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ARS Home » Northeast Area » Wyndmoor, Pennsylvania » Eastern Regional Research Center » Molecular Characterization of Foodborne Pathogens Research » Research » Research Project #431165

Research Project: Development of Portable Detection and Quantification Technologies for Foodborne Pathogens

Location: Molecular Characterization of Foodborne Pathogens Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Detection of pathogenic bacteria in large volume food samples using an enzyme-linked immunoelectrochemical biosensor Reprint Icon - (Peer Reviewed Journal)
Capobianco Jr, J.A., Armstrong, C.M., Lee, J., Gehring, A.G. 2020. Detection of pathogenic bacteria in large volume food samples using an enzyme-linked immunoelectrochemical biosensor. Food Control. https://doi.org/10.1016/j.foodcont.2020.107456.

Comparative analysis of genomic and functional characteristics of a multidrug resistant Campylobacter jejuni strain YH002 isolated from retail beef liver Reprint Icon - (Peer Reviewed Journal)
Ghatak, S., He, Y., Reed, S.A., Irwin, P.L. 2020. Comparative analysis of genomic and functional characteristics of a multidrug resistant Campylobacter jejuni strain YH002 isolated from retail beef liver. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2019.2770.

Complete genome sequence and annotation of Campylobacter jejuni YH003 isolated from retail chicken Reprint Icon - (Peer Reviewed Journal)
He, Y., Reed, S.A., Strobaugh Jr, T.P. 2020. Complete genome sequence and annotation of Campylobacter jejuni YH003 isolated from retail chicken. Microbiology Resource Announcements. https://doi.org/10.1128/MRA.01307-19.

Detection of Shiga toxin producing Escherichia coli (STEC) in beef products using droplet digital PCR Reprint Icon - (Peer Reviewed Journal)
Capobianco Jr, J.A., Armstrong, C.M., Clark, M., Cariou, A., Leveau, A., Pierre, S., Fratamico, P., Strobaugh Jr, T.P. 2019. Detection of Shiga toxin producing Escherichia coli (STEC) in beef products using droplet digital PCR. International Journal of Food Microbiology. 319(2020):108499.

PRAP: Pan Resistome Analysis Pipeline Reprint Icon - (Peer Reviewed Journal)
He, Y., Zhou, X., Chen, Z., Gehring, A.G., Shi, X. 2020. PRAP: Pan Resistome Analysis Pipeline. BMC Bioinformatics. (2020) 21:20. https://doi.org/10.1186/s12859-019-3335-y.

Impacts of clarification techniques on sample constituents and pathogen retention Reprint Icon - (Peer Reviewed Journal)
Armstrong, C.M., Gehring, A.G., Paoli, G., Chen, C., He, Y., Capobianco Jr, J.A. 2019. Impacts of clarification techniques on sample constituents and pathogen retention. Foods. https://doi.org/10.3390/foods8120636.

Pulsed-field gel electrophoresis typing of Staphylococcus aureus strains Reprint Icon - (Book / Chapter)
He, Y., Reed, S.A. 2019. Pulsed-field gel electrophoresis typing of Staphylococcus aureus strains. Methods in Molecular Biology. New York, New York: Springer. 2069:78-88. https://doi.org/10.1007/978-1-4939-9849-4_5.

A comprehensive multilocus sequence typing scheme for identification and genotyping of Staphylococcus strains Reprint Icon - (Peer Reviewed Journal)
Song, M., Li, Q., He, Y., Feng, Z., Lan, L., Fan, Y., Liu, H., Chen, D., Yang, M. 2019. A comprehensive multilocus sequence typing scheme for identification and genotyping of Staphylococcus strains. Foodborne Pathogens and Disease. 16(5):331-338. https://doi.org/10.1089/fpd.2018.2565.

Detection of shiga toxin 2 produced by Escherichia coli in foods using AlphaLISA Reprint Icon - (Peer Reviewed Journal)
Armstrong, C.M., Ruth, L., Capobianco Jr, J.A., Strobaugh Jr, T.P., Fernando, R., Gehring, A.G. 2018. Detection of shiga toxin 2 produced by Escherichia coli in foods using AlphaLISA. Toxins. 10(11):422. https://doi.org/10.3390/toxins10110422.

Whole genome sequencing and annotation of Staphylococcus aureus strain SJTUF_J27 isolated from seaweed Reprint Icon - (Peer Reviewed Journal)
Xie, Y., He, Y., Ghatak, S., Irwin, P.L., Yan, X., Strobaugh Jr, T.P., Gehring, A.G. 2018. Whole genome sequencing and annotation of Staphylococcus aureus strain SJTUF_J27 isolated from seaweed. Data in Brief. 20:894-898. https://doi.org/10.1016/j.dib.2018.08.084.

Serogroup-level resolution of the “Super-7” Shiga toxin-producing Escherichia coli using nanopore single-molecule DNA sequencing - (Peer Reviewed Journal)
Peritz, A., Chen, C., Paoli, G., Gehring, A.G. 2018. Serogroup-level resolution of the “Super-7” Shiga toxin-producing Escherichia coli using nanopore single-molecule DNA sequencing. Analytical and Bioanalytical Chemistry. https://doi.org/10.1007/s00216-018-0877-1.

Rapid and potentially portable detection and quantification technologies for foodborne pathogens - (Proceedings)
Gehring, A.G., Armstrong, C.M., Capobianco Jr, J.A., He, Y., Paoli, G., Fratamico, P.M. 2017. Rapid and potentially portable detection and quantification technologies for foodborne pathogens . United States-Japan Cooperative Program in Natural Resources (UJNR). p.12.

Whole genome sequencing and analysis of Campylobacter coli YH502 from retail chicken reveals a plasmid-borne type VI secretion system Reprint Icon - (Peer Reviewed Journal)
Ghatak, S., He, Y., Reed, S.A., Strobaugh Jr, T.P., Irwin, P.L. 2017. Whole genome sequencing and analysis of Campylobacter coli YH502 from retail chicken reveals a plasmid-borne type VI secretion system. Genomics Data. 11:128-131.

Evaluation of ELISA tests specific for Shiga toxin 1 and 2 in food and water samples Reprint Icon - (Peer Reviewed Journal)
Gehring, A.G., Fratamico, P.M., Lee, J., Ruth, L., He, X., He, Y., Paoli, G., Stanker, L.H., Rubio, F.M. 2017. Evaluation of ELISA tests specific for Shiga toxin 1 and 2 in food and water samples. Food Control. 77:145-149.