Skip to main content
ARS Home » Pacific West Area » Aberdeen, Idaho » Small Grains and Potato Germplasm Research » Research » Research Project #424532

Research Project: Genetic Improvement of Barley and Oats for Enhanced Quality and Biotic Stress Resistance

Location: Small Grains and Potato Germplasm Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Discontinuous and repeatable peaks of small interfering RNAs mapping to TRI6 associated with deoxynivalenol reductions by RNA interference in Fusarium graminearum Reprint Icon - (Peer Reviewed Journal)
Baldwin, T.T., Bregitzer, P.P., Esvelt Klos, K.L., Islamovic, E., Schwartz, P., Gillespie, J. 2018. Discontinuous and repeatable peaks of small interfering RNAs mapping to TRI6 associated with deoxynivalenol reductions by RNA interference in Fusarium graminearum. Fungal Genetics and Biology. 13(8):Article 0202798. https://doi.org/10.1371/journal.pone.0202798.

New sources of adult plant and seedling resistance to Puccinia coronata f. sp. avenae identified among Avena sativa accessions of the national small grains collection Reprint Icon - (Peer Reviewed Journal)
Yimer, B., Gordon, T.C., Harrison, S., Kianian, S., Bockelman, H.E., Bonman, J.M., Esvelt Klos, K.L. 2018. New sources of adult plant and seedling resistance to Puccinia coronata f. sp. avenae identified among Avena sativa accessions of the national small grains collection. Plant Disease. https://doi.org/10.1094/PDIS-04-18-0566-RE.

Genome-wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley Reprint Icon - (Peer Reviewed Journal)
Tripathi, R.K., Singh, J., Bregitzer, P.P. 2018. Genome-wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley. Scientific Reports. 8:7085. https://doi.org/10.1038/s41598-018-25349-0.

miR172 down-regulates the translation of cleistogamy 1 in barley Reprint Icon - (Peer Reviewed Journal)
Anwar, N., Ohta, M., Yazawa, T., Sato, Y., Li, C., Tagiri, A., Sakuma, M., Nussbaumer, T., Bregitzer, P.P., Pourkheirandish, M., Wu, J., Komatsuda, T. 2018. miR172 down-regulates the translation of cleistogamy 1 in barley. Annals Of Botany. https://doi.org/10.1093/aob/mcy058.

Sharing mutants and experimental information prepublication using FgMutantDB Reprint Icon - (Peer Reviewed Journal)
Baldwin, T.T., Basenko, E., Harb, O., Brown, N., Hammond-Kosack, K.E., Bregitzer, P.P. 2018. Sharing mutants and experimental information prepublication using FgMutantDB. Fungal Genetics and Biology. 115:90-93. https://doi.org/10.1016/j.fgb.2018.01.002.

In silico selection of expression reference genes with demonstrated stability in barley among a diverse set of tissues and cultivars Reprint Icon - (Peer Reviewed Journal)
Gines, M.C., Baldwin, T.T., Rashid, A., Bregitzer, P.P., Jellen, E., Maughan, J., Esvelt Klos, K.L. 2018. In silico selection of expression reference genes with demonstrated stability in barley among a diverse set of tissues and cultivars. Crop Science. 58(1):332-341. https://doi.org/10.2135/cropsci2017.07.0443.

Genetic variation and associations involving Fusarium head blight and deoxynivalenol accumulation in cultivated oat (Avena sativa L.) Reprint Icon - (Peer Reviewed Journal)
Bjornstad, A., He, X., Tekle, S., Esvelt Klos, K.L., Huang, Y., Tinker, N.A., Dong, Y., Skinnes, H. 2017. Genetic variation and associations involving Fusarium head blight and deoxynivalenol accumulation in cultivated oat (Avena sativa L.). Plant Breeding. 136:620-636. https://doi.org/10.1111/pbr.12502.

Genome-wide association mapping of crown rust resistance in oat elite germplasm - (Peer Reviewed Journal)
Esvelt Klos, K.L., Yimer, B.A., Babiker, E.M., Beattie, A.D., Bonman, J.M., Carson, M.L., Chong, J., Harrison, S.A., Ibrahim, A.H., Kolb, F.L., McCartney, C.A., McMullen, M., Mitchell Fetch, J., Mohammadi, M., Murphy, J.P., Tinker, N.A. 2017. Genome-wide association mapping of crown rust resistance in oat elite germplasm. The Plant Genome. doi: 10.3835/plantgenome2016.10.0107.

A high-throughput RNA extraction for sprouted single-seed malting barley (Hordeum vulgare L.) rich in polysaccharides - (Peer Reviewed Journal)
Rashid, A., Baldwin, T.T., Gines, M., Bregitzer, P.P., Esvelt Klos, K.L. 2016. A high-throughput RNA extraction for sprouted single-seed malting barley (Hordeum vulgare L.) rich in polysaccharides. Plants. 6(1):1. doi: 10.3390/plants6010001.

Registration of Sawtooth low-phytate, hulled spring barley - (Germplasm Registration)
Bregitzer, P.P., Hu, G., Marshall, J.M., Raboy, V. 2017. Registration of Sawtooth low-phytate, hulled spring barley. Journal of Plant Registrations. 11:81-84.

Population structure and genotype-phenotype associations in a collection of oat landraces and historic cultivars. - (Peer Reviewed Journal)
Winkler, L., Bonman, J.M., Chao, S., Yimer, B.A., Bockelman, H.E., Esvelt Klos, K.L. 2016. Population structure and genotype-phenotype associations in a collection of oat landraces and historic cultivars. Frontiers in Plant Science. doi: 10.3389/fpls.2016.01077.

Population genetics related to adaptation in elite oat germplasm - (Peer Reviewed Journal)
Esvelt Klos, K.L., Huang, Y., Babiker, E.M., Beattie, A., Bekele, W.A., Bjornstad, A., Bonman, J.M., Carson, M.L., Chao, S., Gnanesh, B.N., Harrison, S.A., Howarth, C.J., Hu, G., Ibrahim, A., Islamovic, E., Jackson, E.W., Jannink, J., Kolb, F.L., Mcmullen, M.S., Fetch, J.M., Murphy, J., Obert, D.E., Ohm, H.W., Rines, H.W., Rossnagel, B., Schuleter, J.A., Wight, C.P., Yan, W., Tinker, N.A. 2016. Population genetics related to adaptation in elite oat germplasm. The Plant Genome. 9(2):1-12. doi: 10.3835/plantgenome2015.10.0103.

Extraction of high-quality RNA from germinating barley (Hordeum vulgare L.) seeds containing high levels of starch. - (Abstract Only)
Rashid, A., Gines, M., Baldwin, T.T., Esvelt Klos, K.L., Bregitzer, P.P. 2016. Extraction of high-quality RNA from germinating barley (Hordeum vulgare L.) seeds containing high levels of starch.. Proceedings International Barley Genetics Symposium. p.155.

Barley stripe rust resistance QTL: Development and validation of SNP markers for resistance to Puccinia striiformis f. sp. hordei - (Peer Reviewed Journal)
Esvelt Klos, K.L., Gordon, T.C., Bregitzer, P.P., Hayes, P., Chen, X., Bonman, J.M. 2016. Barley stripe rust resistance QTL: Development and validation of SNP markers for resistance to Puccinia striiformis f. sp. hordei. Phytopathology. doi: 10.1094/PHYTO-09-15-0225-R.

Registration of ‘Kardia’, a Two-Rowed Spring Food Barley - (Peer Reviewed Journal)
Hu, G., Evans, C.P., Satterfield, K.L., Ellberg, S., Marshall, J., Obert, D. 2016. Registration of ‘Kardia’, a Two-Rowed Spring Food Barley. Journal of Plant Registrations. 10:213-216.

A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial sub-genome rearrangement - (Peer Reviewed Journal)
Chaffin, A.S., Huang, Y., Smith, S., Bekele, W.A., Babiker, E.M., Gnanesh, B.N., Foresman, B.J., Blanchard, S.G., Jay, J.J., Reid, R.W., Wight, C.P., Chao, S., Oliver, R., Islamovic, E., Kolb, F.L., McCartney, C., Mitchell Fetch, J.W., Beattie, A.D., Bjornstad, A., Bonman, J.M., Langdon, T., Howarth, C.J., Brouwer, C.R., Jellen, E.N., Esvelt Klos, K.L., Poland, J., Hsieh, T., Brown, R., Jackson, E., Schlueter, J.A., Tinker, N.A. 2016. A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial sub-genome rearrangement. The Plant Genome. 9(2). doi: 10.3835/plantgenome2015.10.0102.

Candidate qRT-PCR reference genes for barley that demonstrate better stability than traditional housekeeping genes - (Abstract Only)
Gines, M.C., Baldwin, T.T., Rashid, A., Esvelt Klos, K.L., Bregitzer, P.P., Jellen, E., Maughan, J. 2016. Candidate qRT-PCR reference genes for barley that demonstrate better stability than traditional housekeeping genes. Proceedings International Barley Genetics Symposium. p.63.

Registration of Harriman low-phytate, hulled spring barley - (Germplasm Registration)
Bregitzer, P.P., Hu, G., Marshall, J.M., Raboy, V. 2016. Registration of Harriman low-phytate, hulled spring barley. Journal of Plant Registrations. 10:105-108.

Analysis of the small interfering RNA profiles of randomly inserted pTRM-TRI6 Fusarium graminearum mutants and their DON related phenotypes - (Abstract Only)
Baldwin, T.T., Bregitzer, P.P. 2015. Analysis of the small interfering RNA profiles of randomly inserted pTRM-TRI6 Fusarium graminearum mutants and their DON related phenotypes. National Fusarium Head Blight Forum 2015, St. Louis MO, December 6-8, 2015, p.43.

Chromosome-anchored QTL conferring aluminum tolerance in hexaploid oat - (Peer Reviewed Journal)
Schneider, A.B., Nava, I.C., Herve, C.B., Islamovic, E., Limberger, E., Jackson, E.W., Delatorre, C.A. 2015. Chromosome-anchored QTL conferring aluminum tolerance in hexaploid oat. Molecular Breeding. 35:121. doi: 10.1007/s11032-015-0315-4.

Genetic diversity for Russian wheat aphid resistance as determined by genome-wide association mapping and inheritance in progeny - (Peer Reviewed Journal)
Dahleen, L.S., Bregitzer, P.P., Mornhinweg, D.W., Esvelt Klos, K.L. 2015. Genetic diversity for Russian wheat aphid resistance as determined by genome-wide association mapping and inheritance in progeny. Crop Science. 55(5):1925-1933.

Genetic basis and detection of unintended effects in genetically modified crop plants - (Peer Reviewed Journal)
Ladics, G.S., Bartholomaeus, A., Bregitzer, P.P., Doerrer, N.G., Gray, A., Holzhauser, T., Jordan, M., Keese, P., Kok, E., Macdonald, P., Parrott, W., Privalle, L., Raybould, A., Rhee, S., Rice, E., Romeis, J., Vaughn, J., Wal, J., Glenn, K. 2015. Genetic basis and detection of unintended effects in genetically modified crop plants. Transgenic Research. 24:587-603.

Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley - (Peer Reviewed Journal)
Brown, R.H., Singh, J., Singh, S., Dahleen, L.S., Lemaux, P.S., Stein, N., Mascher, M., Bregitzer, P.P. 2015. Behavior of a synthetic Dissociation element in barley: A novel tool for genetic studies and for breeding transgenic barley. Molecular Breeding. 35:85.

Identification and characterization of a partially functional mutation of the cellulose-synthase-like (CslF6) gene in barley (Hordeum vulgare L.) - (Peer Reviewed Journal)
Hu, G., Burton, C., Hong, Z., Jackson, E. 2014. Identification and characterization of a partially functional mutation of the cellulose-synthase-like (CslF6) gene in barley (Hordeum vulgare L.). Journal of Cereal Science. 59:189-195.

A promising low beta-glucan barley mutation of m351 for better bioethanol production use - (Peer Reviewed Journal)
Hu, G., Trupia, S., Ellberg, S. 2015. A promising low beta-glucan barley mutation of m351 for better bioethanol production use. BioEnergy Research. 8:1158-1164.

Quantitative trait loci from two genotypes of oat (Avena sativa L.) conditioning resistance to Puccinia coronata Reprint Icon - (Peer Reviewed Journal)
Babiker, E.M., Gordon, T.C., Obert, D.E., Jackson, E.W., Harrison, S.A., Chao, S., Carson, M.L., Bonman, J.M. 2015. Quantitative trait loci from two genotypes of oat (Avena sativa L.) conditioning resistance to Puccinia coronata. Phytopathology. 105(2):239-245.

Registration of ‘Merem’ spring malting barley - (Peer Reviewed Journal)
Hu, G., Obert, D., Evans, C.P., Satterfield, K.L., Ellberg, S., Marshall, J., Budde, A.D., Martens, C.H. 2014. Registration of ‘Merem’ spring malting barley. Journal of Plant Registrations. 8:233-235.

Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley Reprint Icon - (Peer Reviewed Journal)
Oliver, R.E., Islamovic, E., Obert, D.E., Wise, M.L., Herrin, L.L., Hang, A., Harrison, S.A., Ibrahim, A., Marshall, J.M., Miclaus, K.J., Lazo, G.R., Chao, S., Hu, G., Jackson, E. 2014. Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley. PLoS One. 9:e96276.

Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population Reprint Icon - (Peer Reviewed Journal)
Islamovic, E., Obert, D., Budde, A.D., Schmitt, M., Brunick II, R., Kilian, A., Chao, S., Lazo, G.R., Marshall, J., Jellen, E., Maughan, P., Hu, G., Esvelt Klos, K.L., Brown, R., Jackson, E. 2014. Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population. Molecular Breeding. DOI: 10.1007/s11032-014-0017-3.

Registration of the barley transposon-tagged population I:seventy lines each with a single, unique site of Ds insertion - (Germplasm Registration)
Brown, R., Dahleen, L.S., Lemaux, P.G., Bregitzer, P.P. 2014. Registration of the barley transposon-tagged population I:seventy lines each with a single, unique site of Ds insertion. Journal of Plant Registrations. 8:226-230.

Identifying the loci that influence quantitative trait variation in oats: Lessons from human population-based GWAS Reprint Icon - (Abstract Only)
Esvelt Klos, K.L. 2014. Identifying the loci that influence quantitative trait variation in oats: Lessons from human population-based GWAS. Plant and Animal Genome VX Conference Abstracts. PAGXXII, Jan 11-15, 2014.

Down with DON: Strategies for precise transgene delivery and rnai-based suppression of fusarium - (Abstract Only)