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United States Department of Agriculture

Agricultural Research Service

Research Project: Modification of Soybeans for Food, Feed, and Industrial Applications

Location: Plant Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

The absence of the N-acyl-homoserine-lactone autoinducer synthase genes tral and ngrl increases the copy number of the symbiotic plasmid in sinorhizobium fredii NGR234 - (Peer Reviewed Journal)
Grote, J., Krysciak, D., Petersen, K., Gullert, S., Schmeisser, C., Forstner, K., Krishnan, H.B., Schwalbe, H., Kubatova, N., Streit, W. 2016. The absence of the N-acyl-homoserine-lactone autoinducer synthase genes tral and ngrl increases the copy number of the symbiotic plasmid in sinorhizobium fredii NGR234. Frontiers in Microbiology. 7:1858. Available: http://dx.doi.org/10.3389/fmicb.2016.01858.

Characterization of seed storage proteins of several perennial glycine species - (Peer Reviewed Journal)
Song, B., Oehrle, N.W., Liu, S., Krishnan, H.B. 2016. Characterization of seed storage proteins of several perennial glycine species. Journal of Agricultural and Food Chemistry. 64:8499-8508. doi:10.1021/acs.jafc.6b03677.

Kunitz trypsin inhibitor in addition to Bowman-Birk inhibitor influence stability of lunasin against pepsin-pancreatin hydrolysis - (Peer Reviewed Journal)
Price, S.J., Pangloli, P., Krishnan, H.B., Dia, V.P. 2016. Kunitz trypsin inhibitor in addition to Bowman-Birk inhibitor influence stability of lunasin against pepsin-pancreatin hydrolysis. Food Research International. 90:205-215. Available: http://dx.doi.org/10.1016/j.foodres.2016.10.051.

BG-4, a novel anticancer peptide from bitter gourd (Momordica charantia), promotes apoptosis in human colon cancer cells - (Peer Reviewed Journal)
Dia, V.P., Krishnan, H.B. 2016. BG-4, a novel anticancer peptide from bitter gourd (Momordica charantia), promotes apoptosis in human colon cancer cells. Scientific Reports. doi:10.1038/srep33532.

Import of a major mitochondrial enzyme depends on synergy between two distinct helices of its presequence - (Other)

Transcriptome profile of near-isogenic soybean lines for ß-conglycinin a-subunit deficiency during seed maturation - (Peer Reviewed Journal)
Song, B., An, L., Han, Y., Gao, H., Ren, H., Zhao, X., Wei, X., Krishnan, H.B., Liu, S. 2016. Transcriptome profile of near-isogenic soybean lines for ß-conglycinin a-subunit deficiency during seed maturation. PLoS One. 11(8):e0159723. doi:10.1371/journal.pone.0159723.

Immunological investigation for the presence of lunasin, a chemopreventive soybean peptide, in the seeds of diverse plants - (Peer Reviewed Journal)
Alaswad, A.A., Krishnan, H.B. 2016. Immunological investigation for the presence of lunasin, a chemopreventive soybean peptide, in the seeds of diverse plants. Journal of Agricultural and Food Chemistry. 64:2901-2909. doi: 10.1021/acs.jafc.6b00445.

Environmental stability of seed carbohydrate profiles in soybeans containing different alleles of the raffinose synthase 2 (RS2) gene Reprint Icon - (Peer Reviewed Journal)
Bilyeu, K.D., Wiebold, W.J. 2016. Environmental stability of seed carbohydrate profiles in soybeans containing different alleles of the raffinose synthase 2 (RS2) gene. Journal of Agricultural and Food Chemistry. 64:1071-1078.

Do cupins have a function beyond being seed storage proteins? An updated working model for the growth and reproductive success of flax (Linum usitatissimum) in a radio-contaminated environment - (Peer Reviewed Journal)

Impact of heat stress during seed development on soybean seed metabolome Reprint Icon - (Peer Reviewed Journal)
Chebrolu, K., Fritschi, F., Ye, S., Krishnan, H.B., Smith, J.R., Gillman, J.D. 2016. Impact of heat stress during seed development on soybean seed metabolome. Metabolomics. 12(2):28.

Metabolomic profiling from leaves and roots of tomato (Solanum lycopersicum L.) plants grown under nitrogen, phosphorus or potassium-deficient condition - (Peer Reviewed Journal)
Sung, J., Lee, S., Lee, Y., Ha, S., Song, B., Kim, T., Waters, B.M., Krishnan, H.B. 2015. Metabolomic profiling from leaves and roots of tomato (Solanum lycopersicum L.) plants grown under nitrogen, phosphorus or potassium-deficient condition. Plant Science. 241:55-64. doi: 10.1016/j.plantsci.2015.09.027.

Analysis of soybean tissue culture protein dynamics using difference gel electrophoresis Reprint Icon - (Peer Reviewed Journal)
Miernyk, J.A., Jett, A., Johnston, M.L. 2015. Analysis of soybean tissue culture protein dynamics using difference gel electrophoresis. Journal of Proteomics. 130:56-64.

High-throughput and functional SNP detection assays for oleic and linolenic acids in soybean Reprint Icon - (Peer Reviewed Journal)
Shi, Z., Bachleda, N., Pham, A.T., Bilyeu, K.D., Shannon, G.J., Nguyen, H., Li, Z. 2015. High-throughput and functional SNP detection assays for oleic and linolenic acids in soybean. Molecular Breeding. 35(8):176.

A new low linolenic acid allele of GmFAD3A gene in soybean PE1690 Reprint Icon - (Peer Reviewed Journal)
Kim, M., Song, J., Bilyeu, K.D., Lee, J. 2015. A new low linolenic acid allele of GmFAD3A gene in soybean PE1690. Molecular Breeding. 35(8):155.

Nodulation outer proteins: double-edged swords of symbiotic rhizobia - (Review Article)
Staehelin, C., Krishnan, H.B. 2015. Nodulation outer proteins: double-edged swords of symbiotic rhizobia. Biochemical Journal. 470:263-274. doi:10.1042/BJ20150518.

Analysis of the siRNA-mediated gene silencing process targeting three homologous genes controlling soybean seed oil quality Reprint Icon - (Peer Reviewed Journal)
Lu, S., Yin, X., Spollen, W., Zhang, N., Xu, D., Schoelz, J., Bilyeu, K.D., Zhang, Z.J. 2015. Analysis of the siRNA-mediated gene silencing process targeting three homologous genes controlling soybean seed oil quality. PLoS One. 10(6). Available: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0129010.

Detection of novel QTLs for foxglove aphid resistance in soybean Reprint Icon - (Peer Reviewed Journal)
Lee, J., Yoo, M., Jung, J., Bilyeu, K.D., Lee, J., Kang, S. 2015. Detection of novel QTLs for foxglove aphid resistance in soybean. Theoretical and Applied Genetics. 128(8):1481-1488.

Introgression of leginsulin, a cysteine-rich protein, and high-protein trait from an Asian soybean plant introduction genotype into a North American experimental soybean line Reprint Icon - (Peer Reviewed Journal)
Krishnan, H.B., Kim, W., Oehrle, N.W., Alaswad, A.A., Baxter, I.R., Wiebold, W.J., Nelson, R.L. 2015. Introgression of leginsulin, a cysteine-rich protein, and high-protein trait from an Asian soybean plant introduction genotype into a North American experimental soybean line. Journal of Agricultural and Food Chemistry. 63:2862-2869.

Identification of a new soybean Kunitz trypsin inhibitor mutation and its effect on Bowman-Birk protease inhibitor content in soybean seed Reprint Icon - (Peer Reviewed Journal)
Gillman, J.D., Kim, W., Krishnan, H.B. 2015. Identification of a new soybean Kunitz trypsin inhibitor mutation and its effect on Bowman-Birk protease inhibitor content in soybean seed. Journal of Agricultural and Food Chemistry. 63:1352-1359.

An effective and simple procedure to isolate abundant quantities of biologically active chemopreventive lunasin-protease inhibitor concentrate (LPIC) from soybean Reprint Icon - (Peer Reviewed Journal)
Krishnan, H.B., Wang, T.T. 2015. An effective and simple procedure to isolate abundant quantities of biologically active chemopreventive lunasin-protease inhibitor concentrate (LPIC) from soybean. Food Chemistry. 177:120-126.

Phytic acid and inorganic phosphate composition in soybean lines with independent IPK1 mutations Reprint Icon - (Peer Reviewed Journal)
Vincent, J.A., Stacey, M., Stacey, G., Bilyeu, K.D. 2015. Phytic acid and inorganic phosphate composition in soybean lines with independent IPK1 mutations. The Plant Genome. 8(1). Available https://dl.sciencesocieties.org/publications/tpg/pdfs/8/1/plantgenome2014.10.0077.

Establishing a leaf proteome reference map for Ginkgo biloba provides insight into potential ethnobotanical uses Reprint Icon - (Peer Reviewed Journal)
Uvackova, L., Ondruskova, E., Danchenko, M., Skultety, L., Miernyk, J.A., Hrubik, P., Hajduch, M. 2014. Establishing a leaf proteome reference map for Ginkgo biloba provides insight into potential ethnobotanical uses. Journal of Agricultural and Food Chemistry. 62:11547-11556.

Effects of proteome rebalancing and sulfur nutrition on the accumulation of methionine rich d-zein in transgenic soybeans Reprint Icon - (Peer Reviewed Journal)
Kim, W., Jez, J., Krishnan, H.B. 2014. Effects of proteome rebalancing and sulfur nutrition on the accumulation of methionine rich d-zein in transgenic soybeans. Frontiers in Plant Science. 5:633.

Convergent signaling pathways – interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation Reprint Icon - (Review Article)
Rao, S.R., Moller, I., Thelen, J.J., Miernyk, J.A. 2014. Convergent signaling pathways – interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation. Cell Stress and Chaperones. 20:15-21.

Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules Reprint Icon - (Peer Reviewed Journal)
Gillman, J.D., Stacey, M.G., Cui, Y., Berg, H., Stacey, G. 2014. Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules. Biomed Central (BMC) Plant Biology. 14:143. DOI:10.1186/1471-2229-14-143.

Is lys-Ne-acetylation the next big thing in post-translational modifications? Reprint Icon - (Review Article)
Rao, R., Thelen, J.J., Miernyk, J.A. 2014. Is lys-Ne-acetylation the next big thing in post-translational modifications?. Trends in Plant Science. 19(9):550-553.

Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory NolR Reprint Icon - (Peer Reviewed Journal)
Lee, S., Krishnan, H.B., Jez, J.M. 2014. Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory NolR. Proceedings of the National Academy of Sciences. 111(17):6509-6514.

A bioinformatics-based overview of protein Lys-Ne-acetylation Reprint Icon - (Peer Reviewed Journal)
Rao, S.R., Thelen, J.J., Miernyk, J.A. 2014. A bioinformatics-based overview of protein Lys-Ne-acetylation. Frontiers in Plant Science. 5:1-11.

Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes Reprint Icon - (Peer Reviewed Journal)
Langewisch, T.L., Zhang, H., Vincent, R., Joshi, T., Xu, D., Bilyeu, K.D. 2014. Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes. PLoS One. 9(4):e94150. DOI:10.1371/journal.pone.0094150.

Structure and mechanism of soybean ATP sulfurylase and the committed step in plant sulfur assimilation Reprint Icon - (Peer Reviewed Journal)
Hermann, J., Ravilious, G.E., Mckinney, S.E., Westfall, C.S., Lee, S., Baraniecka, P., Giovannetti, M., Stanislav, K., Krishnan, H.B., Joseph, J.M. 2014. Structure and mechanism of soybean ATP sulfurylase and the committed step in plant sulfur assimilation. Journal of Biological Chemistry. 289(15):10919-10929.

Identification of the molecular genetic basis of the low palmitic acid seed oil trait in soybean mutant line RG3 and association analysis of molecular markers with elevated seed stearic acid and reduced seed palmitic acid Reprint Icon - (Peer Reviewed Journal)
Gillman, J.D., Tetlow, A., Hagely, K., Boersma, J.G., Cardinal, A., Rajcan, I., Bilyeu, K.D. 2014. Identification of the molecular genetic basis of the low palmitic acid seed oil trait in soybean mutant line RG3 and association analysis of molecular markers with elevated seed stearic acid and reduced seed palmitic acid. Molecular Breeding. 34:447-455.

Characterization of the fan1 locus in soybean line A5 and development of molecular assays for high-throughput genotyping of FAD3 genes Reprint Icon - (Peer Reviewed Journal)
Pham, A., Bilyeu, K.D., Chen, P., Boerma, R.H., Li, Z. 2013. Characterization of the fan1 locus in soybean line A5 and development of molecular assays for high-throughput genotyping of FAD3 genes. Molecular Breeding. 33:895-907.

Structure of soybean serine acetyltransferase and formation of the cysteine regulatory complex as a molecular chaperone Reprint Icon - (Peer Reviewed Journal)
Yi, H., Dey, S., Kumaran, S., Lee, S., Krishnan, H.B., Jez, J.M. 2013. Structure of soybean serine acetyltransferase and formation of the cysteine regulatory complex as a molecular chaperone. Journal of Biological Chemistry. 288(51):36463-36472.

Non-destructive determination of high oleic acid content in single soybean seeds by near infrared reflectance spectroscopy Reprint Icon - (Peer Reviewed Journal)
Han, S., Chae, J., Bilyeu, K.D., Shannon, G.J., Lee, J. 2013. Non-destructive determination of high oleic acid content in single soybean seeds by near infrared reflectance spectroscopy. Journal of the American Oil Chemists' Society. 91:229-234.

A functional genomic analysis of Arabidopsis thaliana PP2C clade D Reprint Icon - (Peer Reviewed Journal)
Tovar-Mendez, A., Miernyk, J.A., Hoyos, M.E., Randall, D.D. 2013. A functional genomic analysis of Arabidopsis thaliana PP2C clade D. Protoplasma. 251:265-271.

Last Modified: 2/23/2016
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