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United States Department of Agriculture

Agricultural Research Service

Research Project: Intervention Strategies to Control and Prevent Disease Outbreaks Caused by Avian Influenza and Other Emerging Poultry Pathogens

Location: Exotic & Emerging Avian Viral Diseases Research

2012 Annual Report


1a. Objectives (from AD-416):
1. Characterize variant and emerging avian influenza viruses in live poultry markets and commercial production systems. 2. Identify genetic and biological determinants of virulence, tissue tropism and host range of avian influenza virus. 3. Identify genetic and biological determinants of avian influenza virus susceptibility and resistance in avian species. 4. Improve existing diagnostic tests and testing strategies for avian influenza virus surveillance, detection, and recovery from disease outbreaks. 5. Develop new vaccine platforms designed to control and prevent avian influenza virus outbreaks.


1b. Approach (from AD-416):
These objectives include a combination of basic and applied research to give us the knowledge and tools to effectively control avian influenza virus (AIV). The first objective focuses on characterizing new and emerging strains of AIV, initially by genome sequencing and analysis, then by pathogenesis and transmission studies, and finally by antigenic characterization. The second objective will elucidate specific viral factors involved in pathogenesis and virulence at a molecular level including utilizaiton of variant isolates initially characterized under objective 1. The third objective will investigate the viral factors involved in transmission and host adaptation of AIV among avian species with reverse genetics and pathogensis studies. Under objective 4 diagnostic tests will be improved by characterizing novel isolates to assure specificity and by adapting novel technologies to improve sentivity and specificity. New vaccines will be developed and evaluated through a variety of approaches including antigenic and molecular characterization for objective 5.


3. Progress Report:
During FY 2012 substantial progress was made for all milestones and progress was made on all objectives of the project. The H5N1 “bird flu” was first seen in Egypt in 2006, and Egypt remains one of a handful of countries where the H5N1 bird flu continues to infect poultry. Since influenza can mutate rapidly it is crucial to maintain current genetic data on the virus, which provides information on virulence, whether diagnostic test will detect the virus and relationship with current vaccines (the more closely related it is to vaccines the better the vaccines work). Through a collaboration with Egypt SEPRL has obtain isolates through 2010 and has completed gathering genetic information and analyzing this information. It appears that the virus has now mutated into several groups which will make control more difficult because vaccine is less effective against the mutant groups. Monitoring of wild bird specimens for avian influenza virus (AIV) to understand influenza ecology has been an ongoing effort since 1998. Testing samples from wild birds for AIV by polymerase chain reaction (PCR) which detect the genetic material of the virus. If that test is positive attempts are made to detect live virus in the specimen, then analyze its genetics. In this last group of sample no live viruses were detected. This provides data that the types of birds tested probably do not harbor AIV. One of the most widely used diagnostic tests for AIV detects the genetic material of the virus, but the sensitivity can be affected by extraneous material in the sample or virus levels may be too low. One method to improve sensitivity is to incubate the sample in culture for a short time to increase the amount of virus. This is faster and cheaper than culture alone. Nine isolates of diverse origins were tested and it demonstrated that incubating sample material in culture for 24 hours could improve sensitivity by 10 and up to 100 times testing sample material directly. Substantial progress was also made in determining the genes involved in virulence for H5N1 highly pathogenic AIV infection in ducks and the effect of duck age and species on clinical disease. Vaccine work with ducks, chickens and turkeys continues including evaluating commercially available vaccines for efficacy against newly emerging strains of AIV and exploring how maternally derived immunity impacts vaccine efficacy. The Southeast Poultry Research Laboratory continues to collaborate with different Internation Organizations. This includes a Collaborating Center status with the World Organization for Animal Health (O.I.E.) on Avian Influenza and Newcastle Disease virus with the organization. In addition they were designated a Food and Agriculture Organization (FAO) Reference Center on Avian Influenza and Newcastle disease virus. We contribute research information and expertise for the control of these diseases around the world.


4. Accomplishments


Review Publications
Swayne, D.E., Pavade, G., Hamilton, K., Vallat, B., Miyagishima, K. 2011. Assessment of national strategies for control of high pathogenicity avian influenza and low pathogenicity notifiable avian influenza in poultry, with emphasis on vaccines and vaccination. OIE Scientific and Technical Review. 30(3):839-870.

Swayne, D.E., Eggert, D.L., Beck, J.R. 2012. Reduction of high pathogenicity avian influenza virus in eggs from chickens once or twice vaccinated with an oil-emulsified inactivated H5 avian influenza vaccine. Vaccine. Vaccine 30:4964-4970.

Cagle, C.A., To, T., Nguyen, T., Wasilenko, J.L., Adams, S.C., Cardona, C.J., Spackman, E., Suarez, D.L., Pantin Jackwood, M.J. 2011. Pekin and Muscovy ducks respond differently to vaccination with a H5N1 highly pathogenic avian influenza (HPAI) commercial inactivated vaccine. Vaccine. 29(38):6549-6557.

Wasilenko, J.L., Pantin Jackwood, M.J., Khan, T., Ahmed, A., Rehmani, S., Lone, N., Swayne, D.E., Spackman, E. 2012. Characaterization of H5N1 highly pathogenic avian influenza viruses isolated from poultry in Pakistan 2006-2008. Virus Genes. 44:247-52.

Pantin Jackwood, M.J., Smith, D.M., Wasilenko, J.L., Spackman, E.V. 2012. Low pathogenicity avian influenza viruses infect chicken layers by different routes of inoculation. Avian Diseases. 56:276-281.

Belser, J., Gustin, K.M., Maines, T.R., Pantin Jackwood, M.J., Katz, J.M., Tumpey, T.M. 2012. Influenza virus respiratory infection and transmission following ocular inoculation in ferrets. PLoS Pathogens. 8(3):e1002569.

Wilcox, B.R., Knutsen, G.A., Berdeen, J., Goekjian, V., Poulson, R., Goyal, S., Sreevastan, S., Cardona, C., Berghaus, R., Swayne, D.E., Yabsley, M., Stallknecht, D. 2011. Influenza-A viruses in ducks in northwestern Minnesota: fine scale spatial and temporal variation in prevalence and subtype diversity. PLoS One. 6(9):e24010.

Sa E Silva, M., Mathieu, C.M., Kwon, Y., Pantin Jackwood, M.J., Swayne, D.E. 2011. Experimental infection with low and high pathogenicity H7N3 Chilean avian influenza viruses in Chiloe Wigeon (Anas sibilatrix) and Cinnamon Teal (Anas cyanoptera). Avian Diseases. 55(3):459-461.

Wang, L., Qin, Z., Pantin Jackwood, M.J., Faulkner, O.B., Suarez, D.L., Garacia, M., Lupiani, B., Reddy, S., Saif, Y., Lee, C. 2011. Development of DIVA (differentiation of infected from vaccinated animals) vaccines utilizing heterologous NA and NS1 protein strategies for the control of triple reassortant H3N2 influenza in turkeys. Vaccine. 29:7966-7974.

Abbas, M.A., Spackman,E., Fouchier, R., Smith, D., Ahmed,Z., Siddique,N., Sarmento,L., Naeem,K., McKinley, E.T., Hameed,A., Rehmani,S., Swayne, D.E. 2011. H7 avian influenza virus vaccines protect chickens against challenge with antigenically diverse isolates. Vaccine. 29(43):7424-7429.

Ladman, B., Spackman, E., Gelb, J. 2012. Comparison of pooling 11 or 5 oropharyngeal swabbings for detecting avian influenza virus by real-time reverse transcription-PCR in broiler chickens. Avian Diseases. 56(1):227-229.

Chmielewski, R.A., Day, J.M., Spatz, S.J., Yu, Q., Gast, R.K., Zsak, L., Swayne, D.E. 2011. Thermal inactivation of avian viral and bacterial pathogens in an effluent treatment system within a biosafety level 2 and 3 enhanced facility. Applied Biosafety. 16(4):206-217.

Pearce, M.B., Belser, J., Gustin, K.M., Pappas, C., Houser, K.V., Sun, X., Maines, T.R., Pantin Jackwood, M.J., Katz, J.M., Tumpey, T.M. 2012. Seasonal trivalent inactivated influenza vaccine protects against 1918 Spanish influenza virus in ferrets. Journal of Virology. 86(13):7118-7125.

Josset, L., Belser, J., Pantin Jackwood, M.J., Chang, J., Chang, S., Belisle, S., Tumpey, T.M., Katze, M.G. 2012. Implication of inflammatory macrophages, nuclear receptors and interferon regulatory factors in increased virulence of pandemic 2009 H1N1 influenza A virus after host adaptation. Journal of Virology. 86(13):7192-7206.

Pavade, G., Awada, L., Hamilton, K., Swayne, D.E. 2011. The influence of economic indicators, poultry density and the performance of Veterinary Services on the control of high-pathogenicity avian influenza in poultry. OIE Scientific and Technical Review. 30(3):661-671.

Last Modified: 10/16/2017
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