry. 128:164-174. https://doi.org/10.1016/j.soilbio.2018.10.016.

Rapidly mitigating antibiotic resistant risks in chicken manure by Hermetia illucens bioconversion with intestinal microflora - (Peer Reviewed Journal)
Cai, M., Ma, S., Hu, R., Tomberlin, J.K., Thomashow, L.S., Zheng, L., Li, W., Yu, Z., Zhang, J. 2018. Rapidly mitigating antibiotic resistant risks in chicken manure by Hermetia illucens bioconversion with intestinal microflora. Environmental Microbiology. 20(11):4051-4062. https://doi.org/10.1111/1462-2920.14450.

The soil-borne legacy in the age of the holobiont - (Peer Reviewed Journal)
Thomashow, L.S., Letourneau, M., Kwak, Y., Weller, D.M. 2018. The soil-borne legacy in the age of the holobiont. Microbial Biotechnology. 12(1):51-54. https://doi.org/10.1111/1751-7915.13325.

Construction of a proteome reference map and response of the wheat take-all pathogen Gaeumannomyces graminis var. tritici to 2,4-diacetylphloroglucinol - (Peer Reviewed Journal)
Kwon, Y., Jeon, C., Bae, D., Thomashow, L.S., Weller, D.M., Kwak, Y. 2018. Construction of a proteome reference map and response of the wheat take-all pathogen Gaeumannomyces graminis var. tritici to 2,4-diacetylphloroglucinol. Fungal Biology. https://doi.org/10.1016/jfunbio.2018.09.001.

Positive and negative regulation of seed germination by the Arabidopsis GA hormone receptors, GID1a, b, and c - (Peer Reviewed Journal)
Ge, W., Steber, C.M. 2018. Positive and negative regulation of seed germination by the Arabidopsis GA hormone receptors, GID1a, b, and c. Plant Direct. 2(9):e00083. https://doi.org/10.1002/pld3.83.

Arbuscular mycorrhizal fungal communities in organic and conventional onion crops in the Columbia Basin of the Pacific Northwest United States - (Peer Reviewed Journal)
Knerr, A., Wheeler, D., Schlatter, D.C., Sharma-Poudyal, D., Du Toit, L.J., Paulitz, T.C. 2019. Arbuscular mycorrhizal fungal communities in organic and conventional onion crops in the Columbia Basin of the Pacific Northwest United States. Phytobiomes Journal. 2(4):194-207. https://doi.org/10.1094/PBIOMES-05-18-0022-R.

Resource announcement: Genome sequences for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei) - (Peer Reviewed Journal)
Xia, C., Wang, M., Yin, C., Cornejo, O.E., Hulbert, S., Chen, X. 2018. Resource announcement: Genome sequences for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei). Molecular Plant-Microbe Interactions. https://doi.org/10.1094/MPMI-04-18-0107-A.

Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest - (Peer Reviewed Journal)
Schroeder, K.L., Schlatter, D.C., Paulitz, T.C. 2018. Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest. Applied Soil Ecology. 130:59-68. https://doi.org/10.1016/j.apsoil.2018.05.019.

Biocontrol of soilborne diseases of wheat: A tale of two antibiotics - (Abstract Only)

Dust-associated microbiomes from dryland wheat fields differ with tillage practice and biosolids application - (Peer Reviewed Journal)
Schlatter, D.C., Schillinger, W.F., Bary, A.I., Sharratt, B.S., Paulitz, T.C. 2018. Dust-associated microbiomes from dryland wheat fields differ with tillage practice and biosolids application. Atmospheric Environment. 185:29-40.

Fungal community composition and diversity vary with soil depths and landscape position in a no-till wheat cropping system - (Peer Reviewed Journal)
Schlatter, D.C., Kahl, K., Carlson, B.R., Huggins, D.R., Paulitz, T.C. 2018. Fungal community composition and diversity vary with soil depths and landscape position in a no-till wheat cropping system. FEMS Microbiology Ecology. 94:1-15. https://doi.org/10.1093/femsec/fiy098.

Canola versus wheat rotation effects on subsequent wheat yield - (Peer Reviewed Journal)
Schillinger, W., Paulitz, T.C. 2018. Canola versus wheat rotation effects on subsequent wheat yield. Field Crops Research. 223:26-32.

An integrated workflow for phenazine biosynthetic gene cluster discovery and characterization - (Peer Reviewed Journal)
Coates, R., Bowen, B.P., Oberortner, E., Thomashow, L.S., Hadjithomas, M., Zhao, Z., Ke, J., Silva, L., Louie, K., Wang, G., Robinson, D., Tarver, A., Hamilton, M., Lubbe, A., Feltcher, M., Dangl, J., Pati, A., Weller, D.M., Northen, T.R., Cheng, J., Mouncey, N.J., Deutsch, S., Yoshikuni, Y. 2018. An integrated workflow for phenazine biosynthetic gene cluster discovery and characterization. Journal of Industrial Microbiology and Biotechnology. 45(7):567-577. https://doi.org/10.1007/s10295-018-2025-5.

Function and distribution of a lantipeptide in strawberry Fusarium wilt disease suppressive soils - (Peer Reviewed Journal)
Kim, D., Jeon, C., Shin, J., Weller, D.M., Thomashow, L.S., Kwak, Y. 2019. Function and distribution of a lantipeptide in strawberry Fusarium wilt disease suppressive soils. Molecular Plant-Microbe Interactions. 32(3):306-312. https://doi.org/10.1094/MPMI-05-18-0129-R.

Long-term irrigation affects the dynamics and activity of the wheat rhizosphere microbiome - (Peer Reviewed Journal)
Mavrodi, D., Mavrodi, O., Elbourne, L., Tetu, S., Bonsall, R., Parejko, J., Yang, M., Paulsen, I., Weller, D.M., Thomashow, L.S. 2018. Long-term irrigation affects the dynamics and activity of the wheat rhizosphere microbiome. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2018.00345.

Multiple modes of nematode control by volatiles of Pseudomonas putida 1A00316 from Antarctic soil against Meloidogyne incognita - (Peer Reviewed Journal)
Zhai, Y., Shao, Z., Cai, M., Zheng, L., Li, G., Huang, D., Cheng, W., Thomashow, L.S., Weller, D.M., Yu, Z., Zhang, J. 2018. Multiple modes of nematode control by volatiles of Pseudomonas putida 1A00316 from Antarctic soil against Meloidogyne incognita. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2018.00253.

Botrytis and native grape yeasts – not all interactions are created equal - (Abstract Only)
Okubara, P.A., Wang, X., Weller, D.M., Glawe, D. 2018. Botrytis and native grape yeasts – not all interactions are created equal. Plant and Animal Genome Conference. W775.

Biological control of Botrytis cinerea: interactions with native vineyard yeasts from Washington State - (Peer Reviewed Journal)
Wang, X., Glawe, D.A., Kramer, E., Weller, D.M., Okubara, P.A. 2018. Biological control of Botrytis cinerea: interactions with native vineyard yeasts from Washington State. Phytopathology. https://apsjournals-apsnet-org.nal.idm.oclc.org/doi/pdf/10.1094/PHYTO-09-17-0306-R.

Defense enzyme responses in dormant wild oat and wheat caryopses challenged with a seed decay pathogen - (Peer Reviewed Journal)
James, M.S., Pollard, A.T., Okubara, P.A., Fuerst, E.P. 2018. Defense enzyme responses in dormant wild oat and wheat caryopses challenged with a seed decay pathogen. Frontiers in Plant Science. 8:2259.

Location, root proximity, and glyphosate-use history modulate the effects of glyphosate on fungal community networks of wheat - (Peer Reviewed Journal)
Schlatter, D.C., Yin, C., Hulbert, S., Burke, I., Paulitz, T.C. 2017. Location, root proximity, and glyphosate-use history modulate the effects of glyphosate on fungal community networks of wheat. Microbial Ecology. https://doi.org/10.1007/s00248-017-1113-9.

Suppressive Soils: New Paradigms for an Old Story? - (Abstract Only)

Caryolan-1-ol, an antifungal volatile produced by Streptomyces spp., inhibits the endomembrane system of fungi - (Peer Reviewed Journal)
Cho, G., Kim, J., Park, C., Nislow, C., Kwak, Y., Weller, D.M. 2018. Caryolan-1-ol, an antifungal volatile produced by Streptomyces spp., inhibits the endomembrane system of fungi. The Open Biology Journal. 7:170075.

Inhibition of plant-interacting microbes by Vegelys®, an allium-based antimicrobial formulation - (Peer Reviewed Journal)
Okubara, P.A., Kumar, N., Hohenarter, L., Graham, D., Kandel, S., Doty, S.L., Micknass, U., Kogel, K.H., Imani, J. 2017. Inhibition of plant-interacting microbes by Vegelys®, an allium-based antimicrobial formulation. Journal of Biology and Nature. 8:40-51.

Biosolids and conservation tillage: Impacts on soil fungal communities in dryland wheat-fallow cropping systems - (Peer Reviewed Journal)
Schlatter, D.C., Schillinger, W.F., Bary, A.I., Sharratt, B.S., Paulitz, T.C. 2017. Biosolids and conservation tillage: Impacts on soil fungal communities in dryland wheat-fallow cropping systems. Soil Biology and Biochemistry. 115:556-567.

Molecular and microscopic insights into the formation of soil organic matter in a red pine rhizosphere - (Peer Reviewed Journal)
Dohnalkova, A.C., Tfaily, M.M., Smith, A.P., Chu, R.K., Crump, A.R., Brislawn, C.J., Varga, T., Shi, Z., Thomashow, L.S., Harsh, J.B., Keller, C.K. 2017. Molecular and microscopic insights into the formation of soil organic matter in a red pine rhizosphere. Soil Processes. 1(1):4. https://doi.org/10.3390/soils1010004.