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ARS Home » Southeast Area » Stuttgart, Arkansas » Dale Bumpers National Rice Research Center » Research » Research Project #425079

Research Project: Genomic Approaches and Genetic Resources for Improving Rice Yield and Grain Quality

Location: Dale Bumpers National Rice Research Center

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Natural variation in a molybdate transporter controls grain molybdenum concentration in rice Reprint Icon - (Peer Reviewed Journal)
Huang, X., Liu, H., Pinson, S.R., Lin, H., Guerinot, M., Zhao, F., Salt, D.E. 2019. Natural variation in a molybdate transporter controls grain molybdenum concentration in rice. New Phytologist. https://doi.org/10.1111/nph.15546.

Comparative rice bran metabolomics across diverse cultivars and functional rice gene-bran metabolite relationships Reprint Icon - (Peer Reviewed Journal)
Zarei, I., Luna, E., Leach, J.E., McClung, A.M., Vilchez, S., Ousmane, K., Ryan, E.P. 2018. Comparative rice bran metabolomics across diverse cultivars and functional rice gene-bran metabolite relationships. Metabolites. https://doi.org/10.3390/metabo8040063.

Validation of yield component traits identified by GWA mapping in a tropical japonica x tropical japonica rice mapping population Reprint Icon - (Peer Reviewed Journal)
Eizenga, G.C., Jia, M.H., Jackson, A.K., Boykin, D.L., Liakat, A.M., Shakiba, E., Tran, N.T., McCouch, S.R., Edwards, J. 2018. Validation of yield component traits identified by GWA mapping in a tropical japonica x tropical japonica rice mapping population. The Plant Genome. https://doi.org/10.3835/plantgenome2018.04.0021.

Methylated arsenic cycling in rice paddies under varied irrigation methods - (Abstract Only)
Maguffin, S.C., Reid, M.C., Mcclung, A.M., Rohila, J.S. 2018. Methylated arsenic cycling in rice paddies under varied irrigation methods. Meeting Abstract. July 1-6, 2018.

Understanding the physiological and molecular mechanisms of rice-microbial interactions that produce methane - (Abstract Only)
Woojae, K., Liem, B., Chun, J., McClung, A.M., Adviento-Borbe, A.A., Rivers, A.R., Pinson, S.R., Maul, J.E., Reddy, V., Barnaby, J.Y. 2018. Understanding the physiological and molecular mechanisms of rice-microbial interactions that produce methane. 29th Annual Beltsville Poster Day Book, pg 33.

Association analysis of three diverse rice (Oryza sativa L.) germplasm collections for loci regulating grain quality traits Reprint Icon - (Peer Reviewed Journal)
Huggins, T.D., Chen, M., Fjellstrom, R.G., Jackson, A.K., McClung, A.M., Edwards, J. 2018. Association analysis of three diverse rice (Oryza sativa L.) germplasm collections for loci regulating grain quality traits. The Plant Genome. https://doi:10.3835/plantgenome2017.09.0085.

Novel QTLs affecting rice kernel fissure resistance discovered in the cultivar ‘Saber’ augment those from ‘Cybonnet’ Reprint Icon - (Peer Reviewed Journal)
Pinson, S.R., Jia, Y., Jia, M.H., Gibbons, J.W. 2018. Novel QTLs affecting rice kernel fissure resistance discovered in the cultivar ‘Saber’ augment those from ‘Cybonnet’. Crop Science. https://doi.org:10.2135/cropsci2017.10.0593.

Genetic and physiological relationships between grain arsenic and resistance to straighthead - (Proceedings)
Pinson, S.R., Edwards, J., Hueschele, D.J., Tarpley, L., Isbell, C., Green, C.E., Smith, A.P. 2018. Genetic and physiological relationships between grain arsenic and resistance to straighthead. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.

Effects of growing environment and cooking methods on resistant starch content of high amylose rice varieties - (Proceedings)
Chen, M., McClung, A.M., Tabien, R.E. 2018. Effects of growing environment and cooking methods on resistant starch content of high amylose rice varieties. 37th Rice Technical Working Group Meeting Proceedings, February 19-22, 2018,Long Beach, California. p 160-161. Electronic Publication.

Developing molecular markers for use in marker-assisted selection from rice genome-wide association studies - (Proceedings)
Eizenga, G.C., Edwards, J., Jackson, A.K., Jia, M.H., Boykin, D.L. 2018. Developing molecular markers for use in marker-assisted selection from rice genome-wide association studies. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. p. 71-72.

Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection - (Proceedings)
McClung, A.M., Bockelman, H.E., Jia, M.H., Edwards, J. 2018. Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection. Proceedings of 37th Rice Technical Working Group Meeting, February 19-22, 2018, Long Beach, California. p 79. Electronic Publication.

Association analysis and marker development for grain quality traits using USDA diverse rice germplasm collections - (Proceedings)
Edwards, J., Huggins, T.D., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis and marker development for grain quality traits using USDA diverse rice germplasm collections. Rice Technical Working Group Meeting Proceedings, February 19-22, 2018, San Diego, California. Electronic Publication

Dissection of genetic architecture of grain chalk using NIR spectroscopy - (Proceedings)
Barnaby, J.Y., Huggins, T.D., Lee, H., Oh, M., McClung, A.M., Pinson, S.R., Tarpley, L., Kim, M.S., Edwards, J. 2018. Dissection of genetic architecture of grain chalk using NIR spectroscopy. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.

Rice diversity panels available through the genetic stocks oryza collection - (Proceedings)
McClung, A.M., Bernhardt, L., Edwards, J., Eizenga, G.C. 2018. Rice diversity panels available through the genetic stocks oryza collection. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. p. 80.

Root biomass as a major means of affecting methane emissions - (Proceedings)
Kim, W., Barnaby, J.Y., Liem, B., Chun, J., McClung, A.M., Adviento-Borbe, A.A., Pinson, S.R. 2018. Root biomass as a major means of affecting methane emissions. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.

Association analysis for loci regulating grain quality traits and marker development in the USDA rice collection - (Abstract Only)
Huggins, T.D., Edwards, J., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis for loci regulating grain quality traits and marker development in the USDA rice collection. Meeting Abstract. Phenome 2018 Conference, Tucson Arizona. Poster Number 46.

Evolutionary trajectory of Pack-MULEs is determined by their epigenetic status Reprint Icon - (Peer Reviewed Journal)
Zhao, D., Hamilton, J.P., Vailancourt, B., Zhang, W., Eizenga, G.C., Cui, Y., Jiang, J., Buell, C., Jiang, N. 2018. Evolutionary trajectory of Pack-MULEs is determined by their epigenetic status. Nucleic Acids Research. https://doi.org:10.1093/nar/gky025.

Microbial-driven arsenic cycling in rice paddies amended with monosodium methanearsonate - (Abstract Only)
Maguffin, S.C., McClung, A.M., Rohila, J.S., Derry, L., Huang, R., Reid, M.C. 2017. Microbial-driven arsenic cycling in rice paddies amended with monosodium methanearsonate. American Geophysical Union. Hydrology and Biogeochemical Cycling at American Geophysical Union (AGU) 2017 Fall Meeting, December 11-15, 2017, New Orleans, Louisiana.

In vitro fermentation patterns of rice bran components by human gut microbiota Reprint Icon - (Peer Reviewed Journal)
Pham, T., Savary, B., Chen, M., Lee, S., Mcclung, A.M. 2017. In vitro fermentation patterns of rice bran components by human gut microbiota. Nutrients. 9(11):1237. https://doi.org:10.3390/nu9111237.

Variation in levels of the flavone tricin in bran from rice genotypes varying in pericarp color - (Peer Reviewed Journal)
Poulev, A., Chen, M., Cherravuru, S., Raskin, I., Belanger, F.C. 2017. Variation in levels of the flavone tricin in bran from rice genotypes varying in pericarp color. Journal of Cereal Science. 79:226-232.

Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits - (Abstract Only)
Edwards, J., Huggins, T.D., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits. Plant and Animal Genome Conference XXVI Proceedings. P0913.

Genetic variation for domestication related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population Reprint Icon - (Peer Reviewed Journal)
Eizenga, G.C., Sanchez, P., Jackson, A.K., Edwards, J., Hurwitz, B.L., Wing, R.A., Kudrna, D. 2017. Genetic variation for domestication related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population. Molecular Breeding. https://doi.org:10.1007/s11032-017-0734-5.

GENOME WIDE ASSOCIATION STUDY DISSECTING GENETIC ARCHITECTURE OF GRAIN PHYSICOCHEMICAL TRAITS IN RICE - (Abstract Only)
Barnaby, J.Y., Huggins, T.D., McClung, A.M., Pinson, S.R., Edwards, J., Tarpley, L., Kim, M.S., Lee, H., Oh, M. 2017. Genome wide association study dissecting genetic architecture of grain physicochemical traits in rice. 34th Annual Mid Atlantic Plant Molecular Biology Society Conference . p.15. Program Booklet. http://wp.towson.edu/mapmbs/files/2017/08/34th-MAPMBS-program-2017-26ysoam.pdf

Validation of yield component traits identified by GWA mapping in a rice tropical japonica x tropical japonica RIL mapping population - (Abstract Only)
Eizenga, G.C., Jia, M.H., Jackson, A.K., Boykin, D.L., Ali, L.M., Shakiba, E., McCouch, S.R., Edwards, J.D. 2017. Validation of yield component traits identified by GWA mapping in a rice tropical japonica x tropical japonica RIL mapping population. Crop Science Society of America. https://scisoc.confex.com/scisoc/2017am/webprogram/Paper106518.html.

Genetic, chemical, and field management strategies for reducing accumulation of arsenic in rice grains - (Abstract Only)
Pinson, S.R., Heuschele, D.J., Isbell, C., Smith, A.P. 2017. Genetic, chemical, and field management strategies for reducing accumulation of arsenic in rice grains. ASA-CSSA-SSSA Annual Meeting Abstracts.

Phenolic content, anthocyanins and antiradical capacity of diverse purple bran rice genotypes as compared to other bran colors - (Peer Reviewed Journal)
Chen, M., Mcclung, A.M., Bergman, C.J. 2017. Phenolic content, anthocyanins and antiradical capacity of diverse purple bran rice genotypes as compared to other bran colors. Journal of Cereal Science. 77:110-119.

Research perspectives overview at DBNRRC to maintain sustainable food security - (Abstract Only)
Barnaby, J.Y., Mcclung, A.M. 2017. Research perspectives overview at DBNRRC to maintain sustainable food security. Meeting Abstract. 6th RAVL Partnership Workshop and 1st Meeting for Korea-American ARS Scientists. Beltsville, MD, June19-22, 2017. Page 15.

Metabolic responses to arsenic in rice seedlings that differed in grain arsenite concentration Reprint Icon - (Peer Reviewed Journal)
Heuschele, D.J., Pinson, S.R., Smith, A.P. 2017. Metabolic responses to arsenic in rice seedlings that differed in grain arsenite concentration. Crop Science. https://doi.org:10.2135/cropsci2016.06.0493.

Resistant Starch: Variation among High Amylose Rice Varieties and Its Relationship with Apparent Amylose Content, Pasting Properties and Cooking Methods - (Peer Reviewed Journal)
Chen, M., Bergman, C.J., McClung, A.M., Everette, J.D., Tabien, R. 2017. Resistant starch: variation among high amylose rice varieties and its relationship with apparent amylose content, pasting properties and cooking methods. Food Chemistry. doi:10.1016/j.foodchem.2017.04.170.

Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.) - (Peer Reviewed Journal)
Sater, H.M., Pinson, S.R.M., Moldenhauer, K., Siebenmorgen, T.J., Mason, R.E., Boyett, V.A., Edwards, J. 2017. Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.). Crop Science. doi:10.2135/cropsci2016.09.08213.

Genetic Architecture of Grain Chalk in Rice and Interactions with a Low Phytic Acid Locus - (Peer Reviewed Journal)
Edwards, J., Jackson, A.K., Bryant, R.J., McClung, A.M. 2017. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Field Crops Research. doi:10.1016/jc.fcr.2017.01.015.

Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population - (Abstract Only)
Eizenga, G.C., Sanchez, P.L., Jackson, A.K., Edwards, J., Hurwitz, B.L., Wing, R.A., Kudrna, D. 2017. Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population. Meeting Abstract. https://pag.confex.com/pag/xxv/meetingapp.cgi/Paper/24453.

Ricebase - a resource for rice breeding - (Abstract Only)
Edwards, J. 2017. Ricebase - a resource for rice breeding. Plant and Animal Genome. doi:10.106/j.fcr.2017.01.015.

Rice bran extracts inhibit invasion and intracellular replication of Salmonella typhimurium in mouse and porcine intestinal epithelial cells - (Peer Reviewed Journal)
Ghazi, I.A., Zarei, I., Mapesa, J.O., Wilburn, J.R., Leach, J.E., Rao, S., Broeckling, C., McClung, A.M., Ryan, E.P. 2016. Rice bran extracts inhibit invasion and intracellular replication of Salmonella typhimurium in mouse and porcine intestinal epithelial cells. Journal of Applied Research on Medicinal and Aromatic Plants. doi:10.4172/2167-0412.1000271.

Exploring the power of rice (O. sativa x O. rufipogon) chromosome segment substitution line libraries - (Abstract Only)
Eizenga, G.C., Singh, N., Shakiba, E., Ali, L., Kim, H., Declerck, G.A., Wright, M.H., Ahn, S., Mccouch, S.R. 2016. Exploring the power of rice (O. sativa x O. rufipogon) chromosome segment substitution line libraries. Crop Science Society of America. https://scisoc.confex.com/scisoc/2016am/webprogram/Paper100932.html.

Metabolic Differences Found In Seedlings of Rice Varieties That Produce Grains Low Versus High in Arsenic Concentration - (Abstract Only)
Pinson, S.R., Heuschele, D.J., Smith, A.P. 2016. Metabolic Differences Found In Seedlings of Rice Varieties That Produce Grains Low Versus High in Arsenic Concentration. ASA-CSSA-SSSA Annual Meeting Abstracts. Abstracts, paper number 100843.

Enhancing the health-beneficial qualities of whole grain rice - (Abstract Only)
Chen, M., Min, B., Bergman, C.J., Mcclung, A.M., Pinson, S.R., Boue, S.M. 2016. Enhancing the health-beneficial qualities of whole grain rice. AACC International. http://www.aaccnet.org/meetings/mtgpresentations/Pages/2016Abstracts.aspx?LID=282.

Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees, and whole-genome-based data - (Peer Reviewed Journal)
Edwards, J., Baldo, A.M., Mueller, L.A. 2016. Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees, and whole-genome-based data. Database: The Journal of Biological Databases and Curation. 2016:baw107.

A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain - (Peer Reviewed Journal)
Huang, X., Deng, F., Pinson, S.R., Guerinot, M., Salt, D.E., Ma, J. 2016. A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain. Nature Communications. 7:121138. doi10.138/ncomms12138.

Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines - (Peer Reviewed Journal)
Eizenga, G.C., Edwards, J., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines. Crop Science 56:1-12. DOI: 10.2135/cropsci2015.10.0603.

Bran data of total flavonoid and total phenolic contents, oxygen radical absorbance capacity, and profiles of proanthocyanidins and whole grain physical traits of 32 red and purple rice varieties - (Peer Reviewed Journal)
Chen, M., McClung, A.M., Bergman, C.J. 2016. Bran data of total flavonoid and total phenolic contents, oxygen radical absorbance capacity, and profiles of proanthocyanidins and whole grain physical traits of 32 red and purple rice varieties. Data in Brief 8:6-13.

Concentrations of oligomers and polymers of proanthocyanidins in red and purple rice bran and their relationships to total phenolics, flavonoids, antioxidant capacity and whole grain color - (Peer Reviewed Journal)
Chen, M., McClung, A.M., Bergman, C.J. 2016. Concentrations of oligomers and polymers of proanthocyanidins in red and purple rice bran and their relationships to total phenolics, flavonoids, antioxidant capacity and whole grain color. Food Chemistry 208:279-287.

Small Differences in Water Level Impacted Straighthead Ratings - (Proceedings)
Heuschele, D.J., Pinson, S.R. 2017. Small Differences in Water Level Impacted Straighthead Ratings. Rice Technical Working Group Meeting Proceedings. p. 97. March 1-4, 2016. CDROM.

Fine Mapping and Introgressing a Fissure Resistance Locus - (Proceedings)
Sater, H.M., Moldenhauer, K.K., Mason, R.E., Pinson, S.R., Siebenmorgen, T., Boyett, V.A. 2017. Fine Mapping and Introgressing a Fissure Resistance Locus. Rice Technical Working Group Meeting Proceedings. p. 170-171. March 2-4, 2016. CDROM.

Differences in how rice plants processes arsenic in their cells - (Proceedings)
Heuschele, D.J., Pinson, S.R.M., Smith, A. 2017. Differences in how rice plants processes arsenic in their cells. Rice Technical Working Group Meeting Proceedings. p. 173. March 1-4, 2016. CDROM.

Identification of genes and physiological factors that reduce accumulation of arsenic in rice grain - (Proceedings)
Pinson, S.R.M., Heuschele, D.J., Salt, D.E., Smith, A., Tarpley, L. 2017. Identification of genes and physiological factors that reduce accumulation of arsenic in rice grain. Rice Technical Working Group Meeting Proceedings. p. 172. March 1-4, 2016. CDROM.

Rice fissure resistance QTLs from ‘Saber’ complement those from ‘Cypress’ - (Proceedings)
Pinson, S.R.M., Jia, Y., Gibbons, J. 2017. Rice fissure resistance QTLs from ‘Saber’ complement those from ‘Cypress’. Rice Technical Working Group Meeting Proceedings. , p. 171-172. March 1-4, 2016. CDROM.

Genetic analysis of genetic basis of a physiological disorder "straighthead’’ in rice (Oryza sativa L.) - (Peer Reviewed Journal)
Li, X., Yan, W., Agrama, H., Jackson, A.K., Jia, M.H., Jia, L., Moldenhauer, K., Correa, F., Wu, D. 2016. Genetic analysis of genetic basis of a physiological disorder "straighthead’’ in rice (Oryza sativa L.). Genes and Genomics. doi: 10.1007/s13258-016-0394-6.

Is there variation in resistant starch among high amylose rice varieties? - (Proceedings)
Chen, M., McClung, A.M. 2017. Is there variation in resistant starch among high amylose rice varieties?. Proc. 36th Rice Technical Working Group, Galveston, TX. p. 169-170. March 1-4,2016. CDROM

Why develop O. sativa x O. rufipogon chromosome segment substitution line libraries? - (Proceedings)
Eizenga, G.C., Singh, N., Shakiba, E., Ali, M., Kim, H., Declerck, G.A., Wright, M.H., Ahn, S., Mccouch, S.R. 2017. Why develop O. sativa x O. rufipogon chromosome segment substitution line libraries?. Proc. 36th Rice Technical Working Group Meeting Proceedings. p. 66. 1-4 March 2016. CDROM.

Progress in the paddy field - (Popular Publication)
McClung, A.M. 2016. Progress in the paddy field. International Innovation. Pg. 1-4.

Response Variability across Diverse Rice Accessions under Rising Temperature and Increasing Atmospheric Carbon Dioxide - (Proceedings)
Wang, D.R., Bunce, J.A., Tomecek, M.B., Gealy, D.R., McClung, A.M., Mccouch, S.R., Ziska, L.H. 2017. Response Variability across Diverse Rice Accessions under Rising Temperature and Increasing Atmospheric Carbon Dioxide. Proc. 36th Rice Technical Working Group Meeting, Galveston, TX, p. 84. March 1-4, 2016. CDROM.

Open Access Resources for Genome Wide Association Studies (GWAS) in rice (Oryza sativa) illustrate the power of population-specific mapping - (Peer Reviewed Journal)
McCouch, S.R., Wright, M.H., Tung, C., Maron, L.G., McNally, K., Fitzgerald, M., Singh, N., DeClerck, G.A., Agosoto Perez, F., Korniliev, P., Greenberg, A., Naredo, M.B., Mercado, S.M., Harrington, S.E., Shi, Y., Branchini, D.A., Kuser-Falcao, P.R., Leung, H., Ebana, K., Yano, M., Eizenga, G.C., McClung, A.M., Mezey, J. 2016. Open access resources for genome wide association studies (GWAS) in rice (Oryza sativa) illustrate the power of population-specific mapping. Nature Communications 7:10532. doi: 10.1038/ncomms10532.

Evaluation of a M-202x Oryza nivara advanced backcross population for seedling vigor, agronomic traits, yield components, yield and grain quality - (Peer Reviewed Journal)
Eizenga, G.C., Neves, P.C., Bryant, R.J., Agrama, H.A., Mackill, D.J. 2015. Evaluation of a M-202x Oryza nivara advanced backcross population for seedling vigor, agronomic traits, yield components, yield and grain quality. Euphytica. 208:157–171. doi: 10.1007/s10681-015-1613-y.

Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines - (Abstract Only)
Edwards, J., Eizenga, G.C., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines. Plant and Animal Genome Conference Proceedings. W012.

Vitamin E homologs and ¿-oryzanol levels in rice (Oryza sativa L.) during seed development - (Peer Reviewed Journal)
Chen, M., Bergman, C.J. 2016. Vitamin E homologs and y-oryzanol levels in rice (Oryza sativa L.) during seed development. Cereal Chemistry. 93:182-188.

Unlocking the variation hidden in rice germplasm collections with genomics - (Abstract Only)
Eizenga, G.C., Shakiba, E., Edwards, J., Baldo, A.M., Korniliev, P., Mccouch, S.R. 2015. Unlocking the variation hidden in rice germplasm collections with genomics. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. . In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Minneapolis, MN 15-18 November 2015. Available at: https://scisoc.confex.com/scisoc/2015am/webprogram/Paper92079.html Paper 92079.

Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus - (Abstract Only)
Mcclung, A.M., Jackson, A.K., Bryant, R.J., Edwards, J. 2015. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Agronomy Abstracts, paper number 94185, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94185.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1035.

Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar - (Abstract Only)
Mcclung, A.M., Eizenga, G.C., Mccouch, S.M., Edwards, J. 2015. Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar. Agronomy Abstracts, paper number 94223, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94223.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1037.

Rice breeding trends over 30 years for predicting response to climate change - (Abstract Only)
Mcclung, A.M., Wang, D.R., Woodard, J.D., Mccouch, S.M., Edwards, J. 2015. Rice breeding trends over 30 years for predicting response to climate change. Agronomy Abstracts, paper number 95665, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper95665.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 601.

Rice varietal differences in arsenite metabolism - (Abstract Only)
Heuschele, D.J., Pinson, S.R., Smith, A.P. 2015. Rice varietal differences in arsenite metabolism. ASA-CSSA-SSSA Annual Meeting Abstracts. Minneapolis, MN, Nov. 15-18, 2015. Poster number: 1108. Paper number: 93248. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper93248.html.

Accumulation of arsenic in leaves and grain are affected by variety and soil arsenic - (Abstract Only)
Pinson, S.R., Heuschele, D.J., Smith, A.P. 2015. Accumulation of arsenic in leaves and grain are affected by variety and soil arsenic. ASA-CSSA-SSSA Annual Meeting Abstracts. Minneapolis, MN, Nov. 15-18, 2015. Paper number 937367.

Preserving rice quality: fine mapping and introgressing a fissure resistance locus - (Abstract Only)
Sater, H.M., Moldenhauer, K.K., Mason, R.E., Pinson, S.R., Siebenmorgen, T., Boyett, V.A. 2015. Preserving rice quality: fine mapping and introgressing a fissure resistance locus. ASA-CSSA-SSSA Annual Meeting Abstracts. Minneapolis, MN, Nov. 15-18, 2015. Paper number 94498.

Effect of nitrogen rate and the environment on physicochemical properties of selected high amylose rice cultivars - (Peer Reviewed Journal)
Bryant, R.J., Yeater, K.M., Mcclung, A.M. 2015. Effect of nitrogen rate and the environment on physicochemical properties of selected high amylose rice cultivars. Cereal Chemistry. 92(6):604-610. doi.org/10.1094/CCHEM-02-15-0035-R.

In vitro fermentation patterns of rice bran components by human gut microbiota - (Abstract Only)

Rice tissue accumulation of particular elements is dependent on the plant’s physiology - (Experiment Station)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E. 2015. Rice tissue accumulation of particular elements is dependent on the plant’s physiology. Texas Rice, Highlights in Research Special Edition 2015 [Meeting Abstract]. p. 8-9. Availiable: http://beaumont.tamu.edu/eLibrary/Newsletter/2015_Highlights_in_Research.pdf

Reducing arsenic accumulation in rice grain through iron oxide amendment - (Peer Reviewed Journal)
Farrow, E.M., Wang, J., Burken, J.G., Shi, H., Yan, W., Yang, J., Hua, B., Deng, B. 2015. Reducing arsenic accumulation in rice grain through iron oxide amendment. Ecotoxicology and Environmental Safety. 118:55-61. doi: 10.1016/j.ecoenv.2015.04.014.

Effects of cultivars, organic cropping management and environment on antioxidants in whole grain rice Reprint Icon - (Peer Reviewed Journal)
Chen, M., Mcclung, A.M. 2015. Effects of cultivars, organic cropping management and environment on antioxidants in whole grain rice. Cereal Chemistry. 92(4):364-369. DOI.org/10.1094/CCHEM-11-14-0240-R.

New market opportunities for rice grains - (Abstract Only)

Registration of 24 ‘IR36’ rice trisomic lines - (Peer Reviewed Journal)
Eizenga, G.C., Khush, G.S. 2015. Registration of 24 ‘IR36’ rice trisomic lines. Journal of Plant Registrations. 9:398–402. doi:10.3198/jpr2014.11.0079crgs.

Construction of six Oryza sativa x O. rufipogon Chromosome Segment Substitution Line (CSSL) Libraries - (Abstract Only)
Shakiba E., Eizenga G.C., Singh N., Ali M.L., Kim H.J., Wright M., Ahn S.N., McCouch S. 2014. Construction of six Oryza sativa x O. rufipogon chromosome segment substitution line (CSSL) libraries. International Plant & Animal Genome XXIII. San Diego, CA. 10-14 Jan. 2015. Available at: https://pag.confex.com/pag/xxiii/webprogram/Paper15195.html.

Rice Genotype Variation in Leaf-Grain Element Concentration Associations Reprint Icon - (Abstract Only)
Tarpley L., R. Chittoori, S.R.M. Pinson, M.L. Guerinot, and D.E. Salt. 2014. Rice genotype variation in leaf-grain element concentration associations. Agronomy Abstracts, paper number 88078, Long Beach, CA, Nov. 2-6, 2014. https://scisoc.confex.com/scisoc/2014am/webprogram/Paper88078.html. (oral presentation)

Identification of major genes affecting nutritional element concentrations in rice grains Reprint Icon - (Abstract Only)
Pinson, S.R.M., L. Tarpley, D.J. Heuschele, M.L. Guerinot, and D.E Salt. 2014. Identification of major genes affecting nutritional element concentrations in rice grains. Agronomy Abstracts, paper number 87946, Long Beach, CA, Nov. 2-6, 2014. https://scisoc.confex.com/scisoc/2014am/webprogram/Paper87946.html (oral presentation)

Health-promoting phytochemicals in rice: genotype screening for biofortification breeding - (Abstract Only)
Chen, M., Bergman, C.J., Fjellstrom, R.G., Pinson, S.R., Mcclung, A.M. 2014. Health-promoting phytochemicals in rice: genotype screening for biofortification breeding. Proc. ASA-CSSA-SSSA Annual Meeting Abstracts, San Diego, CA, Nov 2-5, 2104. p. x.

Developing and delivering biofortified Rice to the consumer - (Abstract Only)
Mcclung, A.M., Chen, M. 2014. Developing and delivering biofortified rice to the consumer. ASA-CSSA-SSSA Annual Meeting Abstracts, November 2-5, 2014, Long Beach, CA.

Six rice chromosome segment substitution lines libraries with O. rufipogon introgressions - (Abstract Only)
Eizenga G.C., Singh N., Shakiba E., Ali M.L., Kim H.J., Wright M.H., Ahn S.N. McCouch S.R. 2014. Six rice chromosome segment substitution line libraries with O. rufipogon introgressions. In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Long Beach, CA 2–5 Nov. 2014. Available at: https://scisoc.confex.com/scisoc/2014am/webprogram/Paper86425.html. [CDROM].

Rice lines with high leaf mineral nutrient levels - (Experiment Station)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E. 2014. Rice lines with high leaf mineral nutrient levels. Texas Experiment Station Field Day Handout. Texas Rice, Highlights in Research Special Edition:pg.9-10. http://beaumont.tamu.edu/eLibrary/Newsletter/2014_Highlights_in_Research.pdf

Rice lines with high leaf mineral nutrient levels - (Experiment Station)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E. 2014. Rice lines with high leaf mineral nutrient levels. Texas Experiment Station Field Day Handout. Texas Rice, Highlights in Research Special Edition:pg.9-10. http://beaumont.tamu.edu/eLibrary/Newsletter/2014_Highlights_in_Research.pdf

Isolation of functional components from red rice bran for evaluating their colon-specific health benefits - (Abstract Only)

Unraveling the secrets of rice wild species - (Book / Chapter)
Shakiba, E., Eizenga, G.C. 2014. Unraveling the secrets of rice wild species. In: Yan, W., Bao, J., editors. Rice - Germplasm, Genetics and Improvement. InTech. DOI. 10.5772/58393.

Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.) - (Peer Reviewed Journal)
Min, B., McClung, A.M., Chen, M. 2014. Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.). Food Chemistry. 159:106-115.

Identification of genetic loci underlying the kernel fissure-resistance exhibited by 'cypress' and 'saber' - (Proceedings)
1. Pinson, S.R.M., J. Gibbons, and Y. Jia. 2014. Identification of genetic loci underlying the kernel fissure-resistance exhibited by 'Cypress' and 'Saber'. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 58-59. Feb. 18-21, 2014. CDROM.

Identification of QTLs that enhance the nutritional value of rice grain and limit accumulation of undesirable elements such as arsenic - (Proceedings)
2. Pinson, S.R.M., L.Tarpley, W. Yan, G. Norton, M. Zhang, M.L. Guerinot, and D.E. Salt. 2014. Identification of QTLs that enhance the nutritional value of rice grain and limit accumulation of undesirable elements such as arsenic. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 57-58. Feb. 18-21, 2014. CDROM.

Rice grain element concentration predictions based on leaf concentrations: accelerating improvement of nutritional quality - (Proceedings)
3. Tarpley, L., R. Chittoori, S.R.M. Pinson, D.E. Salt, M.L. Guerinot, B. Lahner, M. Zhang, and J.T. Cothren. 2014. Rice grain element concentration predictions based on leaf concentrations: accelerating improvement of nutritional quality. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 51. Feb. 18-21, 2014. CDROM.

Early screening of recombinant inbred lines for fissure resistance in non-semidwarf rice - (Proceedings)
4. Sater, H.M., Moldenhauer, K.A., Pinson, S.R.M., and Boyett, V.A. 2014. Early Screening of Recombinant Inbred Lines for Fissure Resistance in Non-Semidwarf Rice. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 61. Feb. 18-21, 2014. CDROM.

Characterization of an RNase Z nonsense mutation identified exclusively in environment-conditioned genic male sterile rice - (Peer Reviewed Journal)
Zhang, H.L., Huang, J.Z., Liu, Q.L., Nawaz, Z., Lu, H.P., Gong, J.Y., Zhu, Y.J., Yan, W., Shu, Q.Y. 2014. Characterization of an RNase Z nonsense mutation identified exclusively in environment-conditioned genic male sterile rice. Molecular Breeding. 34:481-489. doi: 10.1007/s11032-014-0051-1.

Effects of high night temperature and abscisic acid (ABA) on rice (Oryza sativa L.) physiology - (Proceedings)
Mohammed, A.R., Chen, M.-H., Tarpley, L. 2014. Effects of high night temperature and abscisic acid (ABA) on rice (Oryza sativa L.) physiology. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 113. Feb. 18-21, 2014. CDROM.

Development of Japonica mapping populations to validate GWAS in the rice diversity panel 1 - (Proceedings)
Hancock T.A., Ali M.L., McCouch, S.R., Eizenga, G.C. 2014. Development of Japonica mapping populations to validate GWAS in the rice diversity panel 1. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 64-65. Feb. 18-21, 2014. CDROM.

Use of the Rice Diversity Panel 1 to map traits important for rice improvement - (Proceedings)
Eizenga, G.C., McClung, A.M., Wright, M.H., Greenberg, A.J., Singh, N., Agosto-Perez, F.J., DeClerck, G.A., Mezey, J.G., and McCouch, S.R. 2014. Use of the Rice Diversity Panel 1 to map traits important for rice improvement. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 56-57. Feb. 18-21, 2014. CDROM.

Effect of enzyme activity on the starch structure and processing quality of selected rice varieties - (Abstract Only)
Bryant, R., Yeater, K., Wang, Y.-J., Counce, P., and McClung, A. 2014. Effect of Enzyme Activity on the Starch Structure and Processing Quality of Selected Rice Varieties. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 162. Feb. 18-21, 2014. CDROM.

US cultivar grain quality as assessed using objective and subjective methods - (Proceedings)
McClung, A.M., Yeater, K., Jodari, F, Linscombe, S., Walker, T., Ottis, B., Wilson, L.T., and Moldenhauer, K. 2014. U.S. Cultivar Grain Quality as Assessed Using Objective and Subjective Methods. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 165. Feb. 18-21, 2014. CDROM.

Generalizations on the use of leaf element concentrations to accelerate improvement of rice grain nutritional quality - (Abstract Only)
Tarpley, L., Chittoori, R., Pinson, S.R., Salt, D.E., Guerinot, M.L., Cothren, T. 2013. Generalizations on the use of leaf element concentrations to accelerate improvement of rice grain nutritional quality. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper number 78835, Tampa, FL, Nov. 2-6, 2013.

Genetic and field management strategies to enhance the nutritional value of rice grains and limit accumulation of undesirable elements such as arsenic - (Abstract Only)
Pinson, S.R., Tarpley, L., Chittoori, R., Yan, W., Guerinot, M.L., Salt, D.E. 2013. Genetic and field management strategies to enhance the nutritional value of rice grains and limit accumulation of undesirable elements such as arsenic. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper number 78886, Tampa FL, Nov. 2-6, 2013.

Optimal fertilizer N rates and yield-scaled global warming potential in drill seeded rice - (Peer Reviewed Journal)
Adviento-Borbe, M.A., Pittelkow, C.M., Anders, M., Van Kessel, C., Hill, J.E., McClung, A.M., Six, J., Linquist, B.A. 2013. Optimal fertilizer N rates and yield-scaled global warming potential in drill seeded rice. Journal of Environmental Quality. 42(6):1623-1634.

Starch physicochemical properties of rice accessions and their association with molecular markers Reprint Icon - (Peer Reviewed Journal)
Asante, M.D., Offei, S.K., Gracen, V., Adu-Dapaah, H., Danquah, E.Y., McClung, A.M., Bryant, R.J. 2013. Starch physicochemical properties of rice accessions and their association with molecular markers. Starch/Starke. 65:1-7.

Genetic and field management strategies to for limiting accumulation of arsenic in rice grains - (Abstract Only)
Pinson, S.R., Tarpley, L., Yan, W., Salt, D.E. 2013. Genetic and field management strategies to for limiting accumulation of arsenic in rice grains [abstract]. American Chemical Society Abstracts, April 7-11, 2013, New Orleans, Louisiana. p.324.

Found: genes controlling the nutrient content of the rice grain Reprint Icon - (Abstract Only)
Pinson, S.R., Tarpley, L., Yeater, K.M., Yan, W., Guerinot, M., Salt, D.E. 2012. Found: genes controlling the nutrient content of the rice grain. ASA-CSSA-SSSA Annual Meeting Abstracts. Agronomy Abstracts Oct. 21-24, 2012 Cincinnati, OH. Paper number: 376-2.

Rice root physiological and morphological traits of diverse genotypes grown in different media Reprint Icon - (Abstract Only)
Chittoori, R., Pinson, S.R., Tarpley, L. 2012. Rice root physiological and morphological traits of diverse genotypes grown in different media. ASA-CSSA-SSSA Annual Meeting Abstracts. Agronomy Abstracts. Cincinatti, OH. Oct. 21-24, 2012 Paper number: 97-8.

Root physiological and morphological characteristics of 24 rice varieties selected for diverse grain mineral Reprint Icon - (Abstract Only)
Chittoori, R., Pinson, S.R., Tarpley, L. 2012. Root physiological and morphological characteristics of 24 rice varieties selected for diverse grain mineral. ASA-CSSA-SSSA Annual Meeting Abstracts. Agronomy Abstracts. Cincinnati, OH. Oct. 21 – 24, 2012 Poster number: 808.

Rice bran phytochemicals and dietary colon chemoprevention teamwork - (Proceedings)
Borreson, E., Forster, G., Kumar, A., Keller, A., Chen, M., Mcclung, A.M., Weir, T.L., Wdowik, M., Ryan, E. 2012. Rice bran phytochemicals and dietary colon chemoprevention teamwork. Rice Technical Working Group Meeting Proceedings. Hot Springs, AR Feb. 27 - Mar. 1, 2012. pg. 160-161.

Genotype and environment effects on Tocopherol, Tocotrienol, and y-Oryzanol contents of southern US rice - (Peer Reviewed Journal)
Bergman, C.J., Xu, Z. 2003. Genotype and environment effects on Tocopherol, Tocotrienol,andy-Oryzanol contents of southern US rice. Cereal Chemistry. 80(4):446-449.