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ARS Home » Pacific West Area » Davis, California » Crops Pathology and Genetics Research » Research » Research Project #432523

Research Project: Integrated Disease Management Strategies for Woody Perennial Species

Location: Crops Pathology and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Asexual evolution and forest conditions drive genetic parallelism in Phytophthora ramorum Reprint Icon - (Peer Reviewed Journal)
Yuzon, J., Travadon, R., Malar C, M., Tripathy, S., Rank, N., Mehl, H., Rizzo, D., Cobb, R., Small, C., Tang, T., McCown, H., Garbelotto, M., Kasuga, T. 2020. Asexual evolution and forest conditions drive genetic parallelism in Phytophthora ramorum. Microorganisms. 8(6). https://doi.org/10.3390/microorganisms8060940.

Independent whole-genome duplications define the architecture of the genomes of the devastating West African cacao black pod pathogen Phytophthora megakarya and its close relative Phytophthora palmivora Reprint Icon - (Peer Reviewed Journal)
Morales-Cruz, A., Ali, S.S., Minio, A., Figueroa-Balderas, R., Garcia, J.F., Kasuga, T., Puig, A.S., Marelli, J., Bailey, B.A., Cantu, D. 2020. Independent whole-genome duplications define the architecture of the genomes of the devastating West African cacao black pod pathogen Phytophthora megakarya and its close relative Phytophthora palmivora. G3, Genes/Genomes/Genetics. 10(6). https://doi.org/10.1534/g3.120.401014.

Field evaluation of olive (Olea europaea) genotypes for resistance to Pseudomonas savastanoi pv savastanoi Reprint Icon - (Peer Reviewed Journal)
Salman, M., Kluepfel, D.A., Greenhut, R., Preece, J.E., Ferguson, L. 2020. Field evaluation of olive (Olea europaea) genotypes for resistance to Pseudomonas savastanoi pv savastanoi. Journal of Plant Pathology. 102:663-670. https://doi.org/10.1007/s42161-020-00549-8.

First report of Phytophthora chlamydospora causing crown and root rot on almond in California Reprint Icon - (Peer Reviewed Journal)
Browne, G.T., Ott, N.J., Forbes, H., Yaghmour, M.A., Milliron, L.K. 2020. First report of Phytophthora chlamydospora causing crown and root rot on almond in California. Plant Disease. 104(7):2033. https://doi.org/10.1094/PDIS-10-19-2072-PDN.

A comparative study on physiological responses to drought in walnut genotypes (RX1, Vlach, VX211) commercially available as rootstocks Reprint Icon - (Peer Reviewed Journal)
Knipfer, T., Grom, J., Reyes, C., Momayyezi, M., McElrone, A.J., Kluepfel, D.A. 2020. A comparative study on physiological responses to drought in walnut genotypes (RX1, Vlach, VX211) commercially available as rootstocks. Trees. 34(3):665-678. https://doi.org/10.1007/s00468-019-01947-x.

Temporal responses of microbial communities to anaerobic soil disinfestation Reprint Icon - (Peer Reviewed Journal)
Poret-Peterson, A.T., Sayed , N., Glyzewski, N., Forbes, H., Gonzalez-Orta, E., Kluepfel, D.A. 2019. Temporal responses of microbial communities to anaerobic soil disinfestation. Microbial Ecology. 80:191-201. https://doi.org/10.1007/s00248-019-01477-6.

First report of grapevine red blotch virus, the causal agent of grapevine red blotch disease in vitis vinifera in North Carolina Reprint Icon - (Peer Reviewed Journal)
Hoffmann, M., Talton, W., Nita, M., Taylor, J., Al Rwahnih, M., Sudarshana, M.R., Almeyda, C. 2020. First report of grapevine red blotch virus, the causal agent of grapevine red blotch disease in vitis vinifera in North Carolina. Plant Disease. 104(4):1266-1266. https://doi.org/10.1094/PDIS-07-19-1539-PDN.

Homoethanol production from cellobionate and glycerol using recombinant Klebsiella oxytoca strains - (Peer Reviewed Journal)

First report of Phytopythium helicoides causing root rot on peach rootstock in California Reprint Icon - (Peer Reviewed Journal)
Browne, G.T., Ott, N.J., Fichtner, E. 2019. First report of Phytopythium helicoides causing root rot on peach rootstock in California. Plant Disease. 103(11):2968. https://doi.org/10.1094/PDIS-09-18-1697-PDN.

Haplotype-phased genome assembly of virulent Phytophthora ramorum isolate ND886 facilitated by long-read sequencing reveals effector polymorphisms and copy number variation Reprint Icon - (Peer Reviewed Journal)
Malar, M.C., Yuzon, J.D., Das, S., Das, A., Panda, A., Ghosh, S., Tyler, B.M., Kasuga, T., Tripathy, S. 2019. Haplotype-phased genome assembly of virulent Phytophthora ramorum isolate ND886 facilitated by long-read sequencing reveals effector polymorphisms and copy number variation. Molecular Plant-Microbe Interactions. 32(8):1047-1060. https://doi.org/10.1094/MPMI-08-18-0222-R.

Updated assembly of Phytophthora ramorum pr102 isolate incorporating long reads from PacBio sequencing Reprint Icon - (Peer Reviewed Journal)
Malar C, M., Yuzon, J.D., Panda, A., Kasuga, T., Tripathy, S. 2019. Updated assembly of Phytophthora ramorum pr102 isolate incorporating long reads from PacBio sequencing. Molecular Plant-Microbe Interactions. 32(11):1472-1474. https://doi.org/10.1094/MPMI-05-19-0147-A.

Molecular analyses identify hybridization-mediated nuclear evolution in newly discovered fungal hybrids Reprint Icon - (Peer Reviewed Journal)
Sillo, F., Gonthier, P., Lockman, B., Kasuga, T., Garbelotto, M. 2019. Molecular analyses identify hybridization-mediated nuclear evolution in newly discovered fungal hybrids. Ecology and Evolution. 00:1–18. https://doi.org/10.1002/ece3.5238.

Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species Reprint Icon - (Peer Reviewed Journal)
Zhu, T., Wang, L., You, F.M., Rodriguez, J., Deal, K., Chen, L., Li, J., Chakraborty, S., Balan, B., Jiang, C., Browne, P.J., Leslie, C., Aradhya, M.K., Dandekar, A., McGuire, P.E., Kluepfel, D.A., Dvorak, J., Ming-Chen, L. 2019. Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species. Horticulture Research. 6:55. https://doi.org/10.1038/s41438-019-0139-1.

A Grapevine red blotch virus vector: the three-cornered alfalfa hopper (3CAH), Spissistilus festinus, in Napa vineyards - (Trade Journal)
Preto, C.R., Sudarshana, M.R., Zalom, F.G. 2019. A Grapevine red blotch virus vector: the three-cornered alfalfa hopper (3CAH), Spissistilus festinus, in Napa vineyards. American Vineyard Magazine. 28:14-18.

Seasonal dynamics of Spissistilus festinus (Hemiptera: Membracidae) in a Californian vineyard Reprint Icon - (Peer Reviewed Journal)
Preto, C.R., Bahder, B.W., Bick, E.N., Sudarshana, M.R., Zalom, F.G. 2019. Seasonal dynamics of Spissistilus festinus (Hemiptera: Membracidae) in a Californian vineyard. Journal of Economic Entomology. 112(3):1138-1144. https://doi.org/10.1093/jee/toz022.

Spatial associations of vines infected with grapevine red blotch virus in Oregon vineyards Reprint Icon - (Peer Reviewed Journal)
Dalton, D.T., Hilton, R.J., Kaiser, C., Daane, K.M., Sudarshana, M.R., Vo, J., Zalom, F., Buser, J.Z., Walton, V.M. 2019. Spatial associations of vines infected with grapevine red blotch virus in Oregon vineyards. Plant Disease. 103(7):1507-1514. https://doi.org/10.1094/PDIS-08-18-1306-RE.

Shifts in soil bacterial communities as a function of carbon source used during anaerobic soil disinfestation Reprint Icon - (Peer Reviewed Journal)
Poret-Peterson, A.T., Albu, S., McClean, A.E., Kluepfel, D.A. 2019. Shifts in soil bacterial communities as a function of carbon source used during anaerobic soil disinfestation. Frontiers in Environmental Science. 6:160. https://doi.org/10.3389/FENVS.2018.00160.

Homoethanol production from Glycerol and Gluconate using recombinant Klebsiella Oxytoca strains Reprint Icon - (Peer Reviewed Journal)
Tao, W., Wang, Y., Walters, E., Lin, H., Li, S., He, H., Kasuga, T., Zhiliang, F. 2019. Homoethanol production from glycerol and gluconate using recombinant Klebsiella oxytoca strains. Applied and Environmental Microbiology. 85:e02122-18. https://doi.org/10.1128/AEM.02122-18.

Characterization of grapevine leafroll-associated virus 3 genetic variants and application towards RT-qPCR assay design Reprint Icon - (Peer Reviewed Journal)
Diaz-Lara, A., Klaassen, V., Stevens, K., Sudarshana, M.R., Rowhani, A., Maree, H.J., Chooi, K.M., Blouin, A.G., Habili, N., Song, Y., Aram, K., Arnold, K., Cooper, M.L., Wunderlich, L., Battany, M.C., Bettiga, L.J., Smith, R.J., Bester, R., Xiao, H., Meng, B., Preece, J.E., Golino, D., Alrwahnih, M. 2018. Characterization of grapevine leafroll-associated virus 3 genetic variants and application towards RT-qPCR assay design. PLoS One. 13(12):e0208862. https://doi.org/10.1371/journal.pone.0208862.

Vitis vinifera (Vitales: Vitaceae) as a reproductive host of Spissistilus festinus (Hemiptera: Membracidae) Reprint Icon - (Peer Reviewed Journal)
Preto, C.R., Sudarshana, M.R., Bollinger, M.L., Zalom, F.G. 2018. Vitis vinifera (Vitales: Vitaceae) as a reproductive host of Spissistilus festinus (Hemiptera: Membracidae). Journal of Insect Science. 18(6):1-7. https://doi.org/10.1093/jisesa/iey129.

Anaerobic soil disinfestation as an alternative to soil fumigation for management of Prunus replant disease: effects on tree growth and yield Reprint Icon - (Peer Reviewed Journal)
Browne, G.T., Ott, N.J., Poret-Peterson, A.T., Lampinen, B.D., Metcalf, S.G., Yaghmour, M.A., Holtz, B.A., Culumber, M., Brar, G., Doll, D.A. 2018. Anaerobic soil disinfestation as an alternative to soil fumigation for management of Prunus replant disease: effects on tree growth and yield. Acta Horticulturae. 1219:287-294. https://doi.org/10.17660/ActaHortic.2018.1219.44.

Feeding and reproductive hosts of Spissistilus festinus (Say) (Hemiptera: Membracidae) found in Californian vineyards Reprint Icon - (Peer Reviewed Journal)
Preto, C.R., Sudarshana, M.R., Zalom, F.G. 2018. Feeding and reproductive hosts of Spissistilus festinus (Say) (Hemiptera: Membracidae) found in Californian vineyards. Journal of Economic Entomology. 111(6), 2531-2535. https://doi.org/10.1093/jee/toy236.

Genomic variation among and within six Juglans species Reprint Icon - (Peer Reviewed Journal)
Stevens, K.A., Woeste, K., Chakraborty, S., Crepeau, M.W., Leslie, C.A., Martinez-Garcia, P.J., Puiu, D., Romero-Severson, J., Coggeshall, M., Dandekar, A.M., Kluepfel, D.A., Neale, D.B., Salzberg, S.L., Langley, C.H. 2018. Genomic variation among and within six Juglans species. G3, Genes/Genomes/Genetics. 8(7):2153-2165. https://doi.org/10.1534/g3.118.200030.

Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts Reprint Icon - (Peer Reviewed Journal)
Elliot, M., Yuzon, J., Malar, M.C., Tripathy, S., Bui, M., Chastagner, G.A., Coats, K., Rizzo, D.M., Garbelotto, M., Kasuga, T. 2018. Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts. BMC Genomics. 19:320. https://doi.org/10.1186/s12864-018-4709-7.

Draft genome sequence of agrobacterium tumefaciens biovar 1 strain 186, isolated from walnut Reprint Icon - (Peer Reviewed Journal)
Poret-Peterson, A.T., Bhatnagar, S., McClean, A.E., Kluepfel, D.A. 2017. Draft genome sequence of agrobacterium tumefaciens biovar 1 strain 186, isolated from walnut. Genome Announcements. 5(46):e01232-17. https://doi.org/10.1128/genomeA.01232-17.

Investigating the spread and effect of Grapevine red blotch virus in California-grown Zinfandel - (Proceedings)
Wunderlich, L.R., Bollinger, M.L., Castillo, M.N., Preto, C.R., Bahder, B.W., Zalom, F.G., Sudarshana, M.R. 2017. Investigating the spread and effect of Grapevine red blotch virus in California-grown Zinfandel. In: Proceedings of XXth Group of International Experts of Vitivinicultural Systems for CoOperation(GiESCO) International Meeting, November 5-10, Mendoza, Argentina.

Implicated vectors and spread of grapevine red blotch-associated virus in Oregon vineyards - (Abstract Only)
Dalton, D.T., Walton, V.M., Hilton, R.J., Sudarshana, M.R. 2017. Implicated vectors and spread of grapevine red blotch-associated virus in Oregon vineyards. Oregon Wine Research Institute Grape Day, April 6, 2017, Corvallis, Oregon.

Red blotch in Oregon - (Abstract Only)
Walton, V.M., Dalton, D.T., Hilton, R.J., Sudarshana, M.R. 2017. Red blotch in Oregon. Oregon Wine Research Institute Grape Day, April 6, 2017, Corvallis, Oregon.