Research Project: Antimicrobial Resistance and Ecology of Zoonotic Foodborne Pathogens in Dairy Cattle

Location: Environmental Microbial & Food Safety Laboratory

Publications (Clicking on the reprint icon will take you to the publication reprint.)

RNA-Seq reveals differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells - (Abstract Only)

The resistome of the bovine gastrointestinal tract - (Literature Review)
Haley, B.J., Van Kessel, J.S. 2021. The resistome of the bovine gastrointestinal tract. Current Opinion in Biotechnology. 73:213-219. https://doi.org/10.1016/j.copbio.2021.07.025.

Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland - (Peer Reviewed Journal)
Slowey, R., Kim, S., Prendergast, D., Madigan, G., Van Kessel, J.S., Haley, B.J. 2021. Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland. Zoonoses and Public Health. (10):1011. https://doi.org/10.1111/zph.12884.

Genome sequences of antibiotic-resistant Escherichia coli isolated from veal valves in the United States - (Peer Reviewed Journal)
Kim, S., Van Kessel, J.S., Haley, B.J. 2021. Genome sequences of antibiotic-resistant Escherichia coli isolated from veal valves in the United States. Journal of Global Antimicrobial Resistance. https://doi.org/10.1016/j.jgar.2021.04.024.

Microbial communities and resistomes of young calf feces - (Abstract Only)

Large scale genome-wide analysis identifies characteristics of multidrug-resistant Escherichia coli potentially associated with persistence in the dairy calf gut - (Abstract Only)

Genomic analysis of antibiotic-resistant and susceptible Escherichia coli isolated from bovine sources in Maputo, Mozambique - (Peer Reviewed Journal)
Taviani, E., Muchongo, A., Kim, S., Van Kessel, J.S., Haley, B.J. 2021. Genomic analysis of antibiotic-resistant and susceptible Escherichia coli isolated from bovine sources in Maputo, Mozambique. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2020.2901.

One health enteric package v1.0: Expanded and standardized metadata package for the US’s genomic epidemiology network for enteric surveillance - (Abstract Only)

Metagenomic analysis of the microbial communities and resistomes of feces from veal calves - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2020. Metagenomic analysis of the microbial communities and resistomes of feces from veal calves. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2020.609950.

Interaction of Salmonella enterica with bovine epithelial cells demonstrates serovar-specific attachment and invasion patterns - (Peer Reviewed Journal)
Salaheen, S., Sonnier, J.L., Kim, S., Haley, B.J., Van Kessel, J.S. 2020. Interaction of Salmonella enterica with bovine epithelial cells demonstrates serovar-specific attachment and invasion patterns. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2019.2765.

Longitudinal analysis of Salmonella Kentucky genomes from a long-term dairy herd epidemic reveals potential mechanisms of strain succession - (Abstract Only)
Seon Woo, K., Salaheen, S., Van Kessel, J.S., Haley, B.J. 2019. Longitudinal analysis of Salmonella Kentucky genomes from a long-term dairy herd epidemic reveals potential mechanisms of strain succession. American Society for Microbiology. p. 1.

Metagenomic analysis of fecal microbiome in Escherichia coli O157:H7-shedding and non-shedding animals from a single dairy farm - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Karns, J.S., Hovingh, E., Haley, B.J., Van Kessel, J.S. 2019. Metagenomic analysis of fecal microbiome in Escherichia coli O157:H7-shedding and non-shedding animals from a single dairy farm. Food Control. 102:76-80. https://doi.org/10.1016/j.foodcont.2019.03.022.

Complete genome sequence of a Salmonella enterica subsp. enterica serovar Fresno isolate recovered from beef cattle lymph nodes - (Peer Reviewed Journal)
Haley, B.J., Smith, T.P., Harhay, G.P., Loneragan, G.H., Webb, H.E., Bugarel, M., Kim, S., Van Kessel, J.S., Harhay, D.M. 2019. Complete genome sequence of a Salmonella enterica subsp. enterica serovar Fresno isolate recovered from beef cattle lymph nodes. Microbiology Resource Announcements. 8(2):e01338-18. https://doi.org/10.1128/MRA.01338-18.

Diversity of extended-spectrum cephalosporin-resistant Escherichia coli in feces from calves and cows on Pennsylvania dairy farms - (Peer Reviewed Journal)
Salaheen, S., Cao, H., Sonnier, J.L., Kim, S., Del Collo, L.P., Hovingh, E., Karns, J.S., Haley, B.J., Van Kessel, J.S. 2019. Diversity of extended-spectrum cephalosporin-resistant Escherichia coli in feces from calves and cows on Pennsylvania dairy farms. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2018.2579.

Microbial communities, resistomes, and virulomes of veal calves and dairy animals with a side-note on Salmonella Kentucky - (Abstract Only)
Haley, B.J., Salaheen, S., Kim, S., Van Kessel, J.S. 2018. Microbial communities, resistomes, and virulomes of veal calves and dairy animals with a side-note on Salmonella Kentucky. Microbiology. p. 1.

Fecal metagenome sequences from lactating dairy cows shedding Escherichia coli O157:H7 - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Karn, J.S., Haley, B.J., Van Kessel, J.S. 2018. Fecal metagenome sequences from lactating dairy cows shedding Escherichia coli O157:H7. Microbiology Resource Announcements. 7:e01279-18. https://doi.org/10.1128/MRA.01279-18.

Antimicrobial resistance in fecal Escherichia coli and Salmonella enterica in dairy calves: a systematic review - (Peer Reviewed Journal)
Springer, H., Denagamage, T., Fenton, G., Haley, B.J., Van Kessel, J.S., Hovingh, E. 2019. Antimicrobial resistance in fecal Escherichia coli and Salmonella enterica in dairy calves: a systematic review. Foodborne Pathogens and Disease. 16:23-24. https://doi.org/10.1089/fpd.2018.2529.

Antimicrobial resistance among Escherichia coli isolated from veal calf operations in Pennsylvania - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Cao, H., Wolfgang, D., Karns, J., Haley, B.J., Hovingh, E., Van Kessel, J.S. 2019. Antimicrobial resistance among Escherichia coli isolated from veal calf operations in Pennsylvania. Foodborne Pathogens and Disease. 16:74-80. https://doi.org/10.1089/fpd.2018.2530.

Salmonella enterica recovery from river waters of the Maryland Eastern Shore reveals high serotype diversity and some multidrug resistance - (Peer Reviewed Journal)
Callahan, M., Van Kessel, J.S., Micallef, S.A. 2018. Salmonella enterica recovery from river waters of the Maryland Eastern Shore reveals high serotype diversity and some multidrug resistance. Environmental Research. 168:7-13. https://doi.org/10.1016/j.envres.2018.09.012.

Whole genome sequencing and comparative genome analysis of human and bovine Salmonella Dublin isolates - (Abstract Only)
Kim, S., Harhay, D.M., Salaheen, S., Van Kessel, J.S., Haley, B.J. 2018. Whole genome sequencing and comparative genome analysis of human and bovine Salmonella Dublin isolates. American Society for Microbiology.

Age-dependent differences in gut microbial communities and resistomes of veal calves - (Abstract Only)
Salaheen, S., Seon-Woo, K., Hovingh, E., Haley, B.J., Van Kessel, J.S. 2018. Age-dependent differences in gut microbial communities and resistomes of veal calves. American Society for Microbiology. p. 1.

Genetic diversity of dairy farm – associated Listeria monocytogenes - (Peer Reviewed Journal)
Kim, S., Haendiges, J., Keller, E.N., Myers, R., Kim, A., Lombard, J.E., Karns, J.S., Van Kessel, J.S., Haley, B.J. 2018. Genetic diversity of dairy farm – associated Listeria monocytogenes. PLoS One. 13(5):e0197053. https://doi.org/10.1371/journal.pone.0197053.

Age-dependent differences in gut microbial communities and resistomes of veal calves - (Abstract Only)
Salaheen, S., Kim, S., Hovingh, E., Haley, B.J., Van Kessel, J.S. 2018. Age-dependent differences in gut microbial communities and resistomes of veal calves. BARC Poster Day. p. 1.

Age-dependent differences in gut microbial communities and resistomes of veal calves - (Abstract Only)
Salaheen, S., Kim, S., Horvingh, E., Haley, B.J., Van Kessel, J.S. 2018. Age-dependent differences in gut microbial communities and resistomes of veal calves. American Society for Microbiology. p. 1.

Genetic diversity of multi-drug resistant and antibiotic susceptible Escherichia coli from dairy cows and calves - (Abstract Only)
Haley, B.J., Kim, S., Salaheen, S., Van Kessel, J.S. 2018. Genetic diversity of multi-drug resistant and antibiotic susceptible Escherichia coli from dairy cows and calves. American Society for Microbiology Annual Meeting. p. 1.

Rivers on the Maryland Eastern Shore are a reservoir for antibiotic-resistant Salmonella enterica - (Abstract Only)
Callahan, M., Shepard, S., Van Kessel, J.S., Micallef, S.A. 2018. Rivers on the Maryland Eastern Shore are a reservoir for antibiotic-resistant Salmonella enterica. International Association for Food Protection. p. 1.

Prevalence of Salmonella enterica, Listeria monocytogenes, and pathogenic E. coli in bulk tank milk and milk filters from U.S. dairy operations in 2014 - (Peer Reviewed Journal)
Sonnier, J.L., Karns, J.S., Lombard, J.E., Kopral, C.A., Haley, B.J., Kim, S., Van Kessel, J.S. 2018. Prevalence of Salmonella enterica, Listeria monocytogenes, and pathogenic Escherichia coli in bulk tank milk and milk and milk filters from U.S. dairy operations in the National Animal Health Monitoring System Dairy 2014 study. Journal of Dairy Science. 101:1943-1956. https://doi.org/10.3168/jds.2017-13546.

Genome sequences of thirty Escherichia coli O157:H7 isolates recovered from a single dairy farm and its associated off-site heifer raising facility - (Peer Reviewed Journal)
Kim, S., Karns, J.S., Van Kessel, J.S., Haley, B.J. 2017. Genome sequences of thirty Escherichia coli O157:H7 isolates recovered from a single dairy farm and its associated off-site heifer raising facility. Genome Announcements. https://doi.org/10.1128/genomeA.00814-17.

Genome sequences of five multidrug resistant Escherichia coli ST117 isolates recovered from dairy calves - (Peer Reviewed Journal)
Kim, S., Karns, J.S., Van Kessel, J.S., Haley, B.J. 2017. Genome sequences of five multidrug resistant Escherichia coli ST117 isolates recovered from dairy calves. Genome Announcements. https://doi.org/10.1128/genomeA.00732-17.

Alternative growth promoters alter broiler gut microbiome and enhance body weight gain - (Abstract Only)
Salaheen, S., Kim, S., Haley, B.J., Van Kessel, J.S., Biswas, D. 2017. Alternative growth promoters alter broiler gut microbiome and enhance body weight gain. American Society for Microbiology Branch Meeting. May 30, 2017.

Epidemiology of 3rd generation cephalosporin-resistant Escherichia coli on dairy farms - (Abstract Only)
Cao, H., Seon-Woo, K., Hovingh, E., Van Kessel, J.S. 2017. Epidemiology of 3rd generation cephalosporin-resistant Escherichia coli on dairy farms. American Society for Microbiology Branch Meeting. Baltimore, MD on Mary 30, 2017.