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United States Department of Agriculture

Agricultural Research Service

Related Topics

Research Project: Characterization, Management, and Utilization of Soybean Genetic Resources

Location: Soybean/maize Germplasm, Pathology, and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Investigating the control of chlorophyll degradation by genomic correlation mining - (Peer Reviewed Journal)
Ghandchi, F.P., Caetano-Anolles, G., Clough, S.J., Ort, D.R. 2016. Investigating the control of chlorophyll degradation by genomic correlation mining. PLoS One. 11(9):eo162327.

The role of invertases in plant compensatory responses to simulated herbivory - (Peer Reviewed Journal)
Siddappaji, M.H., Krishnankutty, S.M., Calla Zalles, B., Clough, S.J., Paige, K.N. 2015. The role of invertases in plant compensatory responses to simulated herbivory. Biomed Central (BMC) Plant Biology. 15:278.

If photoinhibition of soybean photosystem II enhances the hypersensitive response, it is not solely due to blockage of electron transfer flow at D1 - (Peer Reviewed Journal)
Zhu, J., Neece, D.J., Calla Zalles, B., Clough, S.J. 2015. If photoinhibition of soybean photosystem II enhances the hypersensitive response, it is not solely due to blockage of electron transfer flow at D1. Journal of Plant Biochemistry & Physiology. 3:156. doi:10.4172/2329-9029.1000156.

Similarities and differences in global gene expression profiles between herbicide- and pathogen-induced PSII inhibition - (Peer Reviewed Journal)
Zhu, J., Li, M., Clough, S.J. 2015. Similarities and differences in global gene expression profiles between herbicide- and pathogen-induced PSII inhibition. Journal of Plant Biochemistry & Physiology. 3:157. doi:10.4172/2329-9029.1000157.

Identification and fine mapping of a soybean seed protein QTL from PI 407788A on Chromosome 15 - (Peer Reviewed Journal)
Kim, M., Schultz, S., Nelson, R.L., Diers, B. 2015. Identification and fine mapping of a soybean seed protein QTL from PI 407788A on Chromosome 15. Crop Science. 56:219-225.

Heritability and correlations among agronomic traits associated with reduced stink-bug damage in an F2:3 soybean population - (Peer Reviewed Journal)

Genetic architecture of cyst nematode resistance revealed by genome-wide association study in soybean - (Peer Reviewed Journal)
Vuong, T.D., Sonah, H., Meinhardt, C.G., Deshmukh, R., Kadam, S., Nelson, R.L., Shannon, J.G., Nguyen, H.T. 2015. Genetic architecture of cyst nematode resistance revealed by genome-wide association study in soybean. Biomed Central (BMC) Genomics. 16:593.

GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean - (Peer Reviewed Journal)
Sun, L., Miao, Z., Cai, C., Zhang, D., Zhao, M., Wu, Y., Zhang, X., Swarm, S.A., Zhou, L., Zhang, Z.J., Nelson, R.L., Ma, J. 2015. GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean. Nature Genetics. 47:939-943.

Intersubgeneric hybridization between Glycine max and G. tomentella: Production of F1, amphidiploid, BC1, BC2 BC3 and fertile soybean plants Reprint Icon - (Peer Reviewed Journal)
Singh, R.J., Nelson, R.L. 2015. Intersubgeneric hybridization between Glycine max and G. tomentella: Production of F1, amphidiploid, BC1, BC2 BC3 and fertile soybean plants. Theoretical and Applied Genetics. 128:1117-1136. doi: 10.1007/s00122-015-2494-0.

Confirmation of a seed yield QTL in soybean - (Peer Reviewed Journal)
Fox, C.M., Cary, T.R., Nelson, R.L., Diers, B.W. 2015. Confirmation of a seed yield QTL in soybean. Crop Science. 55:992-998.

The genetic architecture of seed composition in soybean is refined by genome-wide association scans across multiple populations Reprint Icon - (Peer Reviewed Journal)
Vaughn, J.N., Nelson, R.L., Song, Q., Cregan, P.B., Boerma, R., Li, Z. 2014. The genetic architecture of seed composition in soybean is refined by genome-wide association scans across multiple populations. Genes, Genomes, and Genomics. 4:2283-2294. doi: 10.1534/g3.114.013433.

Effects of selective genetic introgression from wild soybean to soybean Reprint Icon - (Peer Reviewed Journal)
Akpertey, A., Belaffif, M., Graef, G., Mian, R.M., Shannon, J.G., Cregan, P.B., Hudson, M.E., Diers, B.W., Nelson, R.L. 2015. Effects of selective genetic introgression from wild soybean to soybean. Crop Science. 54:2683-2695. doi:10.2135/cropsci2014.03.0189.

Dt2 is a gain-of-function MADS-Domain factor gene that controls semi-determinacy in soybean Reprint Icon - (Peer Reviewed Journal)
Ping, J., Liu, Y., Sun, L., Zhao, M., Li, Y., She, M., Sui, Y., Lin, F., Liu, X., Tang, Z., Nguyen, H., Tian, Z., Qiu, L., Nelson, R.L., Clemente, T.C., Specht, J.E., Ma, J. 2014. Dt2 is a gain-of-function MADS-Domain factor gene that controls semi-determinacy in soybean. The Plant Cell. DOI/10.1105/tpc.114.126938.

Methodology for creating alloplasmic soybean lines by using Glycine tomentella as a maternal parent - (Peer Reviewed Journal)
Singh, R.J., Nelson, R.L. 2014. Methodology for creating alloplasmic soybean lines by using Glycine tomentella as a maternal parent. Plant Breeding. DOI:10.1111/pbr.12196.

Genetic improvement of U.S. soybean in Maturity Groups II, III, and IV Reprint Icon - (Peer Reviewed Journal)
Rincker, K., Nelson, R.L., Specht, J., Sleper, D., Cary, T., Cianzio, S., Casteel, S., Conley, S., Chen, P., Davis, V., Fox, C., Graef, G., Godsey, C., Holshouser, D., Jiang, G., Kantartzi, S., Kenworthy, W ., Lee, C., Mian, R.M., McHale, L., Naeve, S., Orf, J., Poysa, V., Schapaugh, W., Shannon, G., Uniatowski, R., Wang, D., Diers, B. 2015. Genetic improvement of U.S. soybean in Maturity Groups II, III, and IV. Crop Science. 54:1419-1432. doi: 10.2135/cropsci2013.10.0665.

Transcriptome analyses suggest a disturbance of iron homeostasis in soybean leaves during white mould disease establishment Reprint Icon - (Peer Reviewed Journal)
Calla Zalles, B., Blahut-Beatty, L., Koziol, L., Simmonds, D.H., Clough, S.J. 2014. Transcriptome analyses suggest a disturbance of iron homeostasis in soybean leaves during white mould disease establishment. Molecular Plant Pathology. 15(6):576-588. DOI:10.1111/mpp.12113.

Genomic evaluation of oxalate-degrading transgenic soybean in response to Sclerotinia sclerotiorum infection Reprint Icon - (Peer Reviewed Journal)
Calla Zalles, B., Blahut-Beatty, L., Koziol, L., Zhang, Y., Neece, D.J., Carbajulca, D., Garcia, A., Simmonds, D.H., Clough, S.J. 2014. Genomic evaluation of oxalate-degrading transgenic soybean in response to Sclerotinia sclerotiorum infection. Molecular Plant Pathology. 15(6):563-575. DOI:10.1111/mpp.12115.

Functional and evolutionary characterization of the CONSTANS gene family in short-day photoperiodic flowering in soybean Reprint Icon - (Peer Reviewed Journal)
Wu, F., Price, B.W., Haider, W., Seufferheld, G., Nelson, R.L., Hanzawa, Y. 2014. Functional and evolutionary characterization of the CONSTANS gene family in short-day photoperiodic flowering in soybean. PLoS One. DOI:10.1371/journal.pone.0085754.

Last Modified: 2/23/2016
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