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ARS Home » Pacific West Area » Corvallis, Oregon » National Clonal Germplasm Repository » Research » Research Project #423186

Research Project: Management of Temperate-Adapted Fruit, Nut, and Specialty Crop Genetic Resources and Associated Information

Location: National Clonal Germplasm Repository

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Development and validation of marker assays for high-throughput detection of Phytophthora crown rot resistance, FaRPc2, in the cultivated octoploid strawberry - (Peer Reviewed Journal)
Noh, Y., Mangandi, J., Verma, S., Zurn, J.D., Lu, Y., Fan, Z., Bassil, N.V., Peres, N., Whitaker, V.M., Lee, S. 2018. Development and validation of marker assays for high-throughput detection of Phytophthora crown rot resistance, FaRPc2, in the cultivated octoploid strawberry. Molecular Breeding. 38:104.

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome Reprint Icon - (Peer Reviewed Journal)
Vanburen, R., Man Wai, C., Colle, M., Wang, J., Sullivan, S., Bushakra, J., Liachko, I., Vining, K., Dossett, M., Finn, C.E., Jibran, R., Chagne, D., Childs, K., Edger, P., Mockler, T., Bassil, N.V. 2018. A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome. Gigascience. 7(8):giy094. https://doi.org/10.1093/gigascience/giy094.

Register of new fruit and nut cultivars list 49: blue honeysuckle Reprint Icon - (Review Article)
Hummer, K.E. 2018. Register of new fruit and nut cultivars list 49: blue honeysuckle. HortScience. 53(6):748. https://doi:10.21273/HORTSCI536register-18.

Genome-assisted breeding in the octoploid strawberry Reprint Icon - (Book / Chapter)
Verma, S., Osorio, L., Lee, S., Bassil, N.V., Whitaker, V. 2018. Genome-assisted breeding in the octoploid strawberry. In: Hytönen T., Graham J., Harrison R., editors. The Genomes of Rosaceous Berries and their Wild Relatives. Berlin, Germany: Springer, Cham. p. 161-184. https://doi.org/10.1007/978-3-319-76020-9_12.

Cranberry vulnerability statement - (Government Publication)
Hummer, K.E., Lewers, K.S., Bassil, N.V., Vorsa, N., Zalapa, J.E., Iorizzo, M., Williams, K.A., Tzanetakis, I. 2018. Cranberry vulnerability statement. Germplasm Resources Information Network (GRIN). https://www.ars-grin.gov/npgs/cgc_reports/cranberry_vulnerability_statement_2017.pdf.

Repository contributions to Rubus research - (Abstract Only)
Bushakra, J., Alice, L., Carter, K., Dossett, M., Liston, A., Meiers, R., Mulch, C., Peterson, M.E., Vining, K., Zurn, J.D., Finn, C.E., Bassil, N.V., Hummer, K.E. 2018. Repository contributions to Rubus research. North American Raspberry & Blackberry Association Meeting. North American Raspberry & Blackberry Association Meeting.

Species for medicinal and social use with an emphasis on Theobroma cacao L. (cacao), Nicotiana tabacum L. (tobacco), Actaea racemosa L. (black cohosh), and Humulus lupulus L. (hops) Reprint Icon - (Book / Chapter)
Mccoy, J., Young, J.H., Nifong, J.M., Hummer, K.E., De Noma, J.S., Avendano-Arrazate, C.H., Greene, S.L., Kantar, M.B. 2019. Species for medicinal and social use with an emphasis on Theobroma cacao L. (cacao), Nicotiana tabacum L. (tobacco), Actaea racemosa L. (black cohosh), and Humulus lupulus L. (hops). In: Greene S., Williams K., Khoury C., Kantar M., Marek L., editors. North American Crop Wild Relatives, Volume 2. Cham, Switzerland: Springer. p. 645-692. https://doi.org/10.1007/978-3-319-97121-6_19.

Dissection of the multigenic wheat stem rust resistance present in the Montenegrin spring wheat accession PI 362698 Reprint Icon - (Peer Reviewed Journal)
Zurn, J.D., Rouse, M.N., Chao, S., Aoun, M., Macharia, G., Hiebert, C.W., Pretorius, Z.A., Bonman, J.M., Acevedo, M. 2018. Dissection of the multigenic wheat stem rust resistance present in the Montenegrin spring wheat accession PI 362698. BMC Genomics. 19:67. https://doi.org/10.1186/s12864-018-4438-y.

Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data Reprint Icon - (Peer Reviewed Journal)
Jibran, R., Dzierzon, H., Bassil, N.V., Bushakra, J., Edger, P.P., Sullivan, S., Finn, C.E., Dossett, M., Vining, K.J., Vanburen, R., Mockler, T.C., Liachko, I., Davies, K.M., Foster, T.M., Chagne, D. 2017. Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data. Horticulture Research. 5:8. https://doi.org/10.1038/s41438-017-0013-y.

Assessing genetic diversity of wild southeastern North American Vaccinium species using microsatellite markers Reprint Icon - (Peer Reviewed Journal)
Bassil, N.V., Bidani, A., Hummer, K.E., Rowland, L.J., Olmstead, J., Richards, C.M., Lyrene, P. 2017. Assessing genetic diversity of wild southeastern North American Vaccinium species using microsatellite markers. Genetic Resources and Crop Evolution. 65(3):939-950. https://doi.org/10.1007/s10722-017-0585-2.

Mapping a new black spot resistance locus in rose [abstract] - (Abstract Only)
Zurn, J.D., Zlesak, D.C., Bradeen, J., Hokanson, S.C., Bassil, N.V. 2018. Mapping a new black spot resistance locus in rose [abstract]. Plant and Animal Genome Conference. January 13-17, 2018, San Diego, California.

Perpetual flowering in strawberry species Reprint Icon - (Peer Reviewed Journal)
Cai, W., Zurn, J.D., Bassil, N.V., Hummer, K.E. 2017. Perpetual flowering in strawberry species. HortScience. 52(11):1496-1500. https://doi.org/10.21273/HORTSCI12025-17.

An improved 10-SSR pyrus fingerprinting DNA test to confirm parentage [abstract] - (Abstract Only)
Zurn, J.D., Nyberg, A.M., Bell, R.L., Postman, J.D., Bassil, N.V. 2017. An improved 10-SSR pyrus fingerprinting DNA test to confirm parentage [abstract]. HortScience. September 19-22, 2017, Waikoloa, Hawaii.

Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Fragaria ×ananassa) breeding populations using pedigree-based QTL analysis Reprint Icon - (Peer Reviewed Journal)
Verma, S., Zurn, J.D., Salinas, N., Mathey, M., Denoyes, B., Hancock, J., Finn, C.E., Bassil, N.V., Whitaker, V.M. 2017. Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Fragaria ×ananassa) breeding populations using pedigree-based QTL analysis. Horticulture Research. 4:17062. https://doi.org/10.1038/hortres.2017.62.

Genotyping-by-sequencing in three octoploid cultivated strawberry families - (Peer Reviewed Journal)
Vining, K.J., Salinas, N., Tennessen, J.A., Zurn, J.D., Van De Weg, E., Sargent, D.J., Handcock, J., Bassil, N.V. 2017. Genotyping-by-sequencing in three octoploid cultivated strawberry families. PeerJ. 5:e3731 https://doi.org/10.7717/peerj.3731.

International regulations regarding exchange of Rubus plant material. In: Martin, R.R., Ellis, M.A., Williamson, B., Williams, R.N, editors - (Book / Chapter)
Hummer, K.E. 2017. International regulations regarding exchange of Rubus plant material. In: Martin, R.R., Ellis, M.A., Williamson, B., Williams, R.N, editors. Compendium of Blackberry and Raspberry Diseases and Insects. St. Paul, MN: American Phytopathological Society. p. 146-147.

Increased phylogenetic resolution using target enrichment in Rubus - (Abstract Only)
Carter, K., Alice, L., Bryant, D., Bushakra, J., Liston, A., Mockler, T., Bassil, N.V., Hummer, K.E. 2017. Increased phylogenetic resolution using target enrichment in Rubus. HortScience. Available: https://ashs.confex.com/ashs/2017/meetingapp.cgi/Paper/26717.

Identifying haplotypes for flowering and QTLs for fruit quality in the RosBREED Michigan and Oregon strawberry (Fragaria ×ananassa) breeding sets using pedigree-based analysis [abstract] - (Abstract Only)
Verma, S., Zurn, J.D., Salinas, N., Matheymegan, Van De Weg, E., Denoyes, B., Hancock, J., Finn, C.E., Bassil, N.V., Whitaker, V.M. 2017. Identifying haplotypes for flowering and QTLs for fruit quality in the RosBREED Michigan and Oregon strawberry (Fragaria ×ananassa) breeding sets using pedigree-based analysis [abstract]. American Society of Horticulture Science Meeting. September 19-22, 2017, Waikoloa, Hawaii.

Validation of molecular markers associated with perpetual flowering in octoploid Fragaria germplasm - (Peer Reviewed Journal)
Salinas, N.R., Zurn, J.D., Mathey, M., Mookerjee, S., Denoyes, B., Perrotte, J., Pottier, A., Finn, C.E., Hancock, J.F., Stewart, P., Bassil, N.V. 2017. Validation of molecular markers associated with perpetual flowering in octoploid Fragaria germplasm. Molecular Breeding. 37:70. doi: 10.1007/s11032-017-0672-2.

Fragaria cascadensis K.E. Hummer: first investigation of volatile organic compounds of fruit - (Peer Reviewed Journal)
Ulrich, D., Olbricht, K., Weisse, K., Hummer, K.E. 2017. Fragaria cascadensis K.E. Hummer: first investigation of volatile organic compounds of fruit. Acta Horticulturae. 1156:679-682. doi: 10.17660/ActaHortic.2017.1156.99.

Rose parental characterization and population development for the identification of novel rose black spot resistance genes [abstract] - (Abstract Only)
Zlesak, D.C., Bradeen, J., Kummeth, S., Bassil, N.V., Zurn, J.D., Hokanson, S.C. 2017. Rose parental characterization and population development for the identification of novel rose black spot resistance genes [abstract]. International Society for Horticultural Science Meeting. July 2-7, 2017, Angers, France.

Microsatellite Markers Assess Genetic Diversity of Wild Southeastern American Vaccinium - (Abstract Only)

An Economical DNA Test for Genetic Identity Confirmation in Blueberry - (Abstract Only)

Toward understanding genotype x environment interactions on flowering and fruiting in black raspberry (Rubus occidentalis L.) - (Peer Reviewed Journal)
Bushakra, J., Bradish, C., Weber, C., Scheerens, J.C., Robbins, L., Dossett, M., Peterson, M.E., Fernandez, G., Bassil, N.V., Finn, C.E. 2017. Toward understanding genotype x environment interactions on flowering and fruiting in black raspberry (Rubus occidentalis L.). Acta Horticulturae. 1117:25-30.

Perry: American renaissance of an ancient beverage Reprint Icon - (Peer Reviewed Journal)
Postman, J.D., Hummer, K.E. 2018. Perry: American renaissance of an ancient beverage. Acta Horticulturae. 1205:493-496. https://doi.org/10.17660/ActaHortic.2018.1205.60.

Wild Vietnamese relatives of blueberries Reprint Icon - (Peer Reviewed Journal)
Hummer, K.E., Oliphant, J.M., Hoai, T., Nguyen, K. 2017. Wild Vietnamese relatives of blueberries. Acta Horticulturae. 1180:415-422. https://doi.org/10.17660/ActaHortic.2017.1180.58.

North American crop wild relatives of temperate berries (Fragaria L., Ribes L., Rubus L., and Vaccinium L.) Reprint Icon - (Book / Chapter)
Hummer, K.E., Williams, K.A., Bushakra, J. 2019. North American crop wild relatives of temperate berries (Fragaria L., Ribes L., Rubus L., and Vaccinium L.). In: Greene S., Williams K., Khoury C., Kantar M., Marek L., editors. North American Crop Wild Relatives, Volume 2. Cham, Switzerland: Springer. p. 283-327. https://doi.org/10.1007/978-3-319-97121-6_9.

Plant Resources Center and the Vietnamese Genebank System Reprint Icon - (Peer Reviewed Journal)
Hoai, T.T., Hummer, K.E., Nghia, L.T. 2018. Plant Resources Center and the Vietnamese Genebank System. Acta Horticulturae. 1205:425-430. https://doi.org/10.17660/ActaHortic.2018.1205.50.

Microsatellite markers for genetic analyses in southeastern Vaccinium species Reprint Icon - (Peer Reviewed Journal)
Bidani, A., Hummer, K.E., Olmstead, J., Lyrene, P., Rowland, L.J., Bassil, N.V. 2017. Microsatellite markers for genetic analyses in southeastern Vaccinium species. Acta Horticulturae International Symposium on Vaccinium Culture. 1180:373-378. https://doi.org/10.17660/ActaHortic.2017.1180.51.

Development of an efficient DNA test for genetic identity confirmation in blueberry Reprint Icon - (Peer Reviewed Journal)
Bidani, A., Hummer, K.E., Rowland, L.J., Bassil, N.V. 2017. Development of an efficient DNA test for genetic identity confirmation in blueberry. Acta Horticulturae. 1180:363-368. https://doi.org/10.17660/ActaHortic.2017.1180.49.

Classification of Korean native pear based on a standard set of microsatellite loci - (Peer Reviewed Journal)
Oh, Y., Kim, S., Shin, H., Oh, S., Won, J., Oh, S., Han, Y., Kim, D., Kim, Y., Bassil, N.V. 2017. Classification of Korean native pear based on a standard set of microsatellite loci. Acta Horticulturae. 1172:237-240.

Blackberries: an introduction - (Book / Chapter)
Hummer, K.E. 2017. Blackberries: an introduction. In: Hall, H.K., Funk, R.C., editors. Blackberries and their Hybrids. Oxford, England, United Kingdom: CABI. p. 1-16.

Comparative diversity analysis of southeastern Rubus germplasm through molecular and pedigree techniques - (Peer Reviewed Journal)
Bradish, C.M., Overbaugh, E., Ballington, J., Fernandez, G.E., Bassil, N.V. 2016. Comparative diversity analysis of southeastern Rubus germplasm through molecular and pedigree techniques. Acta Horticulturae. 1127:157-162. doi: 10.17660/ActaHortic.2016.1127.25.

Genotyping and phenotyping heat tolerance in black raspberry (Rubus occidentalis L.) - (Peer Reviewed Journal)
Bradish, C.M., Fernandez, G.E., Dossett, M., Bushakra, J., Bassil, N.V., Finn, C.E. 2016. Genotyping and phenotyping heat tolerance in black raspberry (Rubus occidentalis L.). Acta Horticulturae. 1127:321-324. doi: 10.17660/ActaHortic.2016.1127.50.

A multiplexed microsatellite fingerprinting set for hazelnut cultivar identification - (Peer Reviewed Journal)
Akin, M., Nyberg, A.M., Postman, J.D., Mehlenbacher, S., Bassil, N.V. 2016. A multiplexed microsatellite fingerprinting set for hazelnut cultivar identification. European Journal of Horticultural Science. 81(6):327-338.

The development of a dense SNP-based consensus map and QTL detection for black spot resistance in five diploid rose populations [abstract] - (Abstract Only)
Yan, M., Byrne, D., Zurn, J.D., Dong, Q., Klein, P. 2017. The development of a dense SNP-based consensus map and QTL detection for black spot resistance in five diploid rose populations [abstract]. Plant and Animal Genome Conference. January 13-18, 2017, San Diego, California.

Development and evaluation of the Axiom® IStraw35 384HT array for the allo-octoploid cultivated strawberry Fragaria ×ananassa - (Peer Reviewed Journal)
Verma, S., Bassil, N.V., van de Weg, E., Harrison, R., Monfort, A., Amaya, I., Denoyes, B., Mahoney, L., Davis, T., Fan, Z., Knapp, S., Whitaker, V. 2017. Development and evaluation of the Axiom® IStraw35 384HT array for the allo-octoploid cultivated strawberry Fragaria ×ananassa. Acta Horticulturae. 1156:75-82. doi: 10.17660/ActaHortic.2017.1156.10.

Agapetes: Jewels of the Himalayas Reprint Icon - (Peer Reviewed Journal)
Hummer, K.E., Oliphant, J.M., Hoai, T., Nguyen, K. 2017. Agapetes: Jewels of the Himalayas. Acta Horticulturae. 1185:29-34. https://doi.org/10.17660/ActaHortic.2017.1185.6.

DNA tests for strawberry: ¿-decalactone "fruity" aroma - qFaFAD1 - (Other)
Zurn, J.D., Piaskowski, J., Amaya, I., Peace, C., Bassil, N.V. 2016. DNA tests for strawberry: ¿-decalactone "fruity" aroma - qFaFAD1. Extension Publications. https://www.rosbreed.org/breeding/strawberry, 1:1-2.

DNA tests for strawberry: mesifurane "sherry" aroma - FaOMT-SI/NO - (Other)
Zurn, J.D., Piaskowski, J.L., Amaya, I., Peace, C., Bassil, N.V. 2016. DNA tests for strawberry: mesifurane "sherry" aroma - FaOMT-SI/NO. Extension Publications. https://www.rosbreed.org/breeding/strawberry; 1:1-2.

DNA tests for strawberry: perpetual flowering - Bx215 - (Other)
Zurn, J.D., Salinas, N.R., Piaskowski, J.L., Denoyes, B., Peace, C., Bassil, N.V. 2016. DNA tests for strawberry: perpetual flowering - Bx215. Extension Publications. https://www.rosbreed.org/breeding/strawberry; 1:1-2.

Genomics tools available for unravelling mechanisms underlying agronomical traits in strawberry with more to come - (Peer Reviewed Journal)
Denoyes, B., Amaya, I., Liston, A., Tennessen, J., Ashman, T., Whitaker, V., Hytönen, T., van de Weg, E., Osorio, S., Folta, K., Slovin, J.P., Harrison, R., Monfort, A., Bassil, N.V. 2017. Genomics tools available for unravelling mechanisms underlying agronomical traits in strawberry with more to come. Acta Horticulturae. 1156:13-24. doi: 10.17660/ActaHortic.2017.1156.3.

Molecular characterization of aphid resistance in black raspberry germplasm - (Abstract Only)
Bushakra, J., Armes, K.A., Vining, K.J., Dossett, M., Lee, J.C., Bradish, C., Fernandez, G., Lee, J., Finn, C.E., Bassil, N.V. 2016. Molecular characterization of aphid resistance in black raspberry germplasm. Acta Horticulture Proceedings. American Society for Horticultural Science (ASHS), Atlanta, GA, August 2016.

Seeking the northern boundary of the Cascade strawberry - (Peer Reviewed Journal)
Hummer, K.E., Davis, T. 2017. Seeking the northern boundary of the Cascade strawberry. Acta Horticulturae. 1156:111-116. doi: 10.17660/ActaHortic.2017.1156.15.

Small genomes in tetraploid Rubus L. (Rosaceae) from New Zealand and southern South America - (Peer Reviewed Journal)
Hummer, K.E., Bassil, N.V., Alice, L. 2017. Small genomes in tetraploid Rubus L. (Rosaceae) from New Zealand and southern South America. Journal of American Pomological Society. 7(1):2-7.

Lessons learned from DNA-based tool development and use in a genebank - (Peer Reviewed Journal)
Bassil, N.V., Hummer, K.E., Finn, C.E. 2017. Lessons learned from DNA-based tool development and use in a genebank. Acta Horticulturae. 1156:25-36. doi: 10.17660/ActaHortic.2017.1156.4.

The genome of black raspberry (Rubus occidentalis) - (Peer Reviewed Journal)
Vanburen, R., Bryant, D., Bushakra, J., Vining, K.J., Edger, P.P., Rowley, E.R., Priest, H.D., Michael, T.P., Lyons, E., Filichkin, S., Dossett, M., Finn, C.E., Bassil, N.V., Mockler, T.C. 2016. The genome of black raspberry (Rubus occidentalis). Plant Journal. 87(6):535-547. doi: 10.1111/tpj.13215.

Evaluations of sustained vigor and winter hardiness of black raspberry (Rubus occidentalis) grown in the Southeastern U.S - (Peer Reviewed Journal)
Bradish, C.M., Fernandez, G., Bushakra, J., Bassil, N.V., Finn, C.E., Dossett, M. 2016. Evaluations of sustained vigor and winter hardiness of black raspberry (Rubus occidentalis) grown in the Southeastern U.S. Acta Horticulturae. 1133:129-134.

Black raspberry fruit composition over two years from seedling populations grown at four U.S. geographic locations - (Peer Reviewed Journal)
Perkins-Veazie, P., Ma, G., Fernandez, G., Bradish, C.M., Bushakra, J., Bassil, N.V., Weber, C.A., Scheerens, J.C. 2016. Black raspberry fruit composition over two years from seedling populations grown at four U.S. geographic locations. Acta Horticulturae. 1133:335-338.

Where are we now as we merge genomics into plant breeding and what are our limitations? Experiences from RosBREED - (Proceedings)
Iezzoni, A., Peace, C., Bassil, N.V., Coe, M., Fazio, G., Gallardo, K., Gasic, K., Luby, J., Mcferson, J., Van De Weg, E.W., Weebadde, C. 2016. Where are we now as we merge genomics into plant breeding and what are our limitations? Experiences from RosBREED. Acta Horticulturae. 1117:1-6. doi: 10.17660/ActaHortic.2016.1117.1.

The genome of black raspberry (Rubus occidentalis) - (Peer Reviewed Journal)
Vanburen, R., Bryant, D.W., Bushakra, J., Vining, K.J., Edger, P.P., Rowley, E.R., Priest, H.D., Michael, T.P., Lyons, E., Filichkin, S.A., Dossett, M., Finn, C.E., Bassil, N.V., Mockler, T.C. 2016. The genome of black raspberry (Rubus occidentalis). Plant Journal. 87(6):535-547. doi: 10.1111/tpj.13215.

Flowering tendencies in strawberry species in the USDA collection - (Peer Reviewed Journal)
Hummer, K.E., Oliphant, J.M., Bassil, N.V. 2016. Flowering tendencies in strawberry species in the USDA collection. International Journal of Fruit Science. doi: 10.1080/15538362.2016.1195309.

A high density linkage map of the ancestral diploid strawberry F. iinumae using SNP markers from the ISTRAW90 array and GBS - (Peer Reviewed Journal)
Mahoney, L., Sargent, D., Wood, D., Ward, J., Bassil, N.V., Handcock, J., Folta, K., Davis, T. 2016. A high density linkage map of the ancestral diploid strawberry F. iinumae using SNP markers from the ISTRAW90 array and GBS. The Plant Genome. 9(2). doi: 10.3835/plantgenome2015.08.0071.

Determining optimum in vitro mineral nutrition for diverse pear germplasm using response surface methodology - (Peer Reviewed Journal)
Reed, B.M., Wada, S., De Noma, J.S., Niedz, R.P. 2016. Determining optimum in vitro mineral nutrition for diverse pear germplasm using response surface methodology. In Vitro Cellular and Developmental Biology - Plants. Acta Hort. (ISHS) 1113:79-84 doi: 10.17660/ActaHortic.2016.1113.11.

FaRXf1: a locus conferring resistance to angular leaf spot caused by Xanthomonas fragariae in octoploid strawberry - (Peer Reviewed Journal)
Roach, J., Verma, S., Peres, N., Jamieson, A., Van De Weg, E., Bink, M.C., Bassil, N.V., Lee, S., Whitaker, V. 2016. FaRXf1: a locus conferring resistance to angular leaf spot caused by Xanthomonas fragariae in octoploid strawberry. Theoretical and Applied Genetics. 129(6):1191-1201. doi: 10.1007/s00122-016-2695-1.

Germplasm Conservation and Access to Genetic Resources: National Plant Germplasm System and the National Clonal Germplasm Repository - (Proceedings)
Hummer, K.E. 2016. Germplasm Conservation and Access to Genetic Resources: National Plant Germplasm System and the National Clonal Germplasm Repository. Symposium Proceedings. Organic Seed Alliance,Port Townsend, WA, pp. 126-130.

Optimizing shoot culture media for Rubus germplasm: the effects of NH4+, NO3-, and total nitrogen - (Peer Reviewed Journal)
Poothong, S., Reed, B.M. 2016. Optimizing shoot culture media for Rubus germplasm: the effects of NH4+, NO3-, and total nitrogen. In Vitro Cellular and Developmental Biology - Plants. 52(3):265-275. doi: 10.1007/s11627-016-9750-0.

Screening genetically diverse pear species for in vitro CaCl2, MgSO4 and KH2PO4 requirements Reprint Icon - (Peer Reviewed Journal)
Wada, S., Maki, S., Niedz, R.P., Reed, B.M. 2015. Screening genetically diverse pear species for in vitro CaCl2, MgSO4 and KH2PO4 requirements. Acta Physiologiae Plantarum. 37, 63 DOI 10.1007/s11738-014-1754-y.

Proceedings of the XI international Rubus and Ribes symposium - (Book / Chapter)
Fernandez, G.E., Hummer, K.E., editors. 2016. Proceedings of the XI international Rubus and Ribes symposium. Acta Horticulturae. 526 p.

Determining optimum in vitro mineral nutrition for diverse pear germplasm using response surface methodology - (Peer Reviewed Journal)
Reed, B.M., De Noma, J.S., Wada, S., Niedz, R.P. 2016. Determining optimum in vitro mineral nutrition for diverse pear germplasm using response surface methodology. Acta Horticulturae. 1113:79-84.

Comparison of accessions from the UK and US national pear germplasm collections with a standardized set of microsatellite markers Reprint Icon - (Peer Reviewed Journal)
Evans, K., Fernandez-Fernandez, F., Bassil, N.V., Nyberg, A.M., Postman, J.D. 2015. Comparison of accessions from the UK and US national pear germplasm collections with a standardized set of microsatellite markers. Acta Horticulturae. 1094:41-46.

Increased CaCl2, MgS04 and KH2P04 improve the growth of micropropagated red raspberries - (Peer Reviewed Journal)
Poothong, S., Reed, B.M. 2015. Increased CaCl2, MgS04 and KH2P04 improve the growth of micropropagated red raspberries. In Vitro Cellular and Developmental Biology - Plants. 51:648–658. doi: 10.1007/s11627-015-9720-y.

Rubus ploidy assessment - (Peer Reviewed Journal)
Hummer, K.E., Bassil, N.V., Alice, L. 2016. Rubus ploidy assessment. Acta Horticulturae. 1133:81-88. doi: 10.17660/ActaHortic.2016.1133.13.

Comparative RNA-seq for the investigation of tolerance to Verticillium wilt in black raspberry - (Peer Reviewed Journal)
Bushakra, J., Bassil, N.V., Weiland, G.E., Finn, C.E., Vining, K., Filichkin, S., Dossett, M., Bryant, D., Mockler, T. 2016. Comparative RNA-seq for the investigation of tolerance to Verticillium wilt in black raspberry. Acta Horticulture Proceedings. 1133:103-114. doi: 10.17660/ActaHortic.2016.1133.16.

Development of a multiplexed fingerprinting set in blackberry - (Peer Reviewed Journal)
Bassil, N.V., Nyberg, A.M., Finn, C.E., Clark, J.R., Peace, C., Iezzoni, A. 2016. Development of a multiplexed fingerprinting set in blackberry. Acta Horticulturae. 1133:89-96. doi: 10.17660/ActaHortic.2016.1133.14.

Relationship between humanity and plant natural resources – in the context of food and agriculture - (Proceedings)
Hummer, K.E., Volk, G.M., Preece, J.E. 2016. Relationship between humanity and plant natural resources – in the context of food and agriculture. Foreign Agriculture Organization Proceedings. Humanity and Plant Genetic Resources: Fruits through the Ages. p. 274-308.

A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag4 conferring resistance to the aphid Amphorophora agathonica Reprint Icon - (Peer Reviewed Journal)
Bushakra, J., Bryant, D.W., Dossett, M., Vining, K.J., Vanburen, R., Gilmore, B.S., Lee, J., Mockler, T.C., Finn, C.E., Bassil, N.V. 2015. A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag4 conferring resistance to the aphid Amphorophora agathonica. Theoretical and Applied Genetics. 128:1631-1646.

Ploidy of USDA (United States Department of Agriculture) world pear germplasm collection determined by flow cytometry Reprint Icon - (Peer Reviewed Journal)
Postman, J.D., Bassil, N.V., Bell, R.L. 2015. Ploidy of USDA (United States Department of Agriculture) world pear germplasm collection determined by flow cytometry. Acta Horticulturae. 1094:75-81.

Improved microsatellite markers for quince (Cydonia oblonga) genetic analysis - (Peer Reviewed Journal)
Bassil, N.V., Nyberg, A.M., Kim, Y., Postman, J.D. 2015. Improved microsatellite markers for quince (Cydonia oblonga) genetic analysis. Acta Horticulturae. 1094:57-65.

Practical aspects of running DOE for improving growth media for in vitro plants - (Abstract Only)
Reed, B.M., De Noma, J.S. 2015. Practical aspects of running DOE for improving growth media for in vitro plants. Society for In Vitro Biology Proceedings. Vol 51: S21-22.

Developing improved micropropagation medium for hazelnuts (Corylus avellana L.) based on ion concentrations - (Abstract Only)
Akin, M., Niedz, R.P., Reed, B.M. 2015. Developing improved micropropagation medium for hazelnuts (Corylus avellana L.) based on ion concentrations. In Vitro Biology Meeting. Vol 51: S60-61.

Developing black raspberry genetic and genomic resources - (Abstract Only)
Bushakra, J., Bryant, D., Dossett, M., Vining, K., Vanburen, R., Gilmore, B.S., Filichkin, S., Weiland, G.E., Peterson, M.E., Bradish, C.M., Fernandez, G., Lewers, K.S., Graham, J., Lee, J., Mockler, T., Bassil, N.V., Finn, C.E. 2015. Developing black raspberry genetic and genomic resources [abstract]. International Rubus and Ribes Symposium.

Development and transferability of black and red raspberry microsatellite markers from short-read sequences - (Peer Reviewed Journal)
Dossett, M., Bushakra, J., Gilmore, B.S., Koch, C., Kemplar, C., Finn, C.E., Bassil, N.V. 2015. Development and transferability of black and red raspberry microsatellite markers from short-read sequences. Journal of the American Society for Horticultural Science. 140(3):243–252.

The Discovery and Naming of the Cascade strawberry (Fragaria cascadensis) Reprint Icon - (Popular Publication)
Hummer, K.E. 2015. The Discovery and Naming of the Cascade strawberry (Fragaria cascadensis). Kalmiopsis. 21:26-31.

An ultra-dense SNP linkage map for the octoploid, cultivated strawberry and its application in genetic research - (Abstract Only)

Determining nitrate and ammonium requirements for optimal in vitro response of diverse pear species - (Peer Reviewed Journal)
Wada, S., Niedz, R.P., Reed, B.M. 2015. Determining nitrate and ammonium requirements for optimal in vitro response of diverse pear species. In Vitro Cellular and Developmental Biology - Plants. 51(1):19-27.

Vavilovian centers of diversity: implications and impacts Reprint Icon - (Peer Reviewed Journal)
Hummer, K.E., Hancock, J. 2015. Vavilovian centers of diversity: implications and impacts. HortScience. 50(6):780-783.

In the footsteps of Vavilov: plant diversity then and now Reprint Icon - (Peer Reviewed Journal)
Hummer, K.E. 2015. In the footsteps of Vavilov: plant diversity then and now. HortScience. 50(6):784-788.

Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.) - (Peer Reviewed Journal)
Bushakra, J., Bradish, C., Weber, C.A., Dossett, M., Fernandez, G., Weiland, G.E., Peterson, M.E., Scheerens, J.C., Robbins, L., Serce, S., Finn, C.E., Bassil, N.V. 2016. Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.). Acta Horticulturae. 1117:25-30. doi: 10.17660/ActaHortic.2016.1117.5.

Development and preliminary evaluation of a 90K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria ×ananassa - (Peer Reviewed Journal)
Bassil, N.V., Davis, T., Zhang, H., Ficklin, S., Mittman, M., Webster, T.A., Mahoney, L.L., Wood, D.J., Alperin, E.S., Rosyara, U., Koehorst-Van Putten, H., Monfort, A., Amaya, I., Denoyes, B., Sargent, D.J., Bianco, L., Van Dijk, T., Pirani, A., Iezzoni, A., Main, D., Peace, C., Yang, Y., Whitaker, V., Verma, S., Bellon, L., Brew, F., Herrera, R., Van De Weg, E.W. 2015. Development and preliminary evaluation of a 90K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria ×ananassa. Biomed Central (BMC) Genomics. 16:155.

Status of global strategies for horticultural fruit crops Reprint Icon - (Peer Reviewed Journal)
Hummer, K.E., Dempewolf, H., Bramel, P., Markham, R., Stover, E.W. 2015. Status of global strategies for horticultural fruit crops. Acta Horticulturae. 1101:147-152. doi: 10.17660/ActaHortic.2015.1101.22.

Conservation of citrus germplasm - an international survey - (Abstract Only)
Roos, M., Gmitter, F., Lee, R.F., Hummer, K.E. 2015. Conservation of citrus germplasm - an international survey. Acta Horticulturae. An International Survey. Acta Hort. 1101:33-38. doi 10.17660/ActaHortic.2015.1101.6.

Vaccinium species ploidy assessment - (Peer Reviewed Journal)
Hummer, K.E., Bassil, N.V., Rodriguez, A., Olmstead, J.W. 2016. Vaccinium species ploidy assessment. Acta Horticulturae. 1101:199-204. doi: 10.17660/ActaHortic.2015.1101.30.

Cryopreservation affects ROS-induced oxidative stress and antioxidant response in Arabidopsis seedlings - (Peer Reviewed Journal)
Chen, G., Ren, L., Zhang, J., Reed, B.M., Zhang, D., Shen, X. 2014. Cryopreservation affects ROS-induced oxidative stress and antioxidant response in Arabidopsis seedlings. Cryobiology. 70(1):38-47.

Modeling the effects of mineral nutrition for improving growth and development of micropropagated red raspberries - (Peer Reviewed Journal)
Poothong, S., Reed, B.M. 2013. Modeling the effects of mineral nutrition for improving growth and development of micropropagated red raspberries. Scientia Horticulturae. 165:132-141.

USDA Fragaria Crop Vulnerability Statement 2014 Reprint Icon - (Other)
Hummer, K.E. 2014. USDA Fragaria Crop Vulnerability Statement 2014. Germplasm Resources Information Network (GRIN). I:1-54.

Managing nut genetic resources under disease threat - (Peer Reviewed Journal)
Hummer, K.E., Postman, J.D., Preece, J.E. 2015. Managing nut genetic resources under disease threat. Acta Horticulturae. 1070:193-200.

Genetic diversity of medlar (Mespilus germanica) germplasm using microsatellite markers - (Peer Reviewed Journal)
Schaefer, K., Nyberg, A.M., Postman, J.D., Bassil, N.V. 2015. Genetic diversity of medlar (Mespilus germanica) germplasm using microsatellite markers. Acta Horticulturae. 1094:47-56.

Phylogeny and evolutionary histories of Pyrus L. revealed by phylogenetic trees and networks based on data from multiple DNA sequences - (Peer Reviewed Journal)
Zheng, X., Cai, D., Potter, D., Postman, J.D., Liu, J., Teng, Y. 2014. Phylogeny and evolutionary histories of Pyrus L. revealed by phylogenetic trees and networks based on data from multiple DNA sequences. Molecular Phylogenetics and Evolution. 80:54-65.

Sambucus genetic resources at the U.S.D.A. National Clonal Germplasm Repository, Corvallis, Oregon - (Peer Reviewed Journal)
Bushakra, J., Bassil, N.V., Finn, C.E., Hummer, K.E. 2015. Sambucus genetic resources at the USDA. National Clonal Germplasm Repository, Corvallis, Oregon. Acta Horticulture Proceedings. 1061:135-14.

Minor nutrients are critical for the improved growth of Corylus avellana shoot cultures - (Peer Reviewed Journal)
Hand, C., Reed, B.M. 2014. Minor nutrients are critical for the improved growth of Corylus avellana shoot cultures. Plant Cell Tissue And Organ Culture. 119:427-539. doi: 10.1007//s11240-014-0545-x.

Modeling optimal mineral nutrition for hazelnut micropropagation - (Peer Reviewed Journal)
Hand, C., Maki, S., Reed, B.M. 2014. Modeling optimal mineral nutrition for hazelnut micropropagation. Plant Cell Tissue and Organ Culture. 119:411-425. doi: 10.1007/s11240-014-0544-y.

Improving in vitro mineral nutrition for diverse germplasm - (Abstract Only)
Reed, B.M., Wada, S., Poothong, S., Hand, C., Kovalchuk, I., Niedz, R.P. 2014. Improving in vitro mineral nutrition for diverse germplasm. Abstract of International Horticultural Congress. p. 203.

Building the genomic infrastructure in black raspberry - (Abstract Only)
Bryant, D., Bushakra, J., Dossett, M., Vining, K., Filichkin, S., Weiland, G.E., Lee, J., Finn, C.E., Bassil, N.V., Mockler, T. 2014. Building the genomic infrastructure in black raspberry [abstract]. American Society for Horticultural Science Annual Conference.

Medium-term in vitro storage as a complementary germplasm preservation technique - (Abstract Only)
Reed, B.M. 2014. Medium-term in vitro storage as a complementary germplasm preservation technique. Abstract of International Horticultural Congress. 204.

List 47: currants - (Peer Reviewed Journal)
Hummer, K.E. 2014. List 47: currants. HortScience. 49(4):400-401.

List 47: blue honeysuckle - (Peer Reviewed Journal)
Hummer, K.E., Bors, R. 2014. List 47: blue honeysuckle. HortScience. 49(4):407-408.

Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.) - (Abstract Only)
Bushakra, J., Bradish, C.M., Weber, C.A., Scheerens, J., Dossett, M., Peterson, M.E., Fernandez, G., Lee, J., Bassil, N.V., Finn, C.E. 2014. Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.) [abstract]. American Society for Horticultural Science Annual Conference.

Black raspberry genetic and genomic resources development - (Abstract Only)
Bushakra, J., Bryant, D., Dossett, M., Gilmore, B.S., Filichkin, S., Weiland, G.E., Peterson, M.E., Bradish, C.M., Fernandez, G., Lewers, K.S., Graham, J., Lee, J., Mockler, T., Bassil, N.V., Finn, C.E. 2014. Black raspberry genetic and genomic resources development [abstract]. Annual Scientific Meeting of the American Society of Plant Biologists.

Effect of pretreatment methods of dormant pear buds on viability after cryopreservation - (Peer Reviewed Journal)
Zhumagulova, Z.B., Kovalchuk, I., Reed, B.M., Turdiev, T. 2014. Effect of pretreatment methods of dormant pear buds on viability after cryopreservation. World Applied Sciences Journal. 30(3):330-334. DOI: 10.5829/idosi.wasj.2014.30.03.14028.

Antioxidants and anti-stress compounds improve the survival of cryopreserved Arabidopsis seedlings - (Peer Reviewed Journal)
Ren, L., Zhang, D., Shen, X., Reed, B.M. 2014. Antioxidants and anti-stress compounds improve the survival of cryopreserved Arabidopsis seedlings. Acta Horticulturae. 1039:57-62.

Antioxidants and cryopreservation, the new normal? - (Peer Reviewed Journal)
Reed, B.M. 2014. Antioxidants and cryopreservation, the new normal?. Acta Horticulturae. 1039:41-48.

New technique for more rapid cryopreservation of dormant vegetative tree buds - (Peer Reviewed Journal)
Kovalchuk, I., Turdiev, T., Mukhitdinova, Z., Frolov, S., Kairova, G., Reed, B.M. 2014. New technique for more rapid cryopreservation of dormant vegetative tree buds. Acta Horticulturae. 1039:137-146.

Vaccinium species ploidy assessment - (Abstract Only)

Cryopreservation of native Kazakhstan apricot (Prunus armeniaca L) seeds and embryonic axes - (Peer Reviewed Journal)
Kovalchuk, I., Turdiev, T., Mukhitdinova, Z., Frovlow, S., Reed, B.M. 2014. Cryopreservation of native Kazakhstan apricot (Prunus armeniaca L) seeds and embryonic axes. CryoLetters. 35:85-89.

Luther Burbank's best berries - (Peer Reviewed Journal)
Hummer, K.E., Dossett, M., Finn, C.E. 2015. Luther Burbank's best berries. HortScience. 50(2):205-210.

Melatonin enhances the recovery of cryopreserved shoot tips of American elm (Ulmus Americana L.) - (Peer Reviewed Journal)
Uchendu, E.E., Shukla, M.R., Reed, B.M., Saxena, P.K. 2013. Melatonin enhances the recovery of cryopreserved shoot tips of American elm (Ulmus Americana L.). Journal of Pineal Research. 55:435-442. DOI:10.1111/jpi.12094.

Antioxidants and cryopreservation, the new normal? - (Abstract Only)
Reed, B.M. 2013. Antioxidants and cryopreservation, the new normal? [Abstract] Acta Horticulturae. Pg. 18.

Improving cryopreservation potential with antioxidant treatments - (Abstract Only)
Reed, B.M. 2013. Improving cryopreservation potential with antioxidant treatments. [Abstract] Cryobiology. Pg. 53.

Cryopreservation of dormant vegetative buds of tart and sweet cherry in liquid nitrogen - (Abstract Only)
Kovalchuk, I., Turdiev, T., Frovlow, S., Madiyeva, G., Reed, B.M. 2013. Cryopreservation of dormant vegetative buds of tart and sweet cherry in liquid nitrogen. International Society of Horticultural Science Proceedings. Pg. 101.

Luther Burbank's berries - (Abstract Only)
Hummer, K.E., Finn, C.E., Dossett, M. 2013. Luther Burbank's berries. HortScience. Available: http://ashs.confex.com/ashs/2013/webprogram/Paper15229.html.

OHxF paternity problem perplexes pear producers - (Peer Reviewed Journal)
Postman, J.D., Bassil, N.V., Kim, D. 2013. OHxF paternity problem perplexes pear producers. Journal of American Pomological Society. 67(3):157-167.

Fingerprints for fruit and nut crops - (Popular Publication)
Hummer, K.E., Bassil, N.V. 2013. Fingerprints for fruit and nut crops. Chronica Horticulturae. 53(2):3-6.

Sambucus genetic resources at the U.S. National Clonal Germplasm Repository [Abstract] - (Abstract Only)
Bushakra, J., Bassil, N.V., Finn, C.E., Hummer, K.E. 2013. Sambucus genetic resources at the U.S. National Clonal Germplasm Repository [Abstract]. Symposium Proceedings. 1061:135-145.

Developing a genotyping by sequencing protocol for linkage map construction in black raspberry - (Abstract Only)