Research Project: Assessing and Managing Antibiotic Resistance, Nutrients, and Pathogens In Animal-Impacted Agroecosystems

Location: Agroecosystem Management Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Resistome and mobilome in surface runoff from manured soil as affected by setback distance - (Peer Reviewed Journal)
Mware, N.A., Hall, M.C., Rejendran, S., Gilley, J.E., Bartelt-Hunt, S.L., Zhang, Y., Li, X. 2022. Resistome and mobilome in surface runoff from manured soil as affected by setback distance. Journal of Hazardous Materials. 429. Article 128278. https://doi.org/10.1016/j.jhazmat.2022.128278.

Emission of volatile organic compounds as affected by beef cattle diet and soil water content - (Peer Reviewed Journal)
Woodbury, B.L., Gilley, J.E., Parker, D.B., Marx, D.B. 2022. Emission of volatile organic compounds as affected by beef cattle diet and soil water content. Transactions of the ASABE. 65(1): 123-133. https://doi.org/10.13031/ja.14587.

Nitrate-N removal rate variabilities in floating treatment wetland mesocosms with diverse planting and carbon amendment designs - (Peer Reviewed Journal)
Messer, T.L., Miller, D.N., Little, H., Oathout, K. 2021. Nitrate-N removal rate variabilities in floating treatment wetland mesocosms with diverse planting and carbon amendment designs. Ecological Engineering. https://doi.org/10.1016/j.ecoleng.2021.106444.

Differential survival of non-O157 Shiga-toxigenic Escherichia coli serotypes in manure-impacted water - (Peer Reviewed Journal)
Durso, L.M., Miller, D.N., Gilley, J.E. 2021. Differential survival of non-O157 Shiga-toxigenic Escherichia coli serotypes in manure-impacted water. Foodborne Pathogens and Disease. 2021. https://doi.org/10.1089/fpd.2021.0024.

Finding what is inaccessible: Antimicrobial resistance language use among the One Health domains - (Peer Reviewed Journal)
Wind, L., Briganti, J., Brown, A.M., Neher, T.P., Davis, M.F., Durso, L.M., Spicer, T., Lansing, S. 2021. Finding what is inaccessible: Antimicrobial resistance language use among the One Health domains. Antibiotics. 10:385. https://doi.org/10.3390/antibiotics10040385.

Simulated winter incubation of soil with swine manure differentially affects multiple antimicrobial resistance elements - (Peer Reviewed Journal)
Miller, D.N., Jurgens, M., Durso, L.M., Schmidt, A. 2020. Simulated winter incubation of soil with swine manure differentially affects multiple antimicrobial resistance elements. Frontiers in Microbiology. (11):3235. https://doi.org/10.3389/fmicb.2020.611912.

Antibiotic resistance genes in swine manure slurry as affected by pit additives and facility disinfectants - (Peer Reviewed Journal)
Hall, M.C., Bartelt-Hunt, S.L., Gilley, J.E., Eskridge, K.M., Lu, X., Snow, D.D. 2020. Antibiotic resistance genes in swine manure slurry as affected by pit additives and facility disinfectants. Environmental Pollution. 761(2021):143287. https://doi.org/10.1016/j.scitotenv.2020.143287.

Accumulation and release of nutrients by immersed stalks collected on selected dates following harvest - (Peer Reviewed Journal)
Gilley, J.E., Marx, D.B. 2020. Accumulation and release of nutrients by immersed stalks collected on selected dates following harvest. Water, Air, and Soil Pollution. 231:384. https://doi.org/10.1007/s11270-020-04765-x.

Impact of setback distances on transport and antibiotic resistance profiles of fecal indicators from manure-amended fields - (Peer Reviewed Journal)
Durso, L.M., Gilley, J.E., Meyers, M.A., Miller, D.N., Li, X., Schmidt, A.M. 2020. Impact of setback distances on transport and antibiotic resistance profiles of fecal indicators from manure-amended fields. Agrosystems, Geosciences & Environment. 3:e220081. https://doi.org/10.1002/agg2.20081.

Retention of swine slurry constituents in soil and crop residue - (Peer Reviewed Journal)
Gilley, J.E., Bartelt-Hunt, S.L., Eskridge, K.M., Li, X., Schmidt, A.M., Snow, D.D. 2020. Retention of swine slurry constituents in soil and crop residue. Transactions of the ASABE. 231:322. https://doi.org/10.1007/s11270-020-04697-6.

Influence of setback distance on antibiotics and antibiotic resistance genes in runoff and soil following the land application of swine manure slurry - (Peer Reviewed Journal)
Gilley, J.E., Bartelt-Hunt, S.L., Snow, D.D., Schmidt, A.M., Eskridge, K.M., Li, X. 2020. Influence of setback distance on antibiotics and antibiotic resistance genes in runoff and soil following the land application of swine manure slurry. Journal of Environmental Science and Technology. 54(8):4800-4809. https://doi.org/10.1021/acs.est.9b04834.

Antibiotic resistance profiles in fallow soil receiving raw, composted or stockpiled beef manure, or inorganic fertilizer - (Abstract Only)

Swine slurry characteristics as affected by selected additives and disinfectants - (Peer Reviewed Journal)
Duerschner, J., Bartelt-Hunt, S.L., Eskridge, K.M., Gilley, J.E., Li, X., Schmidt, A.M. 2020. Swine slurry characteristics as affected by selected additives and disinfectants. Environmental Pollution. 260:114058. https://doi.org/10.1016/j.envpol.2020.114058.

Fate and transport of antibiotics and antibiotic resistance genes in runoff and soil as affected by timing of swine slurry application - (Peer Reviewed Journal)
Barrios, R.E., Bartelt-Hunt, S.L., Gilley, J.E., Schmidt, A.M., Snow, D.D., Li, X. 2020. Fate and transport of antibiotics and antibiotic resistance genes in runoff and soil as affected by timing of swine slurry application. Environmental Pollution. 712(10):136505. https://doi.org/10.1016/j.scitotenv.2020.136505.

Selected soil antibiotic resistance gene profile changes following manure application and rainfall - (Peer Reviewed Journal)
Meyers, M.A., Durso, L.M., Gilley, J.E., Waldrip, H., Castleberry, B., Millmier, S.A. 2020. Selected soil antibiotic resistance gene profile changes following manure application and rainfall. Environmental Quality. 49(3):754–761. https://doi.org/10.1002/jeq2.20060.

Microbial transformation of sulfonamide antibiotics under various background nutrient conditions - (Peer Reviewed Journal)
Levine, R.E., Zhang, Y., Leng, Y., Snow, D.D., Dassada, D., Durso, L.M., Li, X. 2019. Microbial transformation of sulfonamide antibiotics under various background nutrient conditions. Bulletin of Environmental Contamination and Toxicology. 103:808–813. https://doi.org/10.1007/s00128-019-02727-6.

Revisiting the oil fly bacteria from the la brea tarpits - (Abstract Only)

How can nitrogen budgeting estimate nitrate-N loading to groundwater? - (Popular Publication)
Miller, D.N., Snow, D.N., Krienke, B.T. 2019. How can nitrogen budgeting estimate nitrate-N loading to groundwater?. Popular publication.Institute of Agriculture and Natural Resources, Univeristy of Nebraska Water Column Newsletter. Available: https://water.unl.edu/article/groundwater/how-can-nitrogen-budgeting-estimate-nitrate-n-loading-groundwater

Research and development of microbiome-related alternatives to antibiotics - (Abstract Only)

One Health, the environment and antibiotic resistance: - (Abstract Only)

One health and antimicrobial resistance, a United States perspective - (Peer Reviewed Journal)
Bright-Pointe, S. A. Beaudoin, K. Bjork, K.L. Cook, L.M. Durso, J. Gilbert, C. Shivley, R. Singh, H. Tate, E.L. Thacker, B. Walters, J. Whichard. 2019. One Health and antimicrobial resistance, a United States perspective. Rev. Sci. Tech. Off. Int. Epiz 38:173-184. https://doi.org/10.20506/rst.38.1.2951.

Microbial transport as affected by residue cover and manure application rate - (Peer Reviewed Journal)
Durso, L.M., Gilley, J.E., Marx, D.B., Thayer, C.A., Woodbury, B.L. 2019. Microbial transport as affected by residue cover and manure application rate. Transactions of the ASABE. 62(3):687-694. https://doi.org/10.13031/trans.13277.

Environmental fate and microbial effects of monensin, lincomycin, and sulfamethazine residues in soil - (Peer Reviewed Journal)
D’Alessio, M., L. Durso, D. N. Miller, B. Woodbury, C. Ray and D. D. Snow. 2019. Environmental fate and microbial effects of monensin, lincomycin, and sulfamethazine residues in soil. Environmental Pollution 246:60-68. https://doi.org/10.1016/j.envpol.2018.11.093

Wheat strip effects on microbial transport following variable applications of beef cattle manure - (Peer Reviewed Journal)
Durso, L.M., Gilley, J.E., Marx, D., Thayer, C., Woodbury, B.L. 2019. Wheat strip effects on microbial transport following variable applications of beef cattle manure. Transactions of the ASABE. 62(2):263-270. https://doi.org/10.13031/trans.12940.

Narrow grass hedge effects on microbial transport following variable applications of beef cattle manure - (Peer Reviewed Journal)
Durso, L.M., Gilley, J.E., Marx, D.B., Woodbury, B.L. 2019. Narrow grass hedge effects on microbial transport following variable applications of beef cattle manure. Transactions of the ASABE. 62(1):149-156. https://doi.org/10.13031/trans.12892.

Lactate wastewater dark fermentation: The effect of temperature and initial pH on biohydrogen production and microbial community - (Peer Reviewed Journal)
Ziara, R.M., Miller, D.N., Subbiah, J., Dvorak, B.I. 2018. Lactate wastewater dark fermentation: The effect of temperature and initial pH on biohydrogen production and microbial community. International Journal of Hydrogen Energy. 44(2):661-673. https://doi.org/10.1016/j.ijhydene.2018.11.045.

Impact of vegetative treatment system on multiple measures of antibiotic resistance in agricultural wastewater - (Peer Reviewed Journal)
Durso, L.M., Miller, D.N., Henry, C.G. 2018. Impact of vegetative treatment system on multiple measures of antibiotic resistance in agricultural wastewater. International Journal of Environmental Research and Public Health. 15(6):1295. http://dx.doi.org/10.3390/ijerph15071295.

Tetracycline and sulfonamide antibiotic resistance genes in soils from Nebraska organic farming operations - (Peer Reviewed Journal)
Cadenas, M., Durso, L.M., Miller, D.N., Waldrip, H., Castleberry, B., Drijber, R.A., Wortman, C. 2018. Tetracycline and sulfonamide antibiotic resistance genes in soils from Nebraska organic farming operations. Frontiers in Microbiology. 9:1283.

Simulated winter incubation of soil and swine manure differentially affects multiple antimicrobial resistance elements - (Abstract Only)
Jurgens, M.E., Miller, D.N., Durso, L.M., Schmidt, A.M. 2018. Simulated winter incubation of soil and swine manure differentially affects multiple antimicrobial resistance elements. Meeting Abstract. 3rd Conference on Ecology of Soil Microorganisms. Paper No. 155 p. 153.

Surface detention on cropland, rangeland, and conservation reserve program areas - (Peer Reviewed Journal)
Gilley, J.E. 2018. Surface detention on cropland, rangeland, and conservation reserve program areas. Transactions of the ASABE. 61(3):955-966. https://doi.org/10.13031/trans.12569.

Antibiotic resistance in agroecosystems: A One Health perspective - (Peer Reviewed Journal)
Durso, L.M., Cook, K.L. 2018. Antibiotic resistance in agroecosystems: A One Health perspective. EcoHealth. 14:1-6.

Antimicrobial resistance and the environment: Assessment of advances, gaps and recommendations for agriculture, aquaculture and pharmaceutical manufacturing. - (Peer Reviewed Journal)
Topp, E., Larsson, D., Miller, D.N., Van Den Eede, C., Virta, M. 2018. Antimicrobial resistance and the environment: Assessment of advances, gaps and recommendations for agriculture, aquaculture and pharmaceutical manufacturing. FEMS Microbiology Ecology. 94:fix185.

Alkaline stabilization of manure slurry inactivates porcine epidemic diarrhea virus - (Peer Reviewed Journal)
Stevens, E.E., Miller, D.N., Brittenham, B.A., Vitosh-Sillman, S.J., Brodersen, B.W., Jin, V.L., Loy, J.D., Schmidt, A.M. 2018. Alkaline stabilization of manure slurry inactivates porcine epidemic diarrhea virus. Swine Health and Production. 26:95-100.

Tracking bacteria through the entire gastrointestinal tract of a beef steer - (Peer Reviewed Journal)
Durso, L.M., Miller, D.N., Schmidt, T.B, Callaway, T.R. 2017. Tracking bacteria through the entire gastrointestinal tract of a beef steer. Agricultural and Environmental Letters. 2:170016. doi:10.2134/ael2017.05.0016.

Antibiotic resistance genes and residual antimicrobials in cattle feedlot surface soil - (Abstract Only)

Antibiotic resistance genes and residual antimicrobials in cattle feedlot surface soil - (Abstract Only)
Bright, D., Miller, D.N., Durso, L.M., Spiehs, M.J., Woodbury, B.L., Snow, D., O'Connor, G. 2017. Antibiotic resistance genes and residual antimicrobials in cattle feedlot surface soil [abstract]. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance. Paper No. 82.

Sensitivity of soil microbial processes to livestock antimicrobials - (Proceedings)
Miller, D.N., Matteo, D., Snow, D. 2017. Sensitivity of soil microbial processes to livestock antimicrobials. Waste to Worth Conference. http://articles.extension.org:80/pages/74357/proceedings-from-waste-to-worth-2017.

Composting as a biosecure disposal method for PEDv-infected pig carcasses - (Proceedings)

Digester effluent’s agronomic and odor emission potential: A swine case study - (Proceedings)
Stowell, R., Miller, D.N., Powers, C. 2017. Digester effluent’s agronomic and odor emission potential: A swine case study. Waste to Worth Conference. Digester Effluent's Agronomic and Odor Emission Potential: A Swine Case Study.

Manure treatment and natural inactivation of porcine epidemic diarrhea virus in soils - (Proceedings)
Stevens, E., Schmidt, A., Miller, D.N., Loy, J., Jin, V.L. 2017. Manure treatment and natural inactivation of porcine epidemic diarrhea virus in soils. Waste to Worth Conference. Manure Treatment and Natural Inactivation of Porcine Epidemic Diarrhea Virus in Soils.