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ARS Home » Pacific West Area » Albany, California » Plant Gene Expression Center » Research » Research Project #425045

Research Project: Characterizing Circadian Regulatory Networks in Grain Crops to Establish their Role in Development and Abiotic Responses

Location: Plant Gene Expression Center

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

SPF45-related SPLICING FACTOR FOR PHYTOCHROME SIGNALING promotes photomorphogensis by regulating pre-mRNA splicing in arabidopsis - (Peer Reviewed Journal)

Functional characterization of a putative glycine max ELF4 transgenic aradopsis and its role during flowering control - (Peer Reviewed Journal)
Gomes, J.M., Henning, L.M., Fuganti-Pagliarini, R., Nepomuceno, A.L., Nakayama, T.J., Molinari, H.B., Basso, M.F., Harmon, F.G. 2017. Functional characterization of a putative glycine max ELF4 transgenic aradopsis and its role during flowering control. Frontiers in Plant Science. 8:618. doi:10.3389/fpls.201.00618.

Accurate measure of transgene copy number in crop plants using droplet digital PCR - (Peer Reviewed Journal)
Collier, R.A., Xing, Y., Lin, J.W., Mc Cue, K.F., Blechl, A.E., Thomson, J.G., Thilmony, R.L., Dasgupta, K., Hernandez, B.T., Shao, M., Oliveira, M.L., Stover, E.W., Novak, E., Harmon, F.G., Rohozinski, D. 2017. Accurate measure of transgene copy number in crop plants using droplet digital PCR. Plant Journal. 9(5):1014-1025 doi: 10.1111/TPJ.13517.

The Arabidopsis sickle mutant exhibits altered circadian clock responses to cool tempatures and tempature-dependent alternative splicing - (Peer Reviewed Journal)
Marshall, C., Tartaglio, V., Duarte, M., Harmon, F.G. 2016. The Arabidopsis sickle mutant exhibits altered circadian clock responses to cool tempatures and tempature-dependent alternative splicing. The Plant Cell. 28(10):2560-2575. doi:10.1105/tpc.16.00223.

Temporal shift of circadian-mediated gene expression and carbon fixation contributes to biomass heterosis in maize hybrids - (Peer Reviewed Journal)
Ko, D., Song, Q., Rohozinski, D., Taylor, S., Juenger, T.E., Harmon, F.G., Chen, Z. 2016. Temporal shift of circadian-mediated gene expression and carbon fixation contributes to biomass heterosis in maize hybrids. PLoS Genetics. 12(7):e1006197.

Transcriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day - (Peer Reviewed Journal)
Gomes, J.M., Rodrigues, F.A., Fuganti-Pagliarini, R., Nakayama, T.J., Reis, R., Farias, J.B., Harmon, F.G., Nepomuceno, A.L. 2015. Transcriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day. PLoS One. 10(9):e0139051.

Daytime soybean transcriptome fluctuations during water deficit stress - (Peer Reviewed Journal)
Rodrigues, F.A., Fuganti-Pagliarini, R., Gomes, J.M., Nakayama, T.J., Molinari, H.C., Lobo, F.P., Harmon, F.G., Nepomuceno, A.L. 2015. Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics. 16:505. doi:10.1186/s12864-015-1731-x.

Circadian clock genes universally control key agricultural traits - (Peer Reviewed Journal)
Benedix, C., Marshall, C., Harmon, F.G. 2015. Circadian clock genes universally control key agricultural traits. Molecular Plant. 8:1135-52.

Setaria viridis floral-dip: A simple and rapid Agrobacterium-medicated transformation method - (Peer Reviewed Journal)
Martins, P.K., Nakayama, T.J., Ribeiro, A.P., Brio Da Cunha, B.A., Nepomuceno, A., Harmon, F.G., Kobayashi, A.K., Molinari, H.C. 2015. Setaria viridis floral-dip: A simple and rapid Agrobacterium-medicated transformation method. Plant Biotechnology. 6:61-63.

Gibberllin driven growth in elf3 mutants requires PIF4 and PIF5 - (Peer Reviewed Journal)
Harmon, F.G., Thines, B., Wu, A., Filo, J., Eliason, E. 2015. Gibberllin driven growth in elf3 mutants requires PIF4 and PIF5. Plant Signaling and Behavior. 10(3):e992707). doi: 10.4161/15592324.2014.992707.

Diurnal oscillations of soybean circadian clock and drought responsive genes - (Peer Reviewed Journal)
Gomes, J.M., Rodrigues, F.A., Fuganti-Pagliarini, R., Nakayama, T.J., Bendix, C., Celeya, R., Molinari, H.B., Nepomuceno, A.L., Harmon, F.G. 2014. Diurnal oscillations of soybean circadian clock and drought responsive genes. PLoS One. 9(1):e86402. doi:10.1371/journal.pone.0086402.

The time of day effects of warm temperature on flowering time involve PIF4 and PIF5 - (Peer Reviewed Journal)
Thines, B.C., Youngwon, Y., Duarte, M.I., Harmon, F.G. 2014. The time of day effects of warm temperature on flowering time involve PIF4 and PIF5. Journal of Experimental Botany. 65(4):1141-51. DOI: 10.1093/jxb/ert487.