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United States Department of Agriculture

Agricultural Research Service

Related Topics


Location: Animal Parasitic Diseases Laboratory

2013 Annual Report

1a. Objectives (from AD-416):
To investigate sensitive methods for the detection of Toxoplasma in water.

1b. Approach (from AD-416):
Different methods to detect Toxoplasma DNA and viable oocysts will be investigated using water samples intentionally contaminated with different numbers of oocysts.

3. Progress Report:
Cryptosporidium spp. and Toxoplasma gondii are important coccidian parasites that have caused waterborne and foodborne disease outbreaks worldwide. Techniques like subtractive hybridization, microarrays, and quantitative reverse transcriptase real-time polymerase chain reaction (RT-qPCR) assays that measure gene expressions have been used to understand the roles of specific genes regulating stage developments and pathogenesis of these parasites. Key to the success of these approaches is isolating high quality mRNA, which is difficult to isolate from coccidian oocysts. Although several commercial kits can theoretically provide high quality mRNA to study gene expressions in oocysts, their performance has not been evaluated on oocysts. In this study, four RNA extraction kits: RiboPure-bacteria, MasterPure RNA, RNeasy micro, and TRIzol LS reagent kits were evaluated. Results revealed that all four kits easily isolated total RNA from C. parvum oocysts. Analysis of total RNA quality as measured by RNA integrity number (RIN) showed sufficiently high quality values ranging from 8.4 to 9.8. However, genomic DNA (gDNA) contamination was present in the RNA extracts. Additional DNase I treatment effectively removed gDNA contaminants, but partially degraded the RNA (RIN = 5.0 – 7.7). Isolations of total RNA from T. gondii oocysts were also attempted but were unsuccessful, yielding degraded RNA extracts. Overall, the RNeasy micro kit with additional DNase I treatment was the most effective for extracting high quality total RNA from C. parvum, but not from T. gondii oocysts, for transcriptome analyses.

4. Accomplishments

Last Modified: 10/16/2017
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