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United States Department of Agriculture

Agricultural Research Service

Related Topics

Research Project: Conservation, Genetic Analyses, and Utilization of Subtropical/Tropical Fruit Crops, Sugarcane, and Miscanthus Genetic Resources

Location: Subtropical Horticulture Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Novel Applications of Multi-task Learning and Multiple Output Regression to Multiple Genetic Trait Prediction - (Peer reviewed journal)
He, D., Kuhn, D.N., Parida, L. 2016. Novel Applications of Multi-task Learning and Multiple Output Regression to Multiple Genetic Trait Prediction. Bioinformatics. 32(12):i37-i43.

A genetic map and germplasm diversity estimation of Mangifera indica (mango) with SNPs - (Abstract only)
Kuhn, D.N., Amir, S., Yuval, C., Ophir, R., Groh, A., Rahaman, J., Sanchez, P., Dillon, N., Bally, I., Innes, D. 2016. A genetic map and germplasm diversity estimation of Mangifera indica (mango) with SNPs.

Development of single nucleotide polymorphism (SNP) markers from the mango (Mangiferaindica) transcriptome for mapping and estimation of genetic diversity - (Peer reviewed journal)
Kuhn, D.N., Dillon, N.L., Innes, D.J., Wu, L., Mockaitis, K. 2016. Development of single nucleotide polymorphism (SNP) markers from the mango (Mangiferaindica) transcriptome for mapping and estimation of genetic diversity. Acta Hortic. 1111, 315-322 DOI: 10.17660/ActaHortic.2016.1111.45.http://dx.doi.org/10.17660/ActaHortic.2016.1111.45

Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening - (Peer reviewed journal)
Kuhn, D.N., Mitzuko, D., Adrian, O., Carme, C.R., Magda, P., Sergio, C., Alejandro, S., Maria, I. 2015. Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening. Frontiers in Plant Science. 6:62 doi: 10.3389/flps.2015.00062.

Topological Signatures for Population Admixture - (Peer reviewed journal)
Kuhn, D.N., Deniz, Y., Filipo, U., Laxmi, P., Saugata, B. 2015. Topological Signatures for Population Admixture. Research Computational Molecular Biology (RECOMB). LNBI 9029, pp 261-275.

Physico-chemical evaluation of Dovyalis spp - (Proceedings)
Ayala Silva, T., Salas, A., Gubbuk, H., Reed, S.T., Winterstein, M.C., Ledesma, N. 2015. Physico-chemical evaluation of Dovyalis spp. Florida State Horticulture Society and Citrus Industry.Proceedings 2014.

Mangos of Puerto Rico, country contribution: Puerto Rico - (Book / chapter)

Mangos of Florida, country contribution: Florida - (Book / chapter)

Chapter 8. Avocado history, biodiversity and production - (Book / chapter)

The World Sugarcane and Related Grasses Collection at USDA/ARS Genebank Repository in Miami, Florida, USA - (Peer reviewed journal)
Ayala Silva, T. 2014. The World Sugarcane and Related Grasses Collection at USDA/ARS Genebank Repository in Miami, Florida, USA. Pakistan Journal of Botany.November 2014.

Characterization and evaluation of five jaboticaba accessions at the subtropical horticulture research station in Miami, Florida - (Abstract only)

Morphological and physio-chemical characterization of five Canistel accessions at the subtropical horticulture research station in Miami Florida - (Abstract only)

Morphological and chemical characterization of the kei apple (Dovyalis spp) - (Abstract only)

Physico-chemical evaluation of the “Casturi” Mango - (Proceedings)
Ayala Silva, T., Gubbuk, H., Urbina, C. 2013. Physico-chemical evaluation of the “Casturi” Mango. Proceedings of Florida State Horticultural Society. 126:17-20.

iXora1: exact haplotype inferencing and trait association - (Peer reviewed journal)
Utro, F., Haiminen, N., Livingstone Iii, D., Cornejo, O.E., Royaert, S., Schnell, R.J., Motamayor, J.C., Kuhn, D.N., Parida, L. 2013. iXora1: exact haplotype inferencing and trait association. BioMed Central (BMC) Genetics. 14:48.

Breaking seed coat dormancy with physical and chemical methods in tamarind (Tamarindus indica L.) seeds - (Peer reviewed journal)
Ayala Silva, T., Gubbuk, H., Gordon, G. 2013. Breaking seed coat dormancy with physical and chemical methods in tamarind (Tamarindus indica L.) seeds. Journal of Agriculture of the University of Puerto Rico. 97(1-2):87-96.

Physico-chemical evaluation of the “Casturi” Mango - (Abstract only)

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color - (Peer reviewed journal)
Motamayor, J.C., Mockaitis, K., Schmutz, J., Haiminen, N., Livinstone Iii, D., Cornejo, O., Findley, S., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B.E., Stack, J.C., Feltus, A., Mustiga, G., Amores, F., Phillips, W., Marelli, J., May, G.D., Shapiro, H., Ma, J., Bustamante, C.D., Schnell, R.J., Main, D., Gilbert, D., Parida, L., Kuhn, D.N. 2013. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biology. Genome Biology 2013, 14:R53 doi:10.1186/gb-2013-14-6-r53.

Agronomic performance of five banana cultivars under protected cultivation - (Abstract only)

Two new promising cultivars of mango for Florida - (Abstract only)

iXora: Haplotype Inferencing and Trait Association - (Abstract only)
Utro, F., Haiminen, N., Livingstone Iii, D.S., Cornejo, O., Royaert, S., Schnell, R.J., Motamayor, J., Kuhn, D.N., Parida, L. 2013. iXora: Haplotype Inferencing and Trait Association . Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.

Impact Of Selfing On The Inference Of Demographic History From Whole Genomes In Theobroma cacao L. - (Abstract only)
Cornejo, O., Kuhn, D.N., Livingstone Iii, D.S., Mockaitis, K., Royaert, S., Findley, S.D., Mustiga, G., Schnell, R.J., Bustamante, C., Motamayor Arias, J. 2013. Impact Of Selfing On The Inference Of Demographic History From Whole Genomes In Theobroma cacao L.. Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.

Generation of a Saturated Genetic Recombination Map for Avocado (Persea americana) - (Abstract only)
Borrone JW, Brown JS, Tondo CL, Mauro-Herrera M, Kuhn DN, Violi HA, Sautter RT, Schnell RJ (2009) An EST-SSR-based linkage map for Persea americana Mill. (avocado). Tree Genet Genomes 5 (4):553-560. doi:10.1007/s11295-009-0208-y

The Role Of Haplotyping In Mapping The Pod Color Trait - (Abstract only)
Haiminen, N., Livingstone Iii, D.S., Cornejo, O., Utro, F., Royaert, S., Mockaitis, K., Motamayor Arias, J., Parida, L., Kuhn, D.N. 2013. The Role Of Haplotyping In Mapping The Pod Color Trait. Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.

The Genome of the Most Widely Cultivated Cacao Type and Its Use to Identify Candidate Genes Regulating Traits: Pod Color as an Example - (Abstract only)
Motamayor Arias, J., Mockaitis, K., Schmutz, J., Haiminen, N., Livingstone Iii, D.S., Cornejo, O., Findley, S.D., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B.E., Feltus, A.F., Amores, F.M., Phillips, W., Marelli, J., May, G., Shapiro, H., Ma, J., Bustamante, C., Schnell, R.J., Main, D., Gilbert, D., Parida, L., Kuhn, D.N. 2013. The Genome of the Most Widely Cultivated Cacao Type and Its Use to Identify Candidate Genes Regulating Traits: Pod Color as an Example. Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.

Towards The Identification Of Candidate Genes Involved In Witches' Broom Disease Resistance In Theobroma cacao L. - (Abstract only)
Royaert, S., Moore, M.J., Santos Araujo, I., Viana Da Silva, D., Martins De Jesus, S., Livingstone Iii, D.S., Marelli, J., Kuhn, D.N., Gutierrez, O.A., Correa, R.X., Schnell, R.J., Motamayor Arias, J. 2013. Towards The Identification Of Candidate Genes Involved In Witches' Broom Disease Resistance In Theobroma cacao L.. Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.

World Saccharum Collection at the USDA Subtropical Research Station, National Germplasm Repository Miami, Florida - (Abstract only)

Race, Interracial Admixture and Genetic Differentiation of Avocado (Persea americana Mill) - (Abstract only)
Boza, E.J., Tondo, C.L., Kuhn, D.N., Meerow, A.W., Moore, M.J., Campbell, R., Ledesma, N., Gutierrez, O.A., Schnell, R.J. 2012. Race, Interracial Admixture and Genetic Differentiation of Avocado (Persea americana Mill). Meeting Abstract. Supplement of HortScience Volume 47(9) September 2012.

QTL mapping for Cold Tolerance and Flower Type in a Reciprocal F1 Florida Avocado Mapping population - (Abstract only)
Gutierrez, O.A., Schnell, R.J., Kuhn, D.N., Tondo, C.L., Borrone, J.W. 2012. QTL mapping for Cold Tolerance and Flower Type in a Reciprocal F1 Florida Avocado Mapping population. Meeting Abstract. Supplement to HortScience Volume 47(9) September 2012.

Last Modified: 2/23/2016
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