Skip to main content
ARS Home » Research » Manuscripts by Strategic Topical Areas

Animal Selection & Heterosis
item SNP panel development for genetic management of wild and domesticated white bass (Morone chrysops) (Nov 2019)
item Comparison of gene editing versus conventional breeding to introgress the POLLED allele into the US dairy cattle population (May 2019)
item Symposium review: Genetics, genome-wide association study, and genetic improvement of dairy fertility traits (Apr 2019)
item Genetic and epigenetic architecture of paternal origin contribute to gestation length in cattle (Mar 2019)
item The striped bass Morone saxatilis genome sequence assembly (Mar 2019)
item Minimizing fishmeal use in hybrid striped bass (Morone chrysops x Morone saxatilis) diets using commercial protein concentrates designed for aquafeeds (Mar 2019)
item Development and enhancement of white bass Morone chrysops resources for genetic improvement of hybrid striped bass (Mar 2019)
item Insights into the dynamics of memory, effector and apoptotic cytotoxic T Lymphocytes in channel catfish, Ictalurus punctatus (Mar 2019)
item Characterization of a third ghrelin receptor, GHS-R3a, in channel catfish reveals novel expression patterns and a high affinity for homologous ligand (Mar 2019)
item Modeling pedigree accuracy and uncertain parentage in single-step genomic evaluations of simulated and US Holstein datasets (Mar 2019)
item Modeling missing pedigree in single-step genomic BLUP (Mar 2019)
item Assessing the contribution of aquaculture and restoration to wild oyster populations in a Rhode Island Coastal Lagoon (Feb 2019)
item Genome changes due to artificial selection in U.S. Holstein cattle (Feb 2019)
item The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish (Jan 2019)
item Development of genomic predictions for harvest and carcass weight in channel catfish (Dec 2018)
item Disease at the interface of aquaculture and wild oyster reefs (Dec 2018)
item Fish mucus alters the Flavobacterium columnare biofilm transcriptome (Nov 2018)
item SNP panel development for genetic management of wild and domesticated white bass (Morone chrysops) (Nov 2018)
item SNP panel development for genetic management of wild and domesticated white bass (Morone chrysops) (Nov 2018)
item Genetic and nongenetic profiling of milk pregnancy-associated glycoproteins in Holstein cattle (Nov 2018)
item Development of SNP panels for population genetics analyses of domestic and wild white bass (Morone chrysops) (Oct 2018)
item Hormone preparation, dosage calculation, and injection technique for induced spawning of foodfish (Sep 2018)
item Simulation of introgression of the polled allele into the Jersey breed via conventional breeding versus gene editing (Sep 2018)
item Biotic and abiotic factors influencing channel catfish eggs and gut microbiome dynamics durning early life stages (Aug 2018)
item 10 years of revolution: Paul VanRaden looks at the evolution of genomics (Aug 2018)
item Efficacy of a live attenuated Edwardsiella ictaluri oral vaccine in channel and hybrid catfish (Aug 2018)
item Phytogenic feed-additive effects on channel catfish rhamnose binding lectin levels and susceptibility to Edwardsiella ictaluri (Jul 2018)
item Methods to compute reliabilities for genomic predictions of feed intake (Jun 2018)
item Lifetime Net Merit vs. annualized net present value as measures of profitability of selection (Jun 2018)
item Modelling uncertain paternity to address differential pedigree accuracy (Jun 2018)
item Genetic cues from fertilization to pregnancy establishment (Jun 2018)
item Multitrait modeling of first vs. later parities for US yield, somatic cell score, and fertility traits (Jun 2018)
item Genomic predictability of single-step GBLUP for production traits in US Holstein (Jun 2018)
item Big data genomic investigation of dairy fertility and related traits with imputed sequences of 24K Holstein bulls (Jun 2018)
item Potential benefits from using a new reference map in genomic prediction (Jun 2018)
item Identification of genomic regions associated with resistance to clinical mastitis in US Holstein cattle (Jun 2018)
item Effects of age and dose of Salmon GnRHa (OvaRH) on the reproductive performance of channel catfish, Ictalurus punctatus to produce channel catfish x blue catfish hybrid embryos in hatcheries (Jun 2018)
item Reducing dietary protein in pond production of hybrid striped bass - study shows a significant reduction is possible in digestible protein level in commercial diets (Jun 2018)
item Evaluating commercial, dietary pre-, pro- and synbiotics in hybrid catfish (Jun 2018)
item Net merit as a measure of lifetime profit: 2018 revision (May 2018)
item Comparison of channel catfish and blue catfish gut microbiota assemblages shows minimal effects of host genetics on microbial structure and inferred function (May 2018)
item The annotation of repetitive elements in the genome of channel catfish (Ictalurus punctatus) (May 2018)
item Draft genome sequence of fish pathogen Aeromonas bestiarum GA97-22 (May 2018)
item Genetic variation in anti-parasite behavior in oysters (Apr 2018)
item Coordinated effort to advance genomes-to-phenomes through the integration of bioinformatics with aquaculture research (Apr 2018)
item An edible corn zein-based coating incorporated with nisin or lemongrass essential oil inhibits listeria on cultured hybrid striped bass fillets during refrigerated and frozen storage (Apr 2018)
item DNA methylation profiles correlated to striped bass sperm fertility (Apr 2018)
item Effects of season, strain and body weight on testes development and quality in three strains of blue catfish, Ictalurus furcatus (Mar 2018)
item Hepatic gene expression analysis between low and high growing hybrid striped bass (Mar 2018)
item Heritability of growth traits and correlation with hepatic gene expression among hybrid striped bass exhibiting extremes in performance (Mar 2018)
item Reducing dietary protein in pond production of hybrid striped bass (Morone chrysops x M. saxatilis): Effects on fish performance and water quality dynamics (Mar 2018)
item Effect of supplemental taurine on juvenile channel catfish Ictalurus punctatus growth performance (Mar 2018)
item Cortisol responsiveness to stress in channel catfish influences susceptibility to Edwardsiella ictaluri (Mar 2018)
item Methods for discovering and validating relationships among genotyped animals (Feb 2018)
item Validating genomic reliabilities and gains from phenotypic updates (Feb 2018)
item Growth performance of Atlantic salmon (Salmo salar) smolts fed diets containing heterotrophic algal biomass as replacement of fish oil (Feb 2018)
item Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms (Feb 2018)
item Growth of Atlantic salmon (Salmo salar) fed squid and scallop processing byproduct hydrolysates incorporated into soy protein concentrate (spc)-diets (Feb 2018)
item Growth of Atlantic salmon (Salmo salar) fed squid and scallop processing byproduct hydrolysates incorporated into soy protein concentrate (SPC)-diets. (Feb 2018)
item Production of stocker-size hybrid tilapia in an outdoor biofloc production system (Feb 2018)
item Growth performance, survival, and processing characteristics of hybrid catfish fed pre And probiotics (Feb 2018)
item Assessment of hepatic gene expression between hybrid striped bass exhibiting extremes in growth performance (Feb 2018)
item Effect of post-spawning broodfish diet with high lipid content and n-3 fatty acids on reproductive performance of channel catfish (Feb 2018)
item Update to the Atlantic salmon breeding program at the National Cold Water Marine Aquaculture Center (Feb 2018)
item Evaluation of a portable electrosedation system (PES) for anaesthetizing channel catfish to produce channel x blue hybrid catfish embryos in hatcheries (Feb 2018)
item Characterization of two channel catfish, Ictalurus punctatus, glucocorticoid receptors and expression following an acute stressor (Feb 2018)
item Treatment of lumpfish (Cyclopterus lumpus L.) infected with Gyrodactylus cyclopteri (Scyborskaya 1948) (Jan 2018)
item Effect of stocking rate on growing juvenile sunshine bass in an outdoor biofloc production system: study shows potential to intensify production of sunshine bass fingerlings (Jan 2018)
item Atlantic salmon breeding program at the National Cold Water Marine Aquaculture Center (Jan 2018)
item GWAS and fine-mapping of 35 production, reproduction and conformation traits with imputed sequences of 27K Holstein bulls (Dec 2017)
item Effect of stocking rate on growing juvenile sunshine bass (Morone chrysops x M. saxatilis) in an outdoor biofloc production system (Dec 2017)
item Atlantic salmon and eastern oyster breeding programs at the National Cold Water Marine Aquaculture Center (Dec 2017)
item Approximating genomic reliabilities for national genomic evaluation (Nov 2017)
item Large-scale GWAS reveals reason for the DGAT1 significance and identifies new SNP effects in Holstein cattle (Nov 2017)
item Comparative phenotypic and genotypic analysis of Edwardsiella spp. isolates from different hosts and geographic origins, with an emphasis on isolates formerly classified as E. tarda and an evaluation of diagnostic methods (Oct 2017)
item White bass (Morone chrysops) preferentially retain n-3 PUFA in ova when fed prepared diets with varying FA content (Oct 2017)
item Efficacy of a live attenuated Edwardsiella ictaluri oral vaccine in channel and hybrid catfish (Aug 2017)
item Comparative analysis of the Flavobacterium columnare genomovar I and II genomes (Jul 2017)
item Effect of winter feeding frequency on growth, survival, and fatty acid metabolism of juvenile bluegill (Lepomis macrochirus) and hybrid bluegill (L.cyanellus ×L. macrochirus) (Jul 2017)
item Degree-days as a tool for use in producing tilapia fry for sex inversion (Jun 2017)
item Effect of dietary protein on hybrid tilapia production in a biofloc technology system (Jun 2017)
item Channel catfish production in a biofloc technology system (Jun 2017)
item Complete genome sequence of Edwardsiella ictaluri isolate RUSVM-1 recovered from nile tilapia (Oreochromis niloticus) in the Western Hemisphere (Jun 2017)
item Innate immune response of channel catfish (Ictalurus punctatus) mannose-binding lectin to channel catfish virus (Jun 2017)
item Hybrid striped bass National Breeding Program: Research towards genetic improvement of a non-model species (Jun 2017)
item Near infrared spectrometers determine stage maturity in channel catfish (May 2017)
item Starting up a lumpfish breeding program and those pesky opportunistic bacteria (Apr 2017)
item A transdisciplinary approach to the initial validation of a single cell protein as an alternative protein source for use in aquafeeds (Mar 2017)
item Selective breeding program for sea lice Lepeophtheirus salmonis (Kroyer 1838) at the USDA's National Cold Water Marine Aquaculture Center (Mar 2017)
item Effects of Season, Strain and Body Weight on Testes Development and Quality in Three Strains of Blue Catfish, Ictalurus furcatus (Mar 2017)
item Incubation water temperature and parental effects on the hatching success and progeny performance of Channel catfish (Feb 2017)
item The changing war on sea lice: the rise of non-drug based treatments (Feb 2017)
item Evaluation of black soldier fly (Hermetia illucens) larvae meal as partial or total replacement of marine fish meal in practical diets for Pacific white shrimp (Litopenaeus vannamei) (Feb 2017)
item Production of hybrid striped bass stockers in a biofloc system (Feb 2017)
item Effects of calcium and magnesium hardness on the fertilization and hatching success of hybrid catfish eggs (Feb 2017)
item Effects feeding zilpaterol hydrochloride on growth performance, fillet yeild, and body composition of rainbow trout, nile, tilapia, and channel catfish (Feb 2017)
item Evaluation of portable near infrared spectrophotometer to stage maturity in channel catfish (Feb 2017)
item Growth, survival, and fatty acid composition of coppernose bluegill (Lepomis macrochirus subspecies) offered different winter feeding regimes (Feb 2017)
item Comparative water quality and channel catfish production in earthen ponds and a biofloc technology production system (Feb 2017)
item Development of a 690K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence (Jan 2017)
item Scratching the surface: A sentinel exploration of sea louse infestations in Cobscook Bay, Maine (Jan 2017)
item Draft genome sequences of three Aeromonas hybrophila isolates from catfish and tilapia (Jan 2017)
item The genomic landscape of rapid, repeated evolutionary rescue from toxic pollution in wild fish (Dec 2016)
item Ontogenetic characterization of the intestinal microbiota of channel catfish through 16S rRNA gene sequencing reveals insights on temporal shifts and the influence of environmental microbes (Dec 2016)
item Complete genome sequence of Edwardsiella piscicida isolate S11-285 recovered from channel catfish (Ictalurus punctatus) in Mississippi, USA (Nov 2016)
item Atlantic salmon and eastern oyster breeding programs at the National Cold Water Marine Aquaculture Center (Nov 2016)
item Genetic basis for evolved tolerance to dioxin-like pollutants in wild atlantic killifish: more than the aryl hydrocarbon receptor (Oct 2016)
item Opportunistic bacterial infection in wild caught Lumpfish (Sep 2016)
item Effect of paternal blue catfish strain effects on hatchery fry production and performance of channel catfish X blue catfish F1 hybrid fry production and fingerling performance under commercial conditions (Aug 2016)
item Resolving misassembled cattle immune gene clusters with hierarchical, long read sequencing (Jul 2016)
item Draft genome sequences of four virulent aeromonas hydrophila strains from catfish aquaculture (Jul 2016)
item Myxobolus ictiobus n. sp. and Myxobolus minutus n. sp. (Cnidaria: Myxobolidae) from the gills of the smallmouth buffalo Ictiobus bubalus Rafinesque (Cypriniformes: Castostomidae) (Jul 2016)
item Developing a low cortisol responsive line of channel catfish, Ictalurus punctatus (Jun 2016)
item Growth and fatty acid composition of two strains of Arctic charr (Salvelinus alpinus) on diets formulated with low fish oil inclusion in a recirculating aquaculture system (Jun 2016)
item Use of ß-adrenergic agonists in hybrid catfish (Jun 2016)
item Performance of selected eastern oyster lines across northeastern US estuaries (Jun 2016)
item Successful production of Nile and blue tilapia fry - findings based on degree days and demonstrated for earthen ponds in subtropical climates (Jun 2016)
item The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts (Jun 2016)
item Development of multitissue microfluidic dynamic array for assessing changes in gene expression associated with channel catfish appetite, growth, metabolism, and intestinal health (Jun 2016)
item Draft genome sequence of Aeromonas hydrophila TN97-08 (May 2016)
item Genome sequence of the fish pathogen Flavobacterium columnare genomovar II strain 94-081 (May 2016)
item An integrated genetic linkage map and comparative genome analysis for the estuarine Atlantic killifish, Fundulus heteroclitus (Mar 2016)
item Low-intensity, stocker-based channel catfish culture (Mar 2016)
item A non-lethal means to identify spermiating D&B strain of blue catfish, Ictalurus furcatus (Mar 2016)
item Influence of fertilizing water pH on the hatching success of stripped channel catfish eggs on channel x blue hybrid catfish embryo production in hatcheries (Mar 2016)
item Biofloc production technology promising in temperate zones – Channel catfish perform during winter months (Mar 2016)
item Addition of a selective breeding program for resistance to sea lice Lepeophtheirus salmonis (Kroyer 1838) to existing lines of Atlantic Salmon, Salmo salar L., at the USDA's National Cold Water Marine Aquaculture Center (Feb 2016)
item Evaluation of growth, nutrient retention, health, and resistance to bacterial challenge in sunshine bass fed diets with new varieties of non-genetically modified soybeans (Feb 2016)
item The effect of different winter feeding regimes on growth and fatty acid composition of golden shiners and fathead minnows (Feb 2016)
item Beta-conglycinin and gut histology of sunshine bass fed diets with new varieties of non-GM soybeans (Feb 2016)
item Potency of blue catfish, Ictalurus furcatus (individual vs pooled) sperm to fertilize stripped channel catfish, I. punctatus eggs on the production and performance of progeny (Feb 2016)
item Stocking rate effects in a tilapia biofloc production system (Feb 2016)
item Influence of strain of sire on channel x blue F1 hybrid catfish embryo production and fingerling performance under commercial farm conditions. (Feb 2016)
item Use of distiller’s dried grains with solubles, which had been used as substrate for black soldier fly larvae, in diets for nile tilapia Oreochromis niloticus (Feb 2016)
item Complete genome sequence of Edwardsiella hoshinae ATCC 35051 (Feb 2016)
item Optimizing fish meal-free commercial diets for Nile Tilapia, Oreochromis niloticus (Nov 2015)
item Hybrid striped bass national breeding program: research towards genetic improvement of a non-model species (Nov 2015)
item Complete genome sequence of an Edwardsiella piscicida-like species recovered from tilapia in the United States (Sep 2015)
item Recent improvements in catfish hatcheries not only changed the type of catfish to be raised but also how they are raised (Aug 2015)
item Markers associated with disease resistance in Eastern oysters, Crassostrea virginica (Aug 2015)
item Characterization of phenotypic variation for dermo resistance among selectively-bred families of the Eastern oyster, Crassostrea virginica (Aug 2015)
item Dietary nutrients, additives, and fish health (Jul 2015)
item Minerals (Jul 2015)
item Complete genome sequence of Edwardsiella tarda (isolate FL95-01)recovered from channel catfish (Jun 2015)
item Hydrolysates from scallop and squid processing byproducts as specialty aquafeed ingredients (May 2015)
item The use of –omic tools in the study of disease processes in marine bivalves (May 2015)
item Developing tools for the study of molluscanimmunity: The sequencing of the genome of the eastern oyster, Crassostreavirginica (May 2015)
item Complete genome sequence of Aeromonas hydrophila AL06-06 (Apr 2015)
item Selection responses for caracass weight in four Atlantic Salmon year classes (Jan 2015)
item Potential use of the invasive European green crab (Carcinus maenas) as an ingredient in Atlantic Salmon (Salmo salar) diets; a preliminary analysis (Jan 2015)
item Salinity effects on Atlantic sturgeon growth and osmoregulation (Jun 2014)