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United States Department of Agriculture

Agricultural Research Service

Research Project: Integrated Strategies for Advanced Management of Fruit, Nut, and Oak Tree Diseases

Location: Crops Pathology and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

An evaluation of the flora adjacent to wine grape vineyards for the presence of alternative host plants of grapevine red blotch-associated virus - (Peer reviewed journal)
Bahder, B.W., Zalom, F.G., Sudarshana, M.R. 2016. An evaluation of the flora adjacent to wine grape vineyards for the presence of alternative host plants of grapevine red blotch-associated virus. Plant Disease. 100:1571-1574. doi: 10.1094/PDIS-02-16-0153-RE.

Phylogeny of geminivirus coat protein sequences and digital PCR aid in identifying Spissistilus festinus (Say) as a vector of Grapevine red blotch-associated virus - (Peer reviewed journal)
Bahder, B.W., Jayanth, M., Zalom, F.G., Sudarshana, M.R. 2016. Phylogeny of geminivirus coat protein sequences and digital PCR aid in identifying Spissistilus festinus (Say) as a vector of Grapevine red blotch-associated virus. Phytopathology. doi: 10.1094/PHYTO-03-16-0125-FI.

Cellobionic acid inhibition of cellobiohydrolase I and cellobiose dehydrogenase - (Peer reviewed journal)
Hildebrand, A., Addison, J.B., Kasuga, T., Fan, Z. 2016. Cellobionic acid inhibition of cellobiohydrolase I and cellobiose dehydrogenase. Biochemical Engineering Journal. 109: 236-242. DOI: 10.1016/j.bej.2016.01.024.

Development of disease-resistant walnut rootstocks: Integration of conventional and genomic approaches (SCRI-match Year 3) - (Proceedings)
Kluepfel, D.A., Leslie, C., Aradhya, M.K., Browne, G.T., Hasey, J., Pope, K., Mckenry, M., Westphal, A., Hackett, W., Bostock, R., Seybold, S., Dvorak, J., Luo, M., Coggeshall, M., Schlarbaum, S., Dandekar, A., Neale, D., Langley, C., Preece, J.E., Baumgartner, K. 2016. Development of disease-resistant walnut rootstocks: Integration of conventional and genomic approaches (SCRI-match Year 3). Walnut Research Conference. Walnut Research Reports 2015: 87-91.

Phytophthora ramorum causes cryptic bole cankers in Canyon line Oak - (Peer reviewed journal)
Swiecki, T., Aram, K., Kasuga, T., Bui, M.Q., Rizzo, D., Bernhardt, E. 2016. Phytophthora ramorum causes cryptic bole cankers in Canyon line Oak. Plant Health Progress. 17:20-26.

Preparation of mealybugs (Hemiptera: Pseudococcidae) for genetic characterization and morphological examination - (Peer reviewed journal)
Bahder, B.W., Bollinger, M., Sudarshana, M.R., Zalom, F.G. 2015. Preparation of mealybugs (Hemiptera: Pseudococcidae) for genetic characterization and morphological examination. Journal of Insect Science. doi: 10.1093/jisesa/iev086.

Detection of a new luteovirus in imported nectarine Trees: A case study to propose adoption of metagenomics in post-entry quarantine Reprint Icon - (Peer reviewed journal)
2015. Detection of a new luteovirus in imported nectarine Trees: A case study to propose adoption of metagenomics in post-entry quarantine. Phytopathology. 105(6):840-846.

Anaerobic soil disinfestation: a chemical-independent approach to pre-plant control of plant pathogens - (Peer reviewed journal)
Strauss, S.L., Kluepfel, D.A. 2015. Anaerobic soil disinfestation: a chemical-independent approach to pre-plant control of plant pathogens. Journal of Integrative Agriculture. 14(11):2309-2318. doi: 10.1016/S2095-3119(15)61118-2.

Detection of a new luteovirus in imported nectarine trees: A case study to propose adoption of metagenomics in post-entry quarantine Reprint Icon - (Peer reviewed journal)
Bag, S., Al Rwahnih, M., Li, A., Gonzalez, A., Rowhani, A., Uyemoto, J.K., Sudarshana, M.R. 2015. Detection of a new luteovirus in imported nectarine trees: A case study to propose adoption of metagenomics in post-entry quarantine. Phytopathology. 105:840-846.

Identification of Juglans wild relatives resistant to crown gall caused by Agrobacterium tumefaciens Reprint Icon - (Peer reviewed journal)
Kluepfel, D.A., Mcclean, A.E., Aradhya, M.K., Moersfelder, J.W. 2015. Identification of Juglans wild relatives resistant to crown gall caused by Agrobacterium tumefaciens. Acta Horticulturae. 1074:87-94.

Production of cellobionate from cellulose using an engineered Neurospora crassa strain with laccase and redox mediator addition Reprint Icon - (Peer reviewed journal)
Hildebrand, A., Kasuga, T., Fan, Z. 2015. Production of cellobionate from cellulose using an engineered Neurospora crassa strain with laccase and redox mediator addition. PLoS One. DOI: 10.1371/journal.pone.0123006.

Grapevine red blotch-associated virus, an emerging threat to the grapevine industry - (Peer reviewed journal)
Sudarshana, M.R., Perry, K.L., Fuchs, M. 2015. Grapevine red blotch-associated virus, an emerging threat to the grapevine industry. Phytopathology. doi: org/10.1094/PHYTO-12-14-0369-FI.

Detection and genetic diversity of Grapevine red blotch-associated virus isolates in table grape accessions in the National Clonal Germplasm Repository in California Reprint Icon - (Peer reviewed journal)
Al Rwahnih, M., Rowhani, A., Golino, D., Islas, C., Preece, J.E., Sudarshana, M.R. 2015. Detection and genetic diversity of Grapevine red blotch-associated virus isolates in table grape accessions in the National Clonal Germplasm Repository in California. Canadian Journal of Plant Pathology. 37:130-135.

Engineering Neurospora crassa for improved cellobiose and cellobionate production Reprint Icon - (Peer reviewed journal)
Hildebrand, A., Szewczyk, E., Lin, H., Kasuga, T., Fan, Z. 2015. Engineering Neurospora crassa for improved cellobiose and cellobionate production. Applied and Environmental Microbiology. 81:597-603.

Impact of biological amendments on Agrobacterium tumefaciens soil survival Reprint Icon - (Peer reviewed journal)
Strauss, S.L., Stover, D.A., Kluepfel, D.A. 2014. Impact of biological amendments on Agrobacterium tumefaciens soil survival. Applied Soil Ecology. 87:39-48.

Effect of anaerobic soil disinfestation and vermicompost on soilborne phytopathogenic agents under tree-crop nursery conditions - (Abstract only)

A self-excising beta-recombinase/six cassette for repetitive gene deletion and homokaryon purification in Neurospora crassa Reprint Icon - (Peer reviewed journal)
Szewczyk, E., Kasuga, T., Fan, Z. 2014. A self-excising beta-recombinase/six cassette for repetitive gene deletion and homokaryon purification in Neurospora crassa. Journal of Microbiological Methods. 91(100):17-23.

Incidence of Agrobacterium tumefaciens biovar 1 in and on ‘Paradox’ (Juglans hindsii x Juglans regia) walnut seed collected from commercial nurseries Reprint Icon - (Peer reviewed journal)
Yakabe, L.E., Parker, S.R., Kluepfel, D.A. 2014. Incidence of Agrobacterium tumefaciens biovar 1 in and on ‘Paradox’ (Juglans hindsii x Juglans regia) walnut seed collected from commercial nurseries. Plant Disease. 98:766-770.

Development of disease-resistant walnut rootstocks: Integration of conventional and genomic approaches - (Proceedings)
Kluepfel, D.A., Browne, G.T., Mckenry, M., Hasey, J., Leslie, C., Aradhya, M.K., Hackett, W., Preece, J.E., Bostock, R., Seybold, S. 2014. Development of disease-resistant walnut rootstocks: Integration of conventional and genomic approaches. Walnut Research Conference. 77-87.

Epigenetic mechanisms and the evolution of virulence Reprint Icon - (Review article)
Kasuga, T., Gijzen, M. 2013. Epigenetic mechanisms and the evolution of virulence. Trends in Microbiology. 21:575-582.

Grapevine red blotch Reprint Icon - (Book / chapter)
Sudarshana, M.R., Fuchs, M. 2015. Grapevine red blotch. In: Wilcox, W.F., Gubler, W.D., Uyemoto, J.K., editors. Compendium of Grape Diseases. 2nd edition. St. Paul, MN: American Phytopathological Society Press. p. 122-123.

Sex-linked phenotypic divergence in the hermaphrodite fungus Neurospora tetrasperma Reprint Icon - (Peer reviewed journal)
Samils, N., Gioti, A., Karlsson, M., Yu, S., Kasuga, T., Bastiaans, E., Wang, Z., Li, N., Townsend, J., Johannesson, H. 2013. Sex-linked phenotypic divergence in the hermaphrodite fungus Neurospora tetrasperma. Proceedings of the Royal Society of London: Biological Sciences. doi:10.1098/rspb.2013.0862.

Gene from a novel plant virus satellite from grapevine identifies a viral satellite lineage Reprint Icon - (Peer reviewed journal)
Al Rwahnih, M., Daubert, S.D., Sudarshana, M.R., Rowhani, A. 2013. Gene from a novel plant virus satellite from grapevine identifies a viral satellite lineage. Virus Genes. 47:114-118.

PRP8 intein in cryptic species of Histoplasma capsulatum: evolution and phylogeny Reprint Icon - (Peer reviewed journal)
Theodoro, R.C., Scheel, C.M., Brandt, M.E., Kasuga, T., Bagagli, E. 2013. PRP8 intein in cryptic species of Histoplasma capsulatum: evolution and phylogeny. Infection, Genetics and Evolution. 18:174-182.

Managing the almond and stone fruit replant disease complex with less soil fumigant Reprint Icon - (Peer reviewed journal)
Browne, G.T., Lampinen, B.D., Holtz, B.A., Doll, D.A., Upadhyaya, S.K., Schmidt, L.S., Bhat, R.G., Udompetailkul, V., Coates, R.W., Hanson, B.D., Klonsky, K.M., Gao, S., Wang, D., Gillis, M., Gerik, J.S., Johnson, R.A. 2013. Managing the almond and stone fruit replant disease complex with less soil fumigant. California Agriculture. 67(3):128-138.

TIF film, substrates and nonfumigant soil disinfestation maintain fruit yields Reprint Icon - (Peer reviewed journal)
Fennimore, S.A., Serohijos, R., Samtani, J.B., Ajwa, H.A., Subbarao, K.V., Martin, F.N., Daugovish, O., Legard, D., Browne, G.T., Muramoto, J., Shennan, C., Klonsky, K. 2013. TIF film, substrates and nonfumigant soil disinfestation maintain fruit yields. California Agriculture. 67(3):139-145.

Grapevine red blotch-associated virus is widespread in California and U.S. vineyards. Reprint Icon - (Abstract only)
Sudarshana, M.R., Gonzalez, A., Dave, A., Wei, A., Smith, R., Anderson, M.M., Walker, M.A. 2013. Grapevine red blotch-associated virus is widespread in California and U.S. vineyards. . Phytopathology. 103:458.

Association of a DNA virus with grapevines affected by red blotch disease in northern California Reprint Icon - (Peer reviewed journal)
Al Rwahnih, M., Dave, A., Anderson, M.M., Rowhani, A., Uyemoto, J.K., Sudarshana, M.R. 2013. Association of a DNA virus with grapevines affected by red blotch disease in northern California. Phytopathology. 103:1069-1076.

Direct cellobiose production from cellulose using sextuple beta-glucosidase gene deletion Neurospora crassa mutants Reprint Icon - (Peer reviewed journal)
Wu, W., Hildebrand, A., Kasuga, T., Xiong, X., Fan, Z. 2013. Direct cellobiose production from cellulose using sextuple beta-glucosidase gene deletion Neurospora crassa mutants. Enzyme and Microbial Technology. 18:184-189.

Efficient sequential repetitive gene deletions in Neurospora crassa Reprint Icon - (Peer reviewed journal)
Szewczyk, E., Kasuga, T., Fan, Z. 2013. Efficient sequential repetitive gene deletions in Neurospora crassa. Journal of Microbiological Methods. 92:236-243.

Detection and characterization of Histoplasma capsulatum in a German badger (Meles meles) by ITS sequencing and multilocus sequencing analysis Reprint Icon - (Peer reviewed journal)
Eisenberg, T., Seeger, H., Kasuga, T., Eskens, U., Sauerwald, C., Kaim, U. 2013. Detection and characterization of Histoplasma capsulatum in a German badger (Meles meles) by ITS sequencing and multilocus sequencing analysis. Medical Mycology. 51:337-344.

Proceedings of the first international symposium on wild relatives of subtropical and temperate fruit and nut crops - (Proceedings)
Kluepfel, D.A., Aradhya, M.K., (Editors), 2012. Proceedings of the First International Symposium on Wild Relatives of Subtropical and Temperate Fruit and Nut Crops. Belgium. Acta Horticulturae 948.

Chapter 10 – Management to Reduce Greenhouse Gas Emissions in Western U.S. Croplands Reprint Icon - (Book / chapter)
Halvorson, A.D., Steenwerth, K.L., Suddick, E.C., Liebig, M.A., Bronson, K.F., Collins, H.P. 2012. Chapter 10 – Management to Reduce Greenhouse Gas Emissions in Western U.S. Croplands. Elsevier. 167-182.

Evaluation of wild juglans species for crown gall resistance - (Abstract only)
Kluepfel, D.A., Mcclean, A.E., Aradhya, M.K., Moersfelder, J.W., Dull, A., Marsden, C., Hackett, W. 2012. Evaluation of wild juglans species for crown gall resistance. Walnut Research Conference. 313-317.

Last Modified: 2/23/2016
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