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United States Department of Agriculture

Agricultural Research Service

Characterization/Evaluation/Utilization
item Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analysis analyses in of pooled RNA-Seq samples in rainbow trout (Aug 2017)
item Genome-wide association studies reveal similar genetic architecture with shared and unique QTL for Bacterial Cold Water Disease resistance in two rainbow trout (Oncorhynchus mykiss) breeding populations (Jul 2017)
item Functional Analysis of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture (Jun 2017)
item Innate immune response of channel catfish (Ictalurus punctatus) mannose-binding lectin to channel catfish virus (Jun 2017)
item 17ß-Estradiol increases non-CpG methylation in exon 1 of the rainbow trout (Oncorhynchus mykiss) MyoD gene (Jun 2017)
item Fatty acid partitioning varies across fillet regions during sexual maturation in female rainbow trout (Oncorhynchus mykiss) (Jun 2017)
item Denitrifying woodchip bioreactor and phosphorus filter pairing to minimize pollution swapping (May 2017)
item A fishmeal-free diet for post-smolt Atlantic salmon in RAS (May 2017)
item Transcriptome response to hormonal manipulation of follicle-enclosed oocytes in rainbow trout (Apr 2017)
item Starting up a lumpfish breeding program and those pesky opportunistic bacteria (Apr 2017)
item A transdisciplinary approach to the initial validation of a single cell protein as an alternative protein source for use in aquafeeds (Mar 2017)
item Enhancement of lake sturgeon conservation through feeding management (Mar 2017)
item Bovine trophectoderm cell lines induced from bovine fibroblasts with reprogramming factors (Mar 2017)
item Woodchip bioreactors effectively treat aquaculture effluent (Mar 2017)
item Performance and application of a fluidized bed limestone reactor designed for control of alkalinity, hardness and pH at the Warm Springs Regional Fisheries Center (Mar 2017)
item Production of germline ablated male pigs via Crispr/Cas editing of the NANOS2 gene (Mar 2017)
item Identification of peptidoglycan hydrolase constructs with synergistic staphylolytic activity in cow's milk (Mar 2017)
item Effect of supplemental taurine on juvenile channel catfish Ictalurus punctatus growth performance (Mar 2017)
item Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research (Feb 2017)
item The changing war on sea lice: the rise of non-drug based treatments (Feb 2017)
item Leucine and methionine deficiency induce catabolism through non-overlapping mechanisms in rainbow trout (Oncorhynchus mykiss) primary myoblasts (Feb 2017)
item Genetic line by environment interaction on rainbow trout growth and processing traits (Feb 2017)
item Targeted gene knock-in by CRISPR/Cas ribonucleoproteins in porcine zygotes (Feb 2017)
item Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture (Feb 2017)
item A new single-nucleotide polymorphisms database for rainbow trout generated through whole genome resequencing of selected samples (Jan 2017)
item Genome-wide association analysis of bacterial cold water disease resistance in rainbow trout reveals the potential of a hybrid approach between genomic selection and marker assisted selection (Jan 2017)
item Identification of commercial rainbow trout strains using a SNP panel (Jan 2017)
item Generation of germline ablated male pigs by CRISPR/Cas9 editing of the NANOS2 gene (Jan 2017)
item Short-term effects of genistein on gamete quality, steroidogenesis and histological changes in gonads in gibel carp, Carassius auratus gibelio (Jan 2017)
item The genomic landscape of rapid, repeated evolutionary rescue from toxic pollution in wild fish (Dec 2016)
item Ontogenetic characterization of the intestinal microbiota of channel catfish through 16S rRNA gene sequencing reveals insights on temporal shifts and the influence of environmental microbes (Dec 2016)
item Genome-wide association study for identifying loci that affect fillet yield, carcass, and body weight traits in rainbow trout (Oncorhynchus mykiss) (Nov 2016)
item Atlantic salmon and eastern oyster breeding programs at the National Cold Water Marine Aquaculture Center (Nov 2016)
item Assessing the impact of swimming exercise and the relative susceptibility of rainbow trout oncorhynchus mykiss (walbaum) and atlantic salmon salmo salar L. following injection challenge with weissella ceti (Nov 2016)
item Identification of mitochondrial genome-encoded small RNAs related to egg deterioration caused by postovulatory aging in rainbow trout (Oct 2016)
item Genetic basis for evolved tolerance to dioxin-like pollutants in wild Atlantic killifish: more than the aryl hydrocarbon receptor (Oct 2016)
item Woodchip bioreactors effectively treat aquaculture effluent (Oct 2016)
item Low head oxygenator performance characterization for marine recirculating aquaculture systems (Oct 2016)
item Aquaculture research at the Conservation Fund Freshwater Institute (Oct 2016)
item Assessment of genetic differentiation and genetic assignment of commercial rainbow trout strains using a SNP panel (Oct 2016)
item A review of factors influencing maturation of atlantic salmon salmo salar with focus on water recirculation aquaculture system environments (Oct 2016)
item Walleye Sander vitreus performance, water quality, and waste production in replicated recirculation aquaculture systems when feeding a low phosphorus diet without fishmeal versus a traditional fishmeal-based diet (Sep 2016)
item Opportunistic bacterial infection in wild caught Lumpfish (Sep 2016)
item Characterization of the endolysin from the Enterococcus faecalis bacteriophage VD13 (Sep 2016)
item Somatic cell nuclear transfer followed by CRIPSR/CAS9 microinjection results in highly efficient genome editing in cloned pigs (Sep 2016)
item Response to five generations of selection for growth performance traits in rainbow trout (Oncorhynchus mykiss) (Sep 2016)
item Denitrifying bioreactor clogging potential during wastewater treatment (Aug 2016)
item Getting proficient in RAS fundamentals - TCFFI trains aquaculture facility owners, operators and designers (Aug 2016)
item Survey of large circular and octagonal tanks operated at Norwegian commercial smolt and post-smolt sites (Jul 2016)
item Effects of incubation temperatures on embryonic and larval survival in rainbow trout, Oncorhynchus mykiss (Jul 2016)
item Effects of steroid treatment on growth, nutrient partitioning, and expression of genes related to growth and nutrient metabolism in adult triploid rainbow trout (Oncorhynchus mykiss) (Jul 2016)
item Specific Roles for 17ß-Estradiol versus Gonad Development in Nutrient Partitioning and Regulation of Nutrient- and Growth-Related Mechanisms During Sexual Maturation in Rainbow Trout (Jun 2016)
item Use of ß-adrenergic agonists in hybrid catfish (Jun 2016)
item Leucine and isoleucine reduce protein degradation in rainbow trout (Oncorhynchus mykiss) primary myoblast cultures (Jun 2016)
item Performance of selected eastern oyster lines across northeastern US estuaries (Jun 2016)
item Development of multitissue microfluidic dynamic array for assessing changes in gene expression associated with channel catfish appetite, growth, metabolism, and intestinal health (Jun 2016)
item Evaluation of a lysostaphin-fusion protein as a dry-cow therapy for Staphylococcus aureus mastitis in dairy cattle (Jun 2016)
item Evaluation of genome-enabled selection for bacterial cold water disease resistance using progeny performance data in Rainbow Trout: Insights on genotyping methods and genomic prediction models (May 2016)
item Targeted gene knockin in porcine somatic cells using CRISPR/Cas ribonucleoproteins (May 2016)
item Comparison of hydraulics and particle removal efficiencies in a mixed cell raceway and burrows pond rearing system (May 2016)
item Modeling and mitigation of denitrification 'woodchip' bioreactor phosphorus releases during treatment of aquaculture wastewater (May 2016)
item Effects of feeding a fishmeal-free versus a fishmeal-based diet on post-smolt Atlantic salmon salmo salar performance, water quality, and waste production in recirculation aquaculture systems (May 2016)
item Production of market-size North American strain Atlantic salmon Salmo salar in a land-based recirculation aquaculture system using freshwater (May 2016)
item The Atlantic salmon genome provides insights into rediploidization (May 2016)
item A chimeric LysK-lysostaphin fusion enzyme lysing Staphylococcus aureus cells: a study of both kinetics of inactivation and specifics of interaction with anionic polymers (May 2016)
item The influence of fishmeal-free diets on microbial communities in Atlantic salmon Salmo salar recirculation aquaculture systems (Apr 2016)
item A New and Improved Rainbow Trout (Oncorhynchus mykiss) Reference Genome Assembly (Apr 2016)
item Genomic selection for Bacterial Cold Water Disease resistance in rainbow trout (Apr 2016)
item Optimizing hydraulic retention times in denitrifying woodchip bioreactors treating recirculating aquaculture system wastewater (Apr 2016)
item Fishmeal-free Atlantic salmon feed formulation shows promise - Joint research between TCFFI, USDA and EWOS uses new diet for post-smolt to food-size fish (Apr 2016)
item An integrated genetic linkage map and comparative genome analysis for the estuarine Atlantic killifish, Fundulus heteroclitus (Mar 2016)
item Bottom-up GGM algorithm for constructing multiple layered hierarchical gene regulatory networks (Mar 2016)
item PlyC, a bacteriophage endolysin that is internalized by epithelial cells and retains bacteriolytic activity against intracellular streptococci (Mar 2016)
item Estradiol regulates expression of miRNAs associated with myogenesis in rainbow trout (Mar 2016)
item Addition of a selective breeding program for resistance to sea lice Lepeophtheirus salmonis (Kroyer 1838) to existing lines of Atlantic Salmon, Salmo salar L., at the USDA's National Cold Water Marine Aquaculture Center (Feb 2016)
item Identification of mitochondrial genome-encoded small RNAs related to egg quality deterioration caused by post-ovulatory aging in rainbow trout (Feb 2016)
item Changes in gene expression during follicle maturation in rainbow trout Oncorhynchus mykiss (Feb 2016)
item A panel of single nucleotide ploymorphism for parentage assignment in rainbow trout (Feb 2016)
item Identification and Functional Prediction of Large Intergenic Noncoding RNAs (lincRNAs) in Rainbow Trout (Oncorhynchus mykiss) (Feb 2016)
item Comparative economic performance and carbon footprint of two farming models for producing atlantic salmon (salmo salar): Land-based closed containment system in freshwater and open pen in seawater (Feb 2016)
item Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients (Jan 2016)
item Genomic Selection For Bacterial Cold Water Disease Resistance In Rainbow Trout Reveals Large Within-Family Variation That Cannot Be Exploited In Traditional Family-based Selective Breeding (Jan 2016)
item A new rainbow trout (Oncorhynchus mykiss) reference genome assembly (Jan 2016)
item Genome-wide association study for identifying genome loci that affect fillet yield in rainbow trout (Oncorhynchus mykiss) (Jan 2016)
item Role of long non-coding RNAs in bacterial cold water disease pathogenesis in rainbow trout (Jan 2016)
item Weighted ssGBLUP improves genomic selection accuracy for bacterial cold water disease resistance in a rainbow trout population (Jan 2016)
item Establishment and characterization of feeder-cell-dependent bovine fetal liver cell lines (Dec 2015)
item mRNA levels of imprinted genes in bovine in vivo oocytes, embryos and cross species comparisons in humans, mice and pigs (Dec 2015)
item Development and validation of a SNP panel for parentage assignment in rainbow trout (Nov 2015)
item Novel air-based system transfers large salmon during harvest (Nov 2015)
item Knockdown Brm and Baf170, components of chromatin remodeling complex, facilitates reprogramming of somatic cells (Oct 2015)
item Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout (Sep 2015)
item Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing (Sep 2015)
item Markers associated with disease resistance in Eastern oysters, Crassostrea virginica (Aug 2015)
item Characterization of phenotypic variation for dermo resistance among selectively-bred families of the Eastern oyster, Crassostrea virginica (Aug 2015)
item Nitrate removal effectiveness of fluidized sulfur-based autotrophic denitrification biofilters for recirculating aquaculture systems (Jul 2015)
item Crowder/grader units improve harvest efficiency in large circular tanks (Jul 2015)
item Generation of induced Pluripotent Stem Cells from Domestic Goats - Capra hircus (Jun 2015)
item Genomic selection for BCWD resistance in Rainbow trout using RADSNP and SNP genotyping platforms, single-step GBLUP and Bayesian variable selection models (Jun 2015)
item A high density genetic linkage map for rainbow trout (Onchorynchus mykiss) containing 47,839 SNPS (Jun 2015)
item A thermophilic phage endolysin fusion to a Clostridium perfringens-specific cell wall binding domain creates an anti-clostridium antimicrobial with improved thermostability (Jun 2015)
item A thermophilic phage endolysin fusion to a Clostridium perfringens-specific cell wall binding domain creates an anti-clostridium antimicrobial with improved thermostability (Jun 2015)
item Antimicrobial bacteriophage-derived proteins and therapeutic applications (Jun 2015)
item Bacteriophage phi11 lysin: physicochemical characterization and comparison with phage phi80a lysin (Jun 2015)
item Hydrolysates from scallop and squid processing byproducts as specialty aquafeed ingredients (May 2015)
item The use of –omic tools in the study of disease processes in marine bivalves (May 2015)
item Systemic granuloma observed in Atlantic salmon Salmo salar raised to market size in a freshwater recirculation aquaculture system (May 2015)
item Developing tools for the study of molluscanimmunity: The sequencing of the genome of the eastern oyster, Crassostreavirginica (May 2015)
item Emerging trends in salmonid RAS - Part II. System enhancements (May 2015)
item Magentic Cell labeling of primary and stem cell-derived pig hepatocytes for MRI-based cell tracking of heptocytes transplantation (Apr 2015)
item Reduced photoperiod (18 h light vs 24 h light) during first-year rearing associated with increased early male maturation in Atlantic salmon Salmo salar cultured in a freshwater recirculation aquaculture system (Mar 2015)
item Emerging trends In salmonid RAS - Part I. Closed-containment culture advances (Mar 2015)
item Gene expression profiling of MYC-driven tumor signatures in porcine liver stem cells by transcriptome sequencing (Feb 2015)
item Evolutionarily distinct bacteriophage endolysins featuring conserved peptidoglycan cleavage sites protect mice from MRSA infection (Jan 2015)
item Phage lytic proteins: biotechnological applications beyond clinical antimicrobials (Jan 2015)
item Selection responses for caracass weight in four Atlantic Salmon year classes (Jan 2015)
item Potential use of the invasive European green crab (Carcinus maenas) as an ingredient in Atlantic Salmon (Salmo salar) diets; a preliminary analysis (Jan 2015)
item Antibacterial and antibiofilm surfaces through Polydopamine-assisted immobilization of Lysostaphin as an antibacterial enzyme (Dec 2014)
item Lytic activity of the staphylolytic Twort phage endolysin CHAP domain is enhanced by the SH3b cell wall binding domain (Dec 2014)
item Heterotrophic denitrification of aquaculture effluent using fluidized sand biofilters (Nov 2014)
item Effects of alkalinity on ammonia removal, carbon dioxide stripping, and system pH in semi-commercial scale water recirculating aquaculture systems operated with moving bed bioreactors (Nov 2014)
item Intravitreal injection of a chimeric phage endolysin Ply187 protects mice from Staphylococcus aureus endophthalmitis (Jun 2014)
item An investigation of the structure and function of antistaphylococcal endolysins using kinetic methods (May 2014)
item Fish farming in land-based closed-containment systems (Mar 2014)
item New technology turns wastes into revenue at Indiana perch farm (Nov 2013)
item Physicochemical characterization of Staphylococcus aureus-lysing LysK enzyme in complexes with polycationic (Sep 2013)
item Undetectable bacterial resistance to phage lytic proteins from the Staphylococcus aureus bacteriophage vB_SauS-phiIPLA88 (May 2013)
item Bacteriophage-encoded lytic enzymes control growth of contaminating Lactobacillus found in fuel ethanol fermentations (Feb 2013)
Last Modified: 08/23/2017
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