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United States Department of Agriculture

Agricultural Research Service

Research Project: SoyBase and the Legume Clade Database

Location: Corn Insects and Crop Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution - (Peer Reviewed Journal)
Hane, J.K., Yao, M., Kamphuis, L.G., Nelson, M.N., Atkins, C.A., Bravo, A., Bringans, S., Cannon, S.B., Huang, W., Cullerne, D., Foley, R., Garg, G., Gao, L., Harrison, M., Li, S., Mcgrath, A., Morahan, G., Taylor, J., Weller, J., Jianbo, J., Singh, K.B. 2016. A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution. Plant Biotechnology Journal. doi: 10.1111/pbi.12615.

Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.) - (Peer Reviewed Journal)
Martin, K., Jugpreet, S., Hill, J.H., Whitham, S., Cannon, S.B. 2016. Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.). Biomed Central (BMC) Genomics. doi:10.1186/s12864-016-2976-8.

Characterization and development mechanism of Apios americana tuber starch - (Peer Reviewed Journal)
Yangcheng, H., Belamkar, V., Cannon, S.B., Jane, J. 2016. Characterization and development mechanism of Apios americana tuber starch. Carbohydrate Polymers. 151:198-205. doi:10.1016/j.carbpol.2016.05.062.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut - (Peer Reviewed Journal)
Bertioli, D., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E., Dash, S., Liu, X., Barkley, N.L., Guo, B., Scheffler, B.E., et al. 2016. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. 48:438-446. doi: 10.1038/ng.3517.

Legume Information System (LegumeInfo.org): a key component of a set of federated data resources for the legume family - (Peer Reviewed Journal)
Dash, S., Campbell, J.D., Cannon, E., Cleary, A.M., Huang, W., Kalberer, S.R., Karingula, V., Rice, A.G., Singh, J., Umale, P.E., Weeks, N.T., Wilkey, A.P., Farmer, A.D., Cannon, S.B. 2015. Legume Information System (LegumeInfo.org): a key component of a set of federated data resources for the legume family. 2016. Nucleic Acids Research. 44 (D1):D1181-D1188. doi: 10.1093/nar/gkv1159.

An ontology approach to comparative phenomics in plants - (Peer Reviewed Journal)
Oellrich, A., Walls, R.L., Cannon, E., Cannon, S.B., Cooper, L., Gardiner, J., Gkoutos, G.V., Harper, E.C., He, M., Hoehndorf, R., Jaiswal, P., Kalberer, S.R., Lloyd, J., Meinke, D., Menda, N., Moore, L., Nelson, R., Pujar, A., Lawrence, C.J., Huala, E. 2015. An ontology approach to comparative phenomics in plants. Plant Methods. 11:10. DOI: 10.1186/s13007-015-0053-y.

PeanutBase and other bioinformatic resources for peanut - (Book / Chapter)
Dash, S., Cannon, E., Kalberer, S.R., Farmer, A.D., Cannon, S.B. 2016. PeanutBase and other bioinformatic resources for peanut. In: Stalker, T.H., Wilson, R.F., editors. Peanuts: Genetidcs, Processing, and Utilization (AOCS Monograph Series on Oilseeds). Waltham, MA: Academic Press and AOCS Press. p. 241-252.

Multiple polyploidy events in the early radiation of nodulating and non-nodulating legumes - (Peer Reviewed Journal)
Cannon, S.B., McKain, M.R., Harkess, A., Nelson, M.N., Dash, S., Deyholos, M.K., Peng, Y., Joyce, B., Stewart, C.N., Rolf, M., Kutchan, T., Xuemei, T., Chen, C., Zhang, Y., Carpenter, E., Wong, G., Doyle, J., Leebens-Mack, J. 2014. Multiple polyploidy events in the early radiation of nodulating and non-nodulating legumes. Molecular Biology and Evolution. 32(1):193-210. DOI: 10.1093/molbev/msu296.

Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress - (Peer Reviewed Journal)
Belamkar, V., Weeks, N.T., Bharti, A.K., Farmer, A.D., Graham, M.A., Cannon, S.B. 2014. Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress. Biomed Central (BMC) Genomics. 15:950. DOI:10.1186/1471-2164-15-950.

Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean - (Abstract Only)
Bolon, Y., Stec, A.O., Michno, J., Roessler, J., Bhaskar, P.B., Ries, L., Dobbels, A.A., Campbell, B.W., Young, N.P., Anderson, J.E., Grant, D.M., Orf, J.H., Naeve, S.L., Muehlbauer, G.J., Vance, C.P., Stupar, R.M. 2014. Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean. Genetics. DOI:10.1534/genetics.114.170340.

Occurrence and characterization of Bean common mosaic virus strain NL1 in Iowa - (Peer Reviewed Journal)
Martin, K.M., Hill, J.H., Cannon, S.B. 2014. Occurrence and characterization of Bean common mosaic virus strain NL1 in Iowa. Plant Disease. 98(11):1593. DOI: 10.1094/PDIS-07-14-0673-PDN.

Comprehensive transcriptome assembly of chickpea (Cicer arietinum L.) using Sanger and next generation sequencing platforms: development and applications - (Peer Reviewed Journal)
Kudapa, H., Azam, S., Sharpe, A.G., Taran, B., Li, R., Deonovic, B., Cameron, C., Farmer, A.D., Cannon, S.B., Varshney, R.K. 2014. Comprehensive transcriptome assembly of chickpea (Cicer arietinum L.) using Sanger and next generation sequencing platforms: development and applications. PLoS One. 9(1):e86039. DOI: 10.1371/journal.pone.0086039.

De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity - (Peer Reviewed Journal)
Haas, B.J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P.D., Bowden, J., Couger, M.B., Eccles, D., Li, B., Lieber, M., Weeks, N.T. 2013. De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity. Nature Protocols. 8(8):1494-1512.

Last Modified: 04/28/2017
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