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United States Department of Agriculture

Agricultural Research Service

Research Project: Genetic Improvement of Sugarcane for Temperate Climates

Location: Sugarcane Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Natural allelic variations in highly polyploidy Saccharum complex Reprint Icon - (Peer Reviewed Journal)
Song, J., Yang, X., Resende, M., Neves, L.G., Todd, J.R., Zhang, J., Comstock, J.C., Wang, J. 2016. Natural allelic variations in highly polyploidy Saccharum complex. Frontiers in Plant Science. 7:804. DOI: 10.3389/fpls.2016.00804.

Development and integration of an SSR-based molecular identity database into sugarcane breeding program - (Other)
Pan, Y.-B. 2016. Development and integration of an SSR-based molecular identity database into sugarcane breeding program [Editorial]. Agronomy. 6(2):28. DOI:10.3390/agronomy6020028.

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.) Reprint Icon - (Peer Reviewed Journal)
Arro, J., Park, J., Man Wai, C., Van Buren, R., Pan, Y-B., Nagai, C., Da Silva, J., Ming, R. 2016. Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.). Euphytica. 209:477-493. DOI: 10.1007/s10681-016-1672-8

Estimating broad sense heritability and investigating the mechanism of genetic transmission of cold tolerance using mannitol as a measure of post-freeze juice degradation in sugarcane and energycane (Saccharum spp.) - (Peer Reviewed Journal)
Hale, A.L., Viator, R.P., Eggleston, G., Hodnett, G., Stelly, D., Boykin, D.L., Miller, D. 2016. Estimating broad sense heritability and investigating the mechanism of genetic transmission of cold tolerance using mannitol as a measure of post-freeze juice degradation in sugarcane and energycane (Saccharum spp.). Journal of Agricultural and Food Chemistry. DOI: 10.1021/acs.jafc.5b03803.

Rational regional distribution of sugarcane cultivars in China Reprint Icon - (Peer Reviewed Journal)
Luo, J., Pan, Y.-B., Xu, L., Grisham, M.P., Zhang, H., Que, Y. 2015. Rational regional distribution of sugarcane cultivars in China. Scientific Reports. 5:15701. DOI: 10.1038/srep15721.

Identification of quantitative trait loci controlling sucrose content based on an enriched genetic linkage map of sugarcane (saccharum spp. hybrids) cultivar ‘LCP 85-384’ - (Abstract Only)
Pan, Y-B., Liu, P., Chandra, A., Que, Y., Chen, P., Grisham, M.P. 2016. Identification of quantitative trait loci controlling sucrose content based on an enriched genetic linkage map of sugarcane (saccharum spp. hybrids) cultivar ‘LCP 85-384’ [abstract]. International Plant and Animal Genome Conference, January 9-13, 2016, San Diego, CA.

Biplot evaluation of test environments and identification of mega-environments for sugarcane cultivars in China Reprint Icon - (Peer Reviewed Journal)
Luo, J., Pan, Y.-B., Youxiong, Q., Zhang, H., Grisham, M.P., Liping, X. 2015. Biplot evaluation of test environments and identification of mega-environments for sugarcane cultivars in China. Scientific Reports. 5:15505. DOI: 10.1038/srep15505.

Impact of biotechnology on sugarcane agriculture and industry - (Proceedings)
Pan, Y.-B. 2015. Impact of biotechnology on sugarcane agriculture and industry. Proceedings for International Conference on: World economics for sugar industry towards food and energy in a changed economic environment. November 7-10, 2015, Aswan, Egypt.

The effects of low-dose electron-beam irradiation and storage time and temperature on xanthophyllis, antioxidant capacity, and phenolics in the potato cultivar Atlantic - (Peer Reviewed Journal)

Identification of quantitative trait loci controlling sugar content based on an enriched genetic linkage map of sugarcane (Saccharum spp. hybrids) cultivar ‘LCP 85-384’ Reprint Icon - (Peer Reviewed Journal)
Liu, P., Chandra, A., Que, Y., Chen, P., Grisham, M.P., White, W.H., Dalley, C.D., Tew, T.L., Pan, Y.-B. 2016. Identification of quantitative trait loci controlling sugar content based on an enriched genetic linkage map of sugarcane (Saccharum spp. hybrids) cultivar ‘LCP 85-384’. Euphytica. 207:527-549. DOI: 10.1007/s10681-015-1538-5.

Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids Reprint Icon - (Peer Reviewed Journal)
Lu, X., Zhou, H., Pan, Y.-B., Chen, C.Y., Zhu, J., Chen, P., Cai, Q., Chen, R. 2015. Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids. Genetics and Molecular Research. 14(4):18384-18395. DOI: 10.4238/2015.December.23.26.

Biomass yield comparisons of giant miscanthus, giant reed, and miscane grown under irrigated and rainfed conditions - (Peer Reviewed Journal)

Genetic diversity analysis of sugarcane germplasm based on fluorescence-labeled simple sequence repeat markers and a capillary electrophoresis-based genotyping platform Reprint Icon - (Peer Reviewed Journal)
You, Q., Pan, Y.-B., Xu, L.-P., Gao, S.-W., Wang, Q.-N., Su, Y.-C., Yang, Y.-Q., Wu, Q.-B., Zhou, D.-G., Que, Y.-X. 2016. Genetic diversity analysis of sugarcane germplasm based on fluorescence-labeled simple sequence repeat markers and a capillary electrophoresis-based genotyping platform. Sugar Tech. 18:380-390. DOI: 10.1007/s12355-015-0395-9.

A report on the 2014 outfield variety tests - (Trade Journal)

Quantification of red stripe variability in Louisiana sugarcane using precision agriculture methods - (Abstract Only)
Johnson, R.M., Grisham, M.P. 2015. Quantification of red stripe variability in Louisiana sugarcane using precision agriculture methods. Journal of the American Society of Sugar Cane Technologists. 35:45.

Fluorescence- and capillary electrophoresis (CE)-based SSR DNA fingerprinting and a molecular identity database for the Louisiana sugarcane industry - (Abstract Only)
Pan, Y., Scheffler, B.E., Dufrene Jr, E.O., Waguespack, H., Grisham, M.P. 2015. Fluorescence- and capillary electrophoresis (CE)-based SSR DNA fingerprinting and a molecular identity database for the Louisiana sugarcane industry. Journal of the American Society of Sugar Cane Technologists. 35:51.

2014 Louisiana "Ho" nursery and infield variety trials - (Experiment Station)

Integrating Near Infrared Spectroscopy (NIR) into the USDA-ARS sugarcane breeding program in Houma, LA - (Abstract Only)

Yield stability in genotypes derived through basic breeding - (Abstract Only)

Historical use of cultivars as parents in Florida and Louisiana sugarcane breeding program - (Peer Reviewed Journal)
Todd, J.R., Glaz, B.S., Burner, D.M., Kimbeng, C. 2015. Historical use of cultivars as parents in Florida and Louisiana sugarcane breeding program. International Scholarly Research Notices. 2015:1-9. DOI:10.1155/2015/257417.

The latest progress in sugarcane molecular genetics research at the USDA-ARS, Sugarcane Research Laboratory - (Abstract Only)

Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids - (Abstract Only)
Pan, Y.-B., Lu, X., Zhou, H., Chen, C.Y., Zhu, J., Chen, P., Cai, Q., Chen, R. 2015. Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids [abstract]. Plant and Animal Genome XXIII Conference. Paper No. 13970. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper13970.html

Allelic divergence and cultivar-specific SSR alleles revealed by capillary electrophoresis using fluorescence-labeled SSR markers in sugarcane Reprint Icon - (Peer Reviewed Journal)
Chandra, A., Grisham, M.P., Pan, Y.-B. 2014. Allelic divergence and cultivar-specific SSR alleles revealed by capillary electrophoresis using fluorescence-labeled SSR markers in sugarcane. Genome. 57:363–372. DOI: 10.1139/gen-2014-0072.

Independently segregating simple sequence repeats (SSR) alleles in polyploid sugarcane Reprint Icon - (Peer Reviewed Journal)
Pan, Y.-B., Liu, P., Que, Y. 2014. Independently segregating simple sequence repeats (SSR) alleles in polyploid sugarcane. Sugar Tech. 17(3):235-242. DOI: 10.1007/s12355-014-0330-5.

Photosynthetic and canopy characteristics of different varieties at the early elongation stage and their relationships with the cane yield in sugarcane Reprint Icon - (Peer Reviewed Journal)
Luo, J., Pan, Y.-B., Xu, L., Zhang, Y., Zhang, H., Chen, R., Que, Y. 2014. Photosynthetic and canopy characteristics of different varieties at the early elongation stage and their relationships with the cane yield in sugarcane. The Scientific World Journal. 2014:1-9. Article ID 707095. DOI: 10.1155/2014/707095.

Cultivar evaluation and essential test locations identification for sugarcane breeding in China Reprint Icon - (Peer Reviewed Journal)
Luo, J., Pan, Y.-B., Xu, L., Zhang, H., Yuan, Z., Deng, Z., Chen, R., Que, Y. 2014. Cultivar evaluation and essential test locations identification for sugarcane breeding in China. The Scientific World Journal. 2014:1-10. Article ID 302753. DOI: 10.1155/2014/302753.

Impacts of the basic breeding program - (Abstract Only)

Ho 07-613 – A potential new sugarcane variety for Louisiana - (Abstract Only)
White, W.H., Dufrene Jr, E.O., Verdun, D.L., Duet Jr, M.J., Hale, A.L., Landry, C.J., Grisham, M.P., Warnke, K.Z., Pan, Y.-B. 2014. Ho 07-613 – A potential new sugarcane variety for Louisiana [abstract]. Journal of the American Society of Sugar Cane Technologists. 34:61.

Managing damaging freeze events in Louisiana sugarcane - (Abstract Only)

"Ho" varieties for the Texas sugarcane industry - (Abstract Only)

Impacts of the basic breeding program - (Abstract Only)

Frequency and distribution of the brown rust resistance gene Bru1 and implications for the Louisiana sugarcane breeding programme Reprint Icon - (Peer Reviewed Journal)
Parco, A.A., Mavir, A.C., Hale, A.L., Hoy, J.W., Kimbeng, C.A., Pontif, M.J., Gravois, K.A., Baisakh, N. 2014. Frequency and distribution of the brown rust resistance gene Bru1 and implications for the Louisiana sugarcane breeding programme. Plant Breeding. DOI: 10.1111/pbr.12186.

Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids - (Abstract Only)
Pan, Y.-B., Zhou, H., Chen, C.Y., Lu, X., Cai, Q., Zhu, J., Chen, P.H., Chen, R.K. 2014. Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids. Journal of the American Society of Sugar Cane Technologists. 34:64-65.

Impacts of the USDA basic breeding program - (Trade Journal)
Hale, A.L. 2014. Impacts of the USDA basic breeding program. Sugar Bulletin. 92(6):13-16.

Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism Reprint Icon - (Peer Reviewed Journal)
Que, Y., Pan, Y.-B., Lu, Y., Yang, C., Yang, Y., Huang, N., Xu, L. 2014. Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism. BioMed Research International. 2014:1-10. Article ID 468375. DOI: 10.1155/2014/468375.

Allelic divergence in sugarcane cultivars revealed through capillary electrophoregrams of fluorescence-labeled microsatellite markers - (Abstract Only)
Chandra, A., Grisham, M.P., Pan, Y-B. 2014. Allelic divergence in sugarcane cultivars revealed through capillary electrophoregrams of fluorescence-labeled microsatellite markers [abstract]. Plant and Animal Genome XXII Program. Available online: https://pag.confex.com/pag/xxii/webprogram/Paper11195.html.

Last Modified: 2/23/2016
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