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United States Department of Agriculture

Agricultural Research Service

Animal Disease/Parasite Resistance
item Dataset of proinflammatory cytokine and cytokine receptor gene expression in rainbow trout (Oncorhynchus mykiss) measured using a novel GeXP multiplex, RT-PCR assay (Feb 2017)
item Expression of Marek's disease virus oncoprotein Meq during infection in the natural host (Feb 2017)
item Efficacy of an autophagy-targeted DNA vaccine against avian leukosis virus subgroup J (Feb 2017)
item NGS analysis identified differentially expressed coding and microRNA genes in ALV-like spontaneous tumors potentially contributing to tumorigenicity in susceptible chickens (Jan 2017)
item Differences in CD8 alpha alpha and cecal microbiome community during proliferation and late cytolytic phases of Marek's disease virus (MDV) infection are associated with genetic resistance to Marek's disease (Dec 2016)
item Differential expression of long non-coding RNAs in three genetic lines of rainbow trout (Oncorhynchus mykiss) in response to infection with Flavobacterium psychrophilum (Oct 2016)
item Proinflammatory cytokine and cytokine receptor gene expression kinetics following challenge with Flavobacterium psychrophilum in resistant and susceptible lines of rainbow trout (Oncorhynchus mykiss) (Oct 2016)
item Marek’s disease herpesvirus vaccines integrate into chicken host chromosomes yet lack a virus-host phenotype associated with oncogenic transformation (Oct 2016)
item GADD45ß, an anti-tumor gene, inhibits avian leukosis virus subgroup J replication in chickens (Sep 2016)
item Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe (Aug 2016)
item Validation of alternative transcript splicing in chicken lines that differ in genetic resistance to Marek’s disease (Aug 2016)
item Molecular epidemiology of J-subgroup avian leukosis virus isolated from meat-type chickens in South China between 2013 and 2014. (Aug 2016)
item Virulence of Flavobacterium columnare genomovars in rainbow trout Oncorhynchus mykiss (Aug 2016)
item Draft genome sequence of Lactococcus garvieae str. PAQ102015-99, an outbreak strain isolated from a commercial trout farm in the Northwestern United States. (Aug 2016)
item Metagenomic and near full-length 16S rRNA sequence data in support of the phylogenetic analysis of the rumen bacterial community in steers (Jul 2016)
item Isolation, identification and evolution analysis of a novel subgroup of avian leukosis virus isolated from a local Chinese yellow broiler in South China (Jul 2016)
item Transcriptional analyses of response to vaccines in two highly inbred lines of White Leghorns resistant or susceptible to Marek’s disease (Jul 2016)
item An outbreak of Plesimonus Shigelloides in Zebrafish (Jun 2016)
item Efficacy testing of a 35 year old commercially produced Yersinia ruckeri bacterin for the control of Enteric Redmouth ERM) Disease (Jun 2016)
item Virulence and molecular variation of Flavobacterium columnare affecting rainbow trout in ID, USA (Jun 2016)
item Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers (Jun 2016)
item Genetic diversity of Flavobacterium psychrophilum isolates from three Oncorhynchus spp. in the United States, as revealed by multilocus sequence typing (Jun 2016)
item In vitro characterization of felid herpesvirus 1 (FHV-1) mutants generated by recombineering in a recombinant BAC vector (May 2016)
item Molecular characterization, phylogeny analysis and pathogenicity of a Muscovy duck adenovirus strain isolated in China in 2014 (Mar 2016)
item VIRULENCE OF Flavobacterium columnare GENOMOVARS IN RAINBOW TROUT (Oncorhynchus mykiss) (Feb 2016)
item Genomewide association study of liver abscess in beef cattle (Feb 2016)
item Differential expression profiles of miRNAs induced by vaccination followed by Marek’s disease virus challenge at cytolytic stage in chickens resistant or susceptible to Marek’s disease (Jan 2016)
item The conservation and signatures of lincRNAs in Marek’s disease of chicken (Jan 2016)
item Yersinia ruckeri lipopolysaccharide is necessary and sufficient for eliciting a protective immune response in rainbow trout (Oncorhynchus mykiss, Walbaum) (Jan 2016)
item Genetic susceptibility to and presence of endogenous avian leukosis viruses impose no significant impact on survival days of chickens challenged with very virulent plus Marek's disease virus (Nov 2015)
item Exposure to pairs of Aeromonas strains enhances virulence in the Caenorhabditis elegans infection model (Nov 2015)
item A survey of polymorphisms detected from sequences of popular beef breeds (Nov 2015)
item Fine mapping of QTL and genomic prediction using allele-specific expression SNPs demonstrates that the complex trait of genetic resistance to Marek’s disease is predominantly determined by transcriptional regulation (Oct 2015)
item The conservation and signatures of lincRNAs in Marek’s disease of chicken (Oct 2015)
item Reproductive characteristics differed in a series of B-congenic lines of white leghorns evidently indicating significant influence of major histocompatibility complex in chickens (Sep 2015)
item Flagellar regulation in Yersinia ruckeri during infection (Sep 2015)
item Transcriptome variation in response to Marek’s disease virus acute infection (Jul 2015)
item Selective breeding improves rainbow trout resistance against bacterial cold water disease with little evidence for change in tolerance (Jun 2015)
item Historical overview and current status of genomic technology and marker assisted selection in beef cattle (Jun 2015)
item Histone modifications induced by MDV infection at early cytolytic and latency phases (Apr 2015)
item Intronic deletions of tva receptor gene decrease the susceptibility to infection by subgroup A avian sarcoma and leukosis virus subgroup A (Apr 2015)
item Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle (Apr 2015)
item Evaluation of single nucleotide polymorphisms in chromosomal regions impacting pregnancy status in cattle (Mar 2015)
item Genomewide association study of lung lesions in cattle using sample pooling (Mar 2015)
item The influence of major histocompatibility complex and vaccination with turkey herpesvirus on Marek's disease virus evolution (Mar 2015)
item Evaluation of reproductive characteristics of 21 highly inbred lines of White Leghorns divergently selected for or segregating in tumor resistance (Jan 2015)
item Vaccine induced differential expressions of miRNAs at cytolytic stage in chickens resistant or susceptible to Marek’s disease (Jan 2015)
item Prior genetic architecture impacting genomic regions under selection: An example using genomic selection in two poultry breeds (Jan 2015)
item AN MHC class I immune evasion gene of Marek's disease virus (Nov 2014)
item Deletion on chromosome 5 associated with decreased reproductive efficiency in female cattle (Nov 2014)
item Bioinformatic genome comparisons for taxonomic and phylogenic assignments using Aeromonas as a test case (Nov 2014)
item Temporal kinetics of Marek's disease herpesvirus: integration occurs early after infection in both B and T cells (Nov 2014)
item Marek’s Disease Virus influences the core gut microbiome of the chicken during the early and late phases of viral replication (Aug 2014)
item Filling the knowledge gap: Integrating quantitative genetics and genomics in graduate education and outreach (Aug 2014)
item Allele-Specific Expression Screening Demonstrates that Variation in Genetic Resistance to Marek’s Disease in Chicken is Mainly Controlled at the Transcriptional Level (Aug 2014)
item Single nucleotide polymorphism variants within tva and tvb receptor genes in Chinese chickens (Aug 2014)
item Systematic Differences in the Response of Genetic Variation to Pedigree and Genome Based Selection Methods (Jul 2014)
item Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle (Jul 2014)
item Influence of Marek’s disease virus on the core-gut microbiome of chickens resistant or susceptible to Marek’s disease (Jul 2014)
item Differential expression profiling of miRNAs between Marek’s disease resistant and susceptible chickens (Jul 2014)
item Genomic selection for genetic resistance to Marek's disease (Jul 2014)
item Characterizing a point mutation within the UL5 gene that reduces in vivo replication and MD incidence (Jul 2014)
item LincRNAs in CD4+ T cells and Marek’s disease (Jul 2014)
item Infection with Marek’s disease virus induces high levels of CD8a/a cells in chickens resistant to Marek’s disease (Jul 2014)
item Mapping and genotypic analysis of NK-lysin gene in chicken (Jul 2014)
item Evaluation of anthelmintic resistance of intestinal parasitic nematodes in heifers in south central Nebraska (Jul 2014)
item The cellular and molecular etiology of the craniofacial defects in the avian ciliopathic mutant talpid2 (Jul 2014)
item Genomewide association study of reproductive efficiency in female cattle (May 2014)
item gga-miR-375 plays a key role in tumorigenesis post subgroup J Avian Leukosis Virus infection (Apr 2014)
item Differential expression of Toll-like receptor pathway genes in chicken embryo fibroblasts from chickens resistant and susceptible to Marek’s disease (Feb 2014)
item Host genetic resistance to Marek’s disease sustains protective efficacy of herpesvirus of turkey in both experimental and commercial lines of chickens (Feb 2014)
item Preliminary analysis of microRNA transcriptome altered by vaccine and Marek’s disease virus in chickens (Jan 2014)
item Characterization of microbiomes related to respiratory disease in cattle (Jan 2014)
item Transcriptional profiling of Meq-dependent genes in Marek’s disease resistant and susceptible inbred chicken lines (Oct 2013)
item The Genetic Architecture of Genetic Resistance to Marek's Disease (Sep 2013)
item Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by the Marek's disease virus oncoprotein Meq (Jun 2013)
item Visualization of Marek’s disease virus in vitro using enhanced green fluorescent protein fused with US10 (May 2013)
item DNMT gene expression and methylome in Marek’s disease resistant and susceptible chickens prior to and following infection by MDV (Apr 2013)
item Deep sequencing of immune repertoires during bovine development and in response to respiratory pathogen challenge (Feb 2013)
item Does resistance to Marek’s disease select for specific gut microflora that play a role in influencing the host immune response (Feb 2013)
item DNA methylation down-regulates EGFR expression in chicken (Feb 2013)
item Identification of specific long noncoding RNA profiles in chicken with different susceptibility to Marek's disease (Jan 2013)
item Marek's Disease Virus Infection Induces Widespread Differential Chromatin Marks in Inbred Chicken Lines (Jan 2013)
item Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek's disease (Jan 2013)
item Identification of direct gene targets that the MDV oncoprotein Meq regulates via ChIP and expression analyses (Jan 2013)
item Host Genetics and Vaccine Efficacy: Global gene expression differentiation induced by vaccine and MDV in MD resistant and susceptible chickens based on Next-Gen RNA-Seq reads (Jan 2013)
item Complete genome assemblies and methylome characterization in infectious diseases (Jan 2013)
Last Modified: 8/13/2016
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