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2007 Research Abstracts
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2005 and 2006 White Mold Fungicide Trials on Dry Beans in Michigan

G. Varner(1) and K.A. Terpstra(2)

ABSTRACT:  This study was undertaken to evaluate commercially available and experimental fungicides for control of white mold (Sclerotinia sclerotiorum) on dry beans (Phaseolus vulgaris) over a two year period. White mold is a serious, yield limiting disease of dry bean in the Midwest. Michigan dry bean producers can spend upwards of one million dollars annually on fungicides to control white mold. Evaluating fungicides provides growers with valuable information in determining the most effective fungicides to use. Similar fungicide trials have been conducted by the Michigan Dry Bean Production Research Advisory Board since 1982.

Treatments that included Endura, Omega, Formula A, both Switch treatments, and Topsin-M at 30 oz. out yielded the untreated check plot at a statistically significant level (p>0.05) in 2005. In 2006, only the Topsin M at 30 oz. and the Formulation A+B treatments out yielded the untreated check plot with statistical significance (p>0.05). White mold severity was much higher in 2005 than in 2006. In 2005, all treated plots except Proline showed a significant reduction in white mold incidence and severity as compared to the untreated check. In 2006, five treatments, including Proline, Formula A, and Formula B did not show a significant reduction in white mold incidence and severity as compared to the check. No phytotoxicity was observed with any treatments at either 2 or 10 days after fungicide application in either year.

Omega was consistently at or near the lowest disease incidence and severity of the fungicides tested and, along with both Topsin M treatments, showed a statistically significant decrease in incidence and severity in both years (p>0.05). Omega is not yet labeled for use in the United States on dry beans. Despite the superior performance of Endura, which is marketed as Lance in Canada, growers may remain reluctant to use Endura because of its relatively higher cost as compared to other available fungicides.

(1)Michigan Dry Bean Production Research Advisory Board, Saginaw, MI
(2)Department of Crop and Soil Sciences, MichiganStateUniversity, East Lansing, MI

CONTACT INFORMATION: Greg Varner, Michigan Dry Bean Production Research Advisory Board, 3066 South Thomas Road, Saginaw, MI48609, Phone: (989) 781-0260, e-mail:

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A Role for Induced Defense Pathways in Resistance to Sclerotinia sclerotiorum
Xiaomei Guo and Henrik Stotz, Oregon State University, Corvallis, OR

Funded Plan of Work: Genetic Basis of Oxalate Sensitivity in Relationship to Sclerotinia Diseases

Abstract: Genotypic differences in susceptibility to Sclerotinia sclerotiorum have not been reported because Arabidopsis thaliana is highly susceptible to this fungal pathogen. We have established conditions to evaluate differences in susceptibility to S. sclerotiorum among Arabidopsis mutants and ecotypes. Oxalic acid is an important virulence factor and we have confirmed differential susceptibility of Arabidopsis to oxalate-deficient and wildtype S. sclerotiorum. In order to identify genes involved in oxalate tolerance, a library of Saccharomyces cerevisiae deletion mutants was screened and RIB4, encoding the riboflavin biosynthetic enzyme lumazine synthase, was identified as one of the genes implicated in oxalate tolerance. COS1, the Arabidopsis ortholog of RIB4, is involved in jasmonic acid (JA) signaling. The cos1 mutant suppresses the coi1 mutation in an F-box protein which is a central regulator of JA responses. We, therefore, compared susceptibility to S. sclerotiorum and oxalate sensitivity in these mutant and wild type plants. Two coi1 mutant alleles conferred hyper-susceptible to S. sclerotiorum. JA signaling was disrupted because the plant defensin gene PDF1.2 was no longer induced after challenging coi1-2 mutants with S. sclerotiorum. Unlike the ?rib4 mutant, the coi1-2/cos1 mutant of Arabidopsis did not increase sensitivity to oxalic acid. Thus, JAinduced resistance is independent of oxalate tolerance. Encouraged by these results, we also tested mutants in salicylic acid (SA) and ethylene (ET) signaling. Both npr1 and ein2 mutants, which are defective in SA and ET signaling, respectively, are hypersusceptible to S. sclerotiorum. As expected, induction of PDF1.2 and the pathogenesisrelated gene PR1 was reduced in ein2 and npr1 mutants respectively, clearly demonstrating that S. sclerotiorum activates all three defense pathways in Arabidopsis. Actigard, a commercial formulation of the systemic acquired resistance (SAR) inducer benzothiadiazole, enhanced resistance to S. sclerotiorum. This result is in agreement with the npr1 mutant data and strongly suggests that SA contributes to resistance against S. sclerotiorum. Evidence was obtained for suppression of defense responses (H2O2 production and PR1 induction) by oxalic acid, but the effects were relatively small, suggesting that promotion of pectin degradation may perhaps play a more important role in virulence.

CONTACT INFORMATION:HenrikU. Stotz, Department of Horticulture, OregonStateUniversity, Corvallis, OR97331, 541-737-5468,

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Advancement of Pyramiding New Sclerotinia Stem Rot Resistant Genes from H.californicus and H. schweinitzii into Cultivated Sunflower
J. Feng(1), G. J. Seiler(2), T. J. Gulya(2), C. C. Jan(2

Funded Plan of Work: Development of Sclerotinia resistant germplasm utilizing wild Helianthus species

Abstract: Sclerotinia is a major disease in cultivated sunflower across the world and the presentday sunflower hybrids are considered lacking high resistance to Sclerotinia. In general, wild Helianthus species are known to possess a much wider genetic variability than that of the cultivated sunflower for Sclerotinia stem rot resistance. An abundance of wild Helianthus accessions have been evaluated as potential sources for Sclerotinia stem rot resistance with the perennial species having been found to be highly resistant, especially the higher ploidy level species. Interspecific hybridization of perennial hexaploid species H. californicus and H. schweinitzii with HA 410 were conducted in 2006 based on the BC1F1's obtained in 2005. In total, 109 BC1F1 plants were grown in the greenhouse for backcrossing. The backcross BC1F1 progenies were triploids with a 2n chromosome number of around 51. Because of the unbalanced chromosome number in the triploid BC1F1, the BC1F1 pollen fertility ranged from 2.45% to 4.63%, and seed set was very low. In total, 59 BC2F1 seeds were obtained from 136,220 pollinated florets. After germination, only 24 BC2F1 plants were established with a chromosome numbers of 2n=40 to 49, and a pollen stainablity of 34.2%. Based on these results, we are re-crossing the BC1F1 with HA 410 to produce more BC2F1 seeds to screen for resistance individuals. Our results clearly demonstrated that the major obstacle in interspecific gene transfer between hexaploid perennials and cultivated sunflower is the BC1F1 generation, with a chromosome number of 2n=51. We would strongly suggest using the embryo rescue technique to improve the establishment of the BC2F1 seedlings. Presently, we are crossing additional BC1F1 plants with HA 410 and culturing the BC2F1 embryos. We expect to produce a large population of BC2F1 progenies to provide a better foundation for further backcrosses as we approach the base 2n=34 chromosome of the recurrent parent HA 410. Identification of resistant progenies will be initiated as early as the BC3F1 or BC4F1 generation.

(1)North DakotaStateUniversity, Fargo, ND58105
(2)USDA-ARS, Northern Crop Science Laboratory, Fargo, ND58105

CONTACT INFORMATION: Dr. C. C. Jan, Sunflower Research Unit, Northern Crop Science Laboratory, P.O. Box 5677, State University Station, Fargo, ND58105; 701-239-1319;

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Advances in the Development of Sunflower Germplasm with Resistance to Both Sclerotinia Stalk Rot and Head Rot, and the Possible Role of Calcium in Sclerotinia Resistance - 2006
T. J. Gulya and J. F. Miller. Sunflower Research Unit, USDA-ARS Northern Crop Science Laboratory, Fargo, ND58105-5677

Funded Plan of Work: Development of Sunflower Germplasm with Resistance to Sclerotinia Stalk Rot and Head Rot

Abstract:Sclerotinia diseases remain the most significant of all diseases on both oilseed and confection sunflower production in the U.S. Sclerotinia incidence was lower in 2006 due to a widespread drought throughout much of the U.S. sunflower production area. Sclerotinia stalk rot and head rot affected 16% and 10% of the fields in ND and SD, respectively, and affected 0.9% and 0.3% of the crop in 2006. These figures are in stark contrast to previous years, such as 2002, when stalk rot and head rot were found in 29 and 50% of surveyed fields and affected a combined 7.4% of the crop. Several germplasm releases of both oilseed and confection sunflower were made, culminating several years of effort to incorporate both head rot and stalk rot resistance. Five oilseed restorer lines (RHA 439, 440, 453, 454, 455) and three maintainer oilseed lines (HA 441, 451, 452), along with 8 confection genetic stocks were released in 2006. The confection germplasm releases are the first material incorporating head rot resistance into longseeded confection types, which is the ideotype desired by private seed companies. Seventy-five commercial hybrids were evaluated at multiple, inoculated field sites for resistance to stalk rot, and the same material was tested by personnel of the Carrington, ND Research and ExtensionCenter for reaction to head rot. Stalk rot levels on the 75 hybrids ranged from 2% to 42% infected plants (averaged over 4 locations) while head rot ratings on the same hybrids ranged from 20 to 97% infected plants (averaged over two locations). Three hybrids were identified which combined high levels to both head rot and stalk rot. A check hybrid produced with USDA lines (HA 412 x RHA 409), which was the most resistant entry in the 2005 stalk rot trials, was exceeded in 2006 trials by 13 commercial hybrids, indicating private breeders are succeeding in incorporating stalk rot resistance. A preliminary study was begun in 2006 to investigate the levels of calcium in various plant parts among sunflower hybrids with known Sclerotinia resistance. If a correlation between calcium content and Sclerotinia resistance can be established, this inexpensive test could be used as a selection criterion to achieve higher levels of Sclerotinia resistance.

CONTACT INFORMATION: Dr. Tom Gulya, USDA Northern Crop Science Lab, 1307 N. 18th. St., FargoND58105-5677; 701-239-1316;

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Associations Between Ascospore Dispersal Gradients and Sclerotinia Stem Rot Incidence in Cando, North Dakota
Qandah, I. S., and L. E. del R?o. Department of PlantPathologyNorth DakotaStateUniversity, Fargo 58105 ND

Funded plan of work: Epidemiological studies on Sclerotinia stem rot of canola

Abstract: Seasonal and daily patterns of ascospore dispersal of Sclerotiniasclerotiorum, causal agent of Sclerotinia stem rot of canola (SSR), were studied in a canola field in Cando, N.D. during the month of July in 2005 and 2006. Viable S. sclerotiorum ascospores were collected on Petri plates containing the semi-selective Steadman's Blue medium at various distances from an area source of inoculum. The plates, placed two inches above the soil surface, were exposed for two hours between 10:00 A.M and 1:00 P.M., and then incubated at 21oC for two days before colonies were counted. Most ascospores were trapped when the air temperature and relative humidity under the plant canopies were 13- 21oC and >80%, respectively. A linear relationship was used to describe the relationship between the amount of ascospores trapped and the amount of diseased plant (R2= 0.994) in 2005. In 2006 the amount of ascospores trapped during the same period were less than 10% of what was observed in 2005, and SSR did not develop in the field. Inoculum concentration decreased with distance from the source (R2=0.977). A regression analysis between the weather variables prevalent in the 3 days prior to the detection of high peaks of ascospore concentrations in 2005 indicated a significant association (P= 0.023) between relative humidity and spore concentrations. The information generated by this study will be used as part of a disease-warning program for Sclerotinia stem rot of canola.

CONTACT INFORMATION: Dr. Luis del Rio, Department of Plant Pathology, 306 Walster Hall, North Dakota State University, Fargo, ND58105; 701-231-7073;

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Determining Species Identities of Sclerotinia Isolated from Chickpea in the U.S.
W. Chen (1), C. Frate (2), S.R.Temple (2), F.J Muehlbauer (1)

Funded Plan of Work: Sources of resistance to white mold in the grain legumes

Abstract: In order to identify sources of resistance to white mold in chickpea, we need to ascertain all genotypes and even different species of Sclerotinia that cause the disease on chickpea. During investigating chickpea white mold, we discovered isolates of Sclerotinia in central California that exhibited morphological features inconsistent with the previous known pathogen of chickpea. Experiments were carried out towards determining species identities of these isolates. Phenotypic and genetic diversity of Sclerotinia isolates collected from chickpea plants showing collar rot symptoms in central California were studied and compared with previously identified isolates of S. sclerotiorum to determine their species identities. Isolates exhibited two growth rates, fast growing (~40 mm diameter in 24 hours) and slow growing (~20 mm diameter in 24 hours). Fast growing isolates showed strong oxalic acid production as detected in a pH indicator medium, whereas slow growing isolates produced little or no oxalic acid on the same medium. PCR was used on representative isolates from each group to detect the presence of an intron near the 3'-end of small subunit rDNA. An intron was detected in the slow growing isolates, but not in the fast growing isolates. PCR with single long primers also produced DNA polymorphisms separating these two groups. The fast growing isolates shared the same attributes of previously identified isolates of S. sclerotiorum. The slow growing isolates showed the reported characteristics of S. trifoliorum. The species identity of these two groups is being tested and confirmed by inducing carpogenic germination of sclerotia.

(1) USDA-ARS, Grain Legume Genetics and Physiology Research Unit, Pullman, WA, (2) University of California-Davis.

CONTACT INFORMATION: Dr. Weidong Chen, USDA-ARS, Grain Legume Genetics and Physiology Research Unit, 303 Johnson Hall, Washington State University, Pullman, WA99164. 509-335-9178,

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Development of Sclerotinia Head Rot Resistant Germplasm Utilizing H. maximiliani and H. nuttallii
C. C. Jan(1), J. Feng(2), G. J. Seiler(1), K. Y. Rashid(3)

Funded Plan of Work: Development of Sclerotinia resistant germplasm utilizing wild Helianthus species

Abstract:Sclerotinia is the most damaging disease with an incidence higher than other major sunflower diseases. Wild Helianthus species have played an important role in establishing sunflower as an important global oilseed crop. However, the present day sunflower germplasm is still represented by a relatively narrow genetic base, which greatly limits its future success as a competitive major oilseed crop. Interspecific hybridization of NMS HA 89 with Sclerotinia head rot resistant wild diploid perennial H. maximiliani and H. nuttallii accessions was successful using embryo rescue. A total of 162 F1 hybrid plants were obtained after rescuing 228 embryos from 70,500 pollinated florets. Most F1 plants had the expected 2n chromosome number of 34. A few F1 hybrids had 2n=51 chromosome which was assumed to have resulted from fertilization of normal gametes with unreduced gametes. Most F1 plants with 2n=34 chromosome had low pollen stainablity of around 1%, and consequently low backcross seed set with only 85 seed from 506 pollinated heads. Backcrosses of 2n=34 F1 plants with HA 441 produced BC1F1 progeny with 2n=34 or 35 chromosome. Sib-pollination among heads with colchicine-induced chromosome doubling also had low seed set with 250 seeds from 425 pollinated heads. These sib-pollinated seeds produced amphiploids with 2n=62 to 68 chromosomes. Backcrossing of 2n=34 to 35 F1 plants with HA 441 is now in progress, as well as sib-pollination of the amphiploids for seed increase. The use of diploid perennial Helianthus accessions is expected to avoid the limitations of using higher ploidy Helianthus species or amphiploids by providing maximum genetic recombination in the F1 generation, minimizing target gene loss, and shorten the breeding time to obtain adequate seed for replicated field disease evaluation.

(1)USDA-ARS, Northern Crop Science Laboratory, Fargo, ND 58105
(2)North Dakota State University, Fargo, ND 58105
(3)Agric. & Agri-Food Canada, Morden, Manitoba, Canada

CONTACT INFORMATION: Dr. C. C. Jan, Sunflower Research Unit, Northern Crop Science Laboratory, P.O. Box 5677, State University Station, Fargo, ND58105; 701-239-1319;

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Dissecting Quantitative Trait Loci for Sclerotinia Head Rot Resistance in Sunflower
Bing Yue(1), Scott Radi(2), Jerry Miller(2), Brady Vick(2), Xiwen Cai(1), Thomas Gulya and Jinguo Hu(2)*

Funded Plan of Work: Map the quantitative trait loci responsible for Sclerotinia tolerance in USDA sunflower lines

Abstract: One hundred and twenty-three F2:3 families derived from a cross between HA 441 and RHA 439, both showing partial tolerance to Sclerotinia head rot, were used for the current study. A genetic map with 236 TRAP, 11 SSR, and 2 morphological markers was constructed in this F2 population with 123 individuals. The map has 18 linkage groups and spans 2328.3 cM. The F3 families (20-25 plants each) were planted in Carrington, ND, in a randomized complete block field design with two replicates. At flowering stage each head was inoculated with a suspension containing 5000 ascospores per milliliter and kept under mist irrigation for three weeks to create a microenvironment favorable for disease development. Five weeks after the inoculation, disease severity on individual heads was scored in a scale of 0 (no symptoms) through 5 (100% of head rotted). Disease tolerance was evaluated by disease incidence (DI) being calculated as the percentage of plants infected within a row and disease severity (DS) being measured by the mean disease score of the infected plants within each row. Six and seven QTLs were detected for DI and DS, respectively. These QTLs, each with a LOD score ranging from 2.1 to 18.1, were assigned to 10 of the 18 linkage groups. Although a positive correlation existed between the two disease indexes, the respective QTLs mapped to different chromosomal regions, suggesting a different genetic basis for the two indexes.

(1) Department of Plant Science, North Dakota State University, Fargo, ND 58105
(2) USDA-Agricultural Research Service, Northern Crop Science Laboratory, Fargo, ND 58105
*Corresponding author,

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CONTACT INFORMATION: Dr. Jinguo Hu, Sunflower Research Unit, USDA-ARS, NCSL, Fargo, ND, P. O. Box 5677, State University Station, Fargo, ND58105-5677; 701-239-1351;

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Estimates of Yield and Economic Losses Due to White Mold on Rain-fed Dry Bean in North Dakota
R. Harikrishnan, L. E. del R?o, and C. A. Bradley, Department of Plant Pathology, North DakotaStateUniversity, Fargo, ND58105

Abstract: White mold (Sclerotiniasclerotiorum) of dry bean is an endemic disease in North Dakota and is considered the most important biotic factor affecting yield. Potential yield and economic impact assessments due to white mold in rain-fed dry bean were made by conducting a survey of 250 fields during 2003 to 2005 growing season in the three predominant dry bean producing counties. Two methods were used to estimate yield loss due to white mold incidence. In method one, white mold incidence across fields within each county were averaged per year and regressed against estimated yield for each county per year to evaluate yield loss associated due to white mold incidence while in the second method, instead of using yearly yield estimate of each county, we used a 10-year average yield for each county. To arrive at economic loss assessments, yield loss due to white mold incidence was used in conjunction with average price and harvested area as reported by National Agricultural Statistics Service for North Dakota. Based on regression analysis, method one (R2 0.50; P = 0.03) resulted in a loss of 14 kg/ha for every unit of white mold incidence while method two (R2 0.54; P = 0.03) resulted in a loss of 15 kg/ha for every unit of white mold incidence in rain-fed dry bean. Over the three-year period and across both methods of evaluation, yield loss due to white mold incidence averaged 280 kg/ha (range 42 to 780 kg/ha) while economic loss averaged $3.75 million (range $0.40 to 13.0 million). Although using 10-year average yield resulted in slightly higher yield loss per unit of white mold incidence, both methods evaluated produced similar yield loss estimates.

CONTACT INFORMATION: Dr. Harikrishnan Ramasubramaniam, Dept. of Plant Pathology, North Dakota State Univ., 329 Walster Hall, Box 5012, Fargo, ND58105; 701-231-8051;

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Evaluation of Wild Helianthus Species for Resistance to Sclerotinia Stalk Rot
Charles C. Block, USDA-ARS, Ames, IA; Thomas J. Gulya, USDA-ARS, Fargo, ND and Laura F. Marek, North Central Regional Plant Introduction Station, Ames, IA

Funded Plan of Work: Evaluation of Wild Helianthus Species for Resistance to Sclerotinia Stalk Rot

Abstract: The ultimate goal of this project is to evaluate a broad range of wild Helianthus species for Sclerotinia stalk rot resistance. Wild sunflower germplasm is largely unexplored in terms of Sclerotinia stalk rot resistance, but wild Helianthus species are considerably more difficult to work with in field trials than cultivated sunflowers. Seed dormancy issues prevent direct seeding in the field, and thus seedlings need to be germinated, grown in the greenhouse, and later transplanted to the field. One of our objectives was to develop a reliable greenhouse screening method, so that susceptible material could be eliminated and only the most promising germplasm advanced to field trials. In growth chamber studies, incubation temperature was found to be the most important variable, as even modestly higher temperatures were detrimental to disease development. For example, at 21C, 100% of the plants of a susceptible variety wilted and died at an average of 11 days. At 25C, 40% of the plants had no symptoms, even after 21 days. Temperature was a more critical variable than pot size and shape, soil type, inoculum quantity, and inoculum placement in the pots.

Screening efforts will focus on annual diploid Helianthus species in the USDA sunflower germplasm collection, primarily the non-H. annuus taxa, such as H. anomalus, H. argophyllus, H. bolanderi, H. debilis (subspecies debilis, cucumerifolius, silvestris, tardiflorus and vestitus), H. deserticola, H. neglectus, H. niveus (subspecies canescens and tephrodes), H. petiolaris (subspecies fallax and petiolaris), H. porterii, and H. praecox (subspecies hirtus, praecox and runyonii). Our initial screening will focus on accessions known to have resistance to rust and/or downy mildew, as they offer the potential to pyramid resistance to several diseases. This will complement the emphasis in the USDA sunflower breeding program at Fargo, ND on developing germplasm with multiple desirable traits.

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CONTACT INFORMATION: Dr. Charles C. Block, USDA-ARS, G-212 Agronomy Bldg, IowaStateUniversity, Ames, IA50011; 515-294-4379;

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Genetics and Mapping of Resistance to Sclerotinia White Mold in Lentil
Fred Muehlbauer, Weidong Chen and Kevin McPhee Grain Legume Genetics and Physiology Research, USDA-ARS, 303 Johnson Hall, Washington State University, Pullman, WA 99164 -6434

Funded Plan of Work: Genetics and mapping of resistance to Sclerotinia white mold in lentil

Abstract: The objectives of the project were to determine genetic variation, identify resistance in lentil germplasm, develop genetically defined populations from crosses that segregate for Sclerotinia white mold (SWM) resistance, and map and tag the genes for resistance. Sclerotinia white mold evaluations of lentil varieties and germplasm successfully identified useful sources of resistance. Crosses were made between resistant and susceptible parents and the populations were advanced to F6 derived recombinant inbred lines (RILs) to form genetic mapping populations. The mapping populations have been used to develop a genetic map of codominant markers that will be used to determine the loci that determine Sclerotinia white mold resistance in lentil. The genetic map of lentil now has 11 linkage groups with 54 codominant markers and covers a genetic distance of 643cM. Comparison of the linkage map with previously published maps of lentil and pea indicate linkage groups 1, 2 and 3 share common markers with three linkage groups of the Hamweih lentil map and the Loridon pea map. Currently, additional microsatellite markers are being developed to increase marker density on the lentil map. The recombinant inbred lines have been increased in the greenhouse and field and phenotyping for SWM resistance will be initiated in the winter of 2007 in the greenhouse and field in spring of 2007. Lentil breeding lines are also being evaluated for resistance under controlled conditions in the greenhouse.

CONTACT INFORMATION: Dr. Fred Muehlbauer, Phone: 509-335-7647; FAX: 509-335-7692; e-mail: or Dr. Weidong Chen Phone: 509-335-9187; FAX: 509-335-7692; e-mail: USDA-ARS, Grain Legume Genetics and Physiology Research Unit, 303 Johnson Hall, Washington State University, Pullman, WA 99164.

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Genomic Analysis of Soybean Resistance to Sclerotiniasclerotiorum
Bernarda Calla, University of Illinois, Urbana, IL; Yunfang Zhang and Daina Simmonds, AgCanada, Ottawa, Ontario; Steven J. Clough, USDA-ARS and University of Illinois, Urbana, IL

Funded Plan of Work: Soybean genome response to Sclerotinia and oxalate, its major virulence factor

Abstract:Sclerotiniasclerotiorum is a necrotrophic fungal pathogen that infects soybean causing white mold disease. Oxalic acid is considered to be its major virulence factor. Plants from the oxalate oxidase (OxO) transgenic line (80(30)1) which showed resistance to the pathogen and its susceptible parent line (AC Colibri) were inoculated using infected flower buds. Samples of the leaflets were taken at two stages of the disease within 24 hours of inoculation. In a different experiment, fifteen-days-old soybean plants of a partially resistant variety (PI-194639) and a susceptible variety (Williams 82) were inoculated with actively growing mycelia utilizing the cut-stem technique and 1 inch sections were sampled at 8 and 14 hours post inoculation for microarray gene expression analysis. The data was obtained as the log2 of the normalized intensities for each gene and statistically analyzed using linear models in SAS. The genes with highest p-values (cutoff 0.05) for the difference between both varieties in the OxO experiment were assigned into functional categories and clustered using fuzzy-k-means. The results show that genes related to defense, oxidative stress and secondary metabolism are mostly down-regulated in the OxO transgenic compared to its parent. These preliminary results suggest that the susceptible line is actively trying to defend, whereas the transgenic is apparently depleting the oxalic acid levels at the beginning of the interaction minimizing the need for activation of defense genes. A cross comparison between the two experiments supports that the resistance in the OxO plants differs from that expressed in the stems of PI-194639.

CONTACT INFORMATION: Steven Clough, US Department of Agriculture and the University of Illinois Department of Crop Sciences. Urbana, IL; 217-265-6452;

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Identification of Quantitative Trait Loci Linked to White Mold Resistance in Common Bean
J.J. Maxwell, M.A. Brick, P.F. Byrne, H.F. Schwartz, X. Shan, J.B. Ogg, Colorado State University, Fort Collins, CO, & Robert Henson, North Dakota State Univ., Carrington Research and Extension Center, Carrington, ND

Funded Plan of Work: Variety Development/Germplasm Enhancement

Abstract: Genetic resistance to white mold has been reported in both common (Phaseolus vulgaris L.) and scarlet runner (P. coccineus L.) beans. From funding received from the USDA Sclerotinia Initiative during the past three years, we were able to (1) develop a RIL population derived from a cross between CO72548, an elite Colorado State University pinto line and resistant common bean line G122; (2) evaluate the utility of a previously reported QTL for white mold resistance derived from G122, and (3) identify additional QTL for resistance in the RIL population. The objectives for this year's research were to (1) quantify the effect of new QTL for resistance found in the RIL population, and (2) map resistant QTL via genome-wide composite interval mapping. The RIL population was evaluated for WM reaction in three greenhouse tests and one field environment and for molecular markers throughout the genome. Two RIL were identified with higher resistance levels (P<0.05) than the resistant parent G122 based on the straw test. The previously reported QTL (Miklas et al., 2001) on linkage group B7 was significant (P<0.01) in single-factor analysis of variance, but not with composite interval mapping. Five QTL with LOD>2.7 (on linkage groups B1, B2b, B8, and B9) were revealed through composite interval mapping for WM resistance in the greenhouse test. The QTL were contributed from both parents and together accounted for 48.4% of the phenotypic variation (R2). For field resistance to WM, one QTL (R2=12.4%) on linkage group B8 was detected. These results confirm polygenic resistance to WM in common bean and suggest that marker-assisted selection may be useful to enhance WM resistance in common bean germplasm.

CONTACT INFORMATION: Dr. Mark Brick, Dept. of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523-1170; 970-481-6551;

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Identification of Resistance to Sclerotinia sclerotiorum in Peas
Lyndon D. Porter, Gweynn Hoheisel, and Ginny Coffman, USDA-ARS, Prosser, WA

Funded Plan of Work: Screening of the Pisum core Collection and Woody-stem Selections for Resistance to White Mold.

Abstract: White mold, caused by Sclerotiniasclerotiorum, can be a serious disease in irrigated and dryland peas in the Pacific Northwest and is considered a serious potential threat to the expanding pea production in the Midwest of the United States. Due to poor economic returns to pea growers, expensive foliar fungicides used to manage white mold are cost prohibiting. Since there are currently no known sources of white mold resistance in peas, identifying resistant pea lines for breeding purposes is desired. Therefore, 498 pea accessions from the Pisum core collection located at the USDA-ARS, Regional Plant Introduction Station (RPIS), Pullman, WA and seven woody-stem pea lines from the John Kraft Germplasm Collection in Prosser, WA, were screened for resistance to white mold. Pea lines were inoculated with the white mold pathogen by applying a small agar plug removed from the leading edge of an expanding white mold colony growing on potato dextrose agar. The mini-agar plug was extracted using a dental amalgamator. Peas were inoculated with the mycelial plug at the 4th node immediately adjacent to the stem. The inoculated plants were then placed in a humidity chamber maintained at 20 to 25?C and 100% RH for three days. Of the pea lines screened, 5, 26, 77, 109, 91, and 197 accessions had lesion expansions between, 0 to 1, 1.1 to 2.0, 2.1 to 3.0, 3.1 to 4, 4.1 to 5, and >5 cm, respectively. Not a single Pisum lines was immune to the white mold isolate used to screen the pea lines. Of the 504 lines screened, 210 lines did not survive two weeks post-inoculation. Pea accessions with resistance to white mold based on the restriction of lesion expansion on the stem were identified.

CONTACT INFORMATION: Dr. Lyndon D. Porter, USDA-ARS, Vegetable and Forage Crops Research Unit, Prosser, WA99350; 509-786-9237;

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Influence of Crop Rotation and a Cover Crop on Sclerotinia in Canola
Paul Porter, Charla Hollingsworth, and Derek Crompton, University of Minnesota; Dave LeGare, Monsanto Company, Glyndon MN

Funded Plan of Work: Development of Sclerotinia Management Programs in Canola

Abstract: Two three-year field studies were initiated near Thief River Falls, MN in 2003 (03CRye) and 2004 (04CRye) to better understand the effect of crop rotation and a rye cover crop on growth and development of canola and wheat. In both 2005 and 2006 climatic conditions at flowering were not favorable for Sclerotinia development on canola, and infection was essentially non-existent. Attempts to monitor apothecia production from 'spiked' sclerotia were largely unsuccessful due to minimal apothecia counts.

Canola yields in the second year of the studies were reduced (15.5% in 03CRye and 10.7% in 04CRye), seed protein content was reduced (6.6 and 9.5%), seed oil content increased only in 04CRye (4.7%), and test weight was not influenced when rye was grown as a cover crop compared with no rye. Canola mid-season plant biomass and plant height at harvest were reduced when rye was grown in 03CRye, but were not influenced by the rye in 04CRye. Canola test weight, plant height, seed protein content, and sclerotinia disease incidence and severity were not influenced by whether the previous year's crop was wheat or canola. Canola yield was reduced 9.0% in 04CRye when following canola compared with wheat, but was not affected by previous crop in 03CRye.

Wheat yields in the second year of the studies were reduced (9.2% in 03CRye and 19.1% in 04CRye) when rye was grown as a cover crop compared with no rye, as were wheat test weights (0.5 and 1.6%), mid-season biomass (29.0 and 66.4%), and plant heights at harvest (4.5 and 8.9%). In 04CRye, wheat protein content and 1000 kernel weight were decreased (8.1 and 10.5%) when rye was grown, but this did not occur in 03CRye.

The presence of a rye cover crop prior to canola in the third year of the studies reduced canola yield by 30.6% in 03CRye and 9.1% in 04CRye, decreased seed protein content (9.2 and 7.2%), but increased seed oil content (5.6 and 3.1%) compared with no rye. The presence of canola prior to canola as compared with wheat prior to canola in the third year of the studies decreased canola yield by 31.0% in 03CRye and 9.2% in 04CRye. In 03CRye canola prior to canola increased protein 6.3% and decreased oil 4.9% compared with wheat prior to canola, but had no influence on protein or oil content in 04CRye.

These results document the negative influence of a rye cover crop preceding canola and wheat, as well as the importance of rotating wheat with canola. The influence of rye on the life cycle of Sclerotinia could not be assessed due to lack of disease development.

CONTACT INFORMATION: Dr. Paul Porter, Dept. of Agronomy and Plant Genetics, University of Minnesota, 411 Borlaug Hall, 1991 Buford Circle, St. Paul MN 55108; 612-625-6719;

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Integrated Pest Management of White Mold on Common Bean in Colorado and Idaho
Howard F. Schwartz, ColoradoStateUniversity, Shree P. Singh, University of Idaho, and Mark A. Brick, ColoradoStateUniversity

Funded Plan of Work: Cultivar, Plant Spacing and Fungicide Effects Upon White Mold Management in Dry Bean

Abstract: This 3-year project will investigate the importance of cultural practices (plant spacing), and timely application of multi-action pesticides in reducing damage from Sclerotiniasclerotiorum to Phaseolus vulgaris cultivars with varying levels of resistance (plant architectural-disease avoidance, within common bean and interspecific physiological resistance). Replicated field trials in white mold-infested and inoculated nurseries will investigate the importance and value of cultural practice modification (spacing of breeding lines with upright plant architecture or recently transferred interspecific sources of resistance) within an Integrated Pest Management context that compares cultivar, plant density and fungicide effects. The study will be conducted during 2006 to 2008 at one site each in Colorado (furrow irrigated) and Idaho (sprinkler irrigated).

During 2006, the Colorado experiment was adversely affected by drought conditions during flowering to pod fill stages of growth, and only a trace amount of white mold could be induced. Agronomic responses of treatments revealed that there was a noticeable increase in plot yield when plant population was increased 50% from 1 row to 2 rows. The % increase in yield when comparing 1 to 2 rows was 74%, 55% and 26% for Montrose, Vision and Matterhorn, respectively. With an average yield of 20 cwt/A (2240 kg/ha) and average grower price of $0.20/pound ($0.44/kg), the increased plant population (2 rows) could provide an addition return of 11 cwt valued at $220/A (1232 kg valued at $542/ha) for a upright Type II cultivar like Vision in the absence of white mold or if the cultivar was resistant to the white mold.

The Idaho experiment was planted later and avoided the effects of high temperatures during critical phases of flowering and pod set. Three inoculations with white mold were successful and fungicide treatments reduced infection by 50% or more for each cultivar and each plant population. White mold incidence in non-fungicide treated plots was comparable for all three cultivars and either population; Montrose, Vision and Matterhorn % disease intensity ratings with 1 and 2 rows were 94 and 99, 12 and 18, and 10 and 8, respectively. The Type II Vision - 2 lines had 18% white mold with no fungicide protection, but only 1.25% with fungicide. Assuming this modest disease control and associated yield gain with an upright, susceptible cultivar like Vision, 1 fungicide application, and 2 rows per bed, a grower could net an additional $190/A or $512/ha at a cost of $30/A or $74/ha for the fungicide application in the presence of white mold.

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CONTACT INFORMATION: Dr. Howard F. Schwartz, Dept. of Bioagricultural Sciences & Pest Management, ColoradoStateUniversity, C 205 Plant Science Bldg., Fort Collins, CO80523-1177; 970-491-6987;

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Introgressing White Mold Resistance from the Secondary Gene Pool of Common Bean
Shree P. Singh, University of Idaho, Kimberly, ID & Howard F. Schwartz, Colorado State University, Fort Collins, CO

Funded Plan of Work: Introgressing White Mold Resistance from the Secondary Gene Pool of common bean.

Abstract: White mold (WM) is a devastating disease of common bean. Only low levels of resistance occur in common bean. But, Phaseolus species of the secondary gene pool possess higher resistance. The goal is to introgress WM resistance from the three Phaseolus species of the secondary gene pool. The specific objectives are first, to pureline three interspecific breeding lines (IBL) derived from the congruity-backcross of 'ICA Pijao' with P. coccineus G 35172 and one each derived from the recurrentbackcross with P. costaricensis S 33720 and P. polyanthus G 35877. Second, determine the inheritance, and tag and map the WM resistance genes from the three Phaseolus species. Third, screen a new group of IBL derived from crosses of 'Othello' and 'UI 320' with highly WM resistant P. coccineus PI 433246 and PI 439534. Forty-seven IBL derived from the three Phaseolus species had survived selection in FY2006. The 47 IBL and susceptible and resistant checks were evaluated in FY2007. The greenhouse in Colorado and Idaho and field in Idaho were used. White mold pressure in all three environments was severe. Thus, five WM resistant IBL were selected. But, all were variable for WM reaction. Twenty-four WM resistant plants from each of the five IBL will be screened in the greenhouse in Colorado and Idaho and in the field in Idaho. The IBL with the highest WM resistance from each of the three Phaseolus species will be crossed with susceptible 'Grand Mesa'. The respective backcrosses and F2 will be produced for each set. These will be screened in the greenhouse in Colorado and Idaho and in the field in Idaho to determine inheritance of WM resistance. For tagging and mapping WM resistance genes and QTL, development of approximately 150 F5-derived F6 recombinant inbred lines (RIL) from each of the three single-crosses will be initiated for subsequent screening in the greenhouse in Colorado and Idaho and in the field in Idaho. Screening of the new set of 482 IBL derived from crosses of Othello and UI 320 with P. coccineus PI 433246 and PI 439534 will be initiated in the greenhouse and field. Subsequently, true-breeding IBL with the highest levels of WM resistance will be identified. Thus, higher levels of WM resistance will be available from all three Phaseolus species of the secondary gene pool to broaden the genetic base and combat WM problems nationwide. These IBL will be evaluated in the National Bean White Mold Nursery, used for development of resistant cultivars, and for further genetics and breeding studies. They will be used in Bean Field Days for growers, extension educators, researchers and other clientele, and results also disseminated through refereed papers, bulletins, news paper, TV, radio, electronically, and other means. One highly WM resistant germplasm line (A 195) was released and one refereed paper and one research note were published in FY2007. The PI presented an invited (all expenses paid) paper in the IV Phaseomics International Conference in Salta, Argentina.

CONTACT INFORMATION: Shree Singh, University of Idaho, Kimberly Research and ExtensionCenter, 3793N 3600E, Kimberly, ID83341-5076, Ph:208-423-6609, 

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Management Tools for White Mold Disease of Sunflower
S. Halley and R. Henson, deceased, North Dakota State University-Langdon and CarringtonResearchExtensionCenters, Langdon and Carrington, ND respectively, K. Rashid, AAFC, Mordent Research Station, Morden, ManitobaCanada, T. Gulya USDA, ARS, NCSL, Fargo, ND

Funded Plan of Work: Sunflower Head Rot Screening Nursery and Fungicide Evaluation

Abstract: Field trials were conducted in 2005 and 2006 to determine the resistance levels of several germplasms to Sclerotinia head rot. The lines tested were part of a larger set of germplasms previously evaluated at Carrington. The environment at Langdon was very conducive to the development of head rot in 2005 and less conducive in 2006. Differences in resistance were determined in both years. The resistant check was included with a group of lines that had the least amount of head rot and the susceptible check was included with a group of lines with the greatest amount of head rot in both years. These results and results from other centers conducting similar studies indicate that progress is being made identifying lines that will provide additional management tools to producers

to combat Sclerotinia head rot.
A second set of trials were conducted to evaluate fungicides for efficacy against Sclerotinia head rot and determine if yield could be increased with a fungicide application. The studies were conducted adjacent to the trials previously described. Nineteen fungicide and fungicide/adjuvant combinations applied at one or more application timings were evaluated for efficacy of head rot on a confection type cultivar in each year. Despite a range yield increases (nearly 600 lbs over the untreated) and disease incidences and severity reductions, no statistical differences were determined. Further study will be necessary to determine the most effective time to apply fungicide relative to the initial time of infection. The orientation of the face of the sunflower makes the application of fungicide to the face very difficult with standard spray equipment. Studies are needed to determine if application to the face will curb disease development or if application to other areas of the head are also necessary.

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CONTACT INFORMATION: Scott Halley, NDSU Langdon R/E Center, 9280 107th Ave NE, Langdon, North Dakota 58249 (701) 256-2582,

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Mapping and Transfer of Sclerotinia Resistance from Scarlet Runner to Common Bean
J. Erron Haggard and James R. Myers, Department of Horticulture, Oregon State University, Corvallis, OR

Funded plan of work: Mapping and Transfer of Sclerotinia Resistance from Scarlet Runner to Common Bean

Abstract: In 2006, we continued generation advance of four backcross inbred populations developed to analyze and incorporate high levels of white mold resistance from P. coccineus into P. vulgaris. The populations are: 91G/PI 255956, consisting of 115 BC2F7 lines; and 91G/PI 433251B, G122/PI 433251B, and MO162/PI433251B populations each
contain greater than 200 BC2F3 lines. The 91G/PI 255956 population was tested three times with the straw test, once with the oxalate test, once in the field as families in 2005 and once in the field as individual lines in 2006. Each straw test was read three times and area under the disease progress curve was calculated. While the straw tests and field trials are significantly correlated, the oxalate test results had no correlation to the others. This
supports the hypothesis that white mold response in this cross is conditioned by multiple factors, one of which may be oxalate tolerance. Mapping efforts to date have characterized 71 microsatellite markers in the 91G/PI255956 population. Most microsatellite markers have known position on the bean consensus map. While 71 markers are not enough to construct a substantial scaffold map, we have been able to identify some potential QTL through single marker analysis. Four markers map to B02 in a 20 cM region with significant effects in two or more tests. Twelve additional markers show a significant effect in one test with locations on B02, B03, B06, and B07. Four markers, with two also on LG B02, are associated with segregation for oxalate tolerance. These preliminary results need to be confirmed with interval mapping. Nevertheless, we are very interested in the fact that the location of some of the QTL found in our most recent mapping efforts may be in regions reported on other maps. In particular, the Bunsi/Newport and Bunsi/Raven maps revealed a QTL on B02 that maps to a similar region.

CONTACT INFORMATION: James R. Myers, Department of Horticulture, ALS 4017, OregonStateUniversity, Corvallis, OR97331; 541-737-3083;

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Pathogenicity and fluorescence of GFP transformed Sclerotiniasclerotiorum
Amal de Silva, Melvin D. Bolton and Berlin D. Nelson, Dept. Plant Pathology, North DakotaStateUniversity, Fargo, ND

Abstract:Sclerotiniasclerotiorum is an important pathogen of a wide variety of crops. To obtain a genetic marker to study the interaction of the pathogen with its hosts, isolates ND 21 and ND 30 were transformed using constructs pCT74 and gGFP both containing genes for the green fluorescent protein (gfp) and hygromycin B phosphotransferase. Protoplasts were generated and a protoplast-PEG (polyethylene glycol) transformation method was employed. Hygromycin resistant putative transformants appeared on the surface of the selection medium in 7 to 12 days. Seven transformants were selected for further study based on stability of the gfp gene and intensity of fluorescence. The sgfp gene was detected in these seven stable transformants using sgfp specific primers and Southern analysis detected a single copy of the sgfp gene in the genome. The pathogenicity of four ND 30 and three ND 21 transformants were evaluated on canola, dry bean, soybean, and sunflower by measuring the diameter of leaf lesions. On dry bean and soybean, ND 30 wild type had significantly higher lesion diameter compared to the transformants. However, on sunflower and canola one ND 30 transformant ND30-Y41 was as pathogenic as the wild type. Lesion formation by ND 21 wild type and the transformants was slower than ND 30. All ND 30 transformants were pathogenic on the four hosts, but pathogenicity of ND 21 transformants varied depending on the host. The fluorescence of these seven transformants was evaluated by directly examining the fluorescence of the mycelium and protein extractions from mycelium. Fluorescence of mycelium on agar plugs was quantified using a Synergy HT multi-detection microplate reader with an excitation wavelength of 485/20 nm and an emission wavelength of 528/20 nm. Fluorescence values of transformants ND30-41, ND30-Y41, ND21-17 and ND21-14 were significantly higher compared to the wild types. In addition, protein extracts from mycelium of ND30-43 and all transformants of ND 21 had higher fluorescence values compared to the wild types. Infected tissues were sectioned and examined on a Leitz Wetzlar epifluorescence microscope, or a Nikon E600 CARV Confocal cell imaging system, both equipped with filters for gfp excitation and emission. Hyphae of transformants fluoresced in host tissue and could be distinguished from the plant cells. These stable gfp transformants are useful tools for studying the biology of this important pathogen, especially when examining the interaction with plants or other microorganisms.

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CONTACT INFORMATION: Dr. Berlin Nelson, Dept. Plant Pathology, NDSU, Fargo, ND58105; 701-231-7057;

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QTL Underlying Tolerance to Sclerotinia Stalk Rot in a Sunflower Recombinant Inbred Line Population
Bing Yue(1,) Steve Knapp (2), Scott Radi (3) and Jinguo Hu(3)*

Funded Plan of Work: Map the quantitative trait loci responsible for Sclerotinia tolerance in USDA sunflower lines

Abstract: The stalk rot caused by Sclerotinia sclerotiorum (Lib.) de Bary is a serious disease of sunflower (Helianthus annuus L.) and cannot be effectively or economically controlled through the application of fungicides. The development of resistant inbred lines and hybrids has been an important goal of the seed industry; however, resistance is polygenic, the heritability of resistance is low, and immune germplasm has not been identified. Comparative mapping of quantitative trait loci (QTL) for resistance to Sclerotinia should facilitate the development of marker-assisted selection strategies for enhancing resistance. The goal of our study was to identify QTL for resistance to Sclerotinia in a recombinant inbred line (RIL) population developed from a cross between a completely susceptible confectionery inbred line (RHA280) and a moderately resistant oilseed inbred line (RHA801). RHA280 x RHA801 RILs (n = 91) were artificially inoculated using mycelium-bearing millet seeds in greenhouse and field (Fargo and Grandin, ND) trials in 2006. Using a scale from 0 (highly resistant) to 9 (susceptible), disease severities ranged from 1.7 to 8.3 among RILs in the greenhouse. Disease incidence was investigated in field tests in Fargo and Grandin, and it ranged from 0 to 27.5% in Fargo and from 0 to 52.5% in Grandin. Phenotypic correlations for RIL disease severity between tests were moderate (r = 0.21, 0.25, and 0.26) but significant (p = 0.01-0.04). We identified five QTL on four linkage groups with moderate additive effects (2.0 to -2.9 for disease incidence and 0.59 to -4.9 for disease severity). Individual QTL explained 11.3% to 26.3% of the phenotypic variability. Using the software of QTLMaper 1.60, six, three, and six digenic epistatic QTL were detected for stalk rot tolerance in the greenhouse trial and in the two field trials in Fargo and Grandin, respectively. Totally, the QTL explained 30.0% to 49.9% of phenotypic variability which is much larger than that explained by single locus QTL. Thus, it seemed that digenic epistasis was more important in controlling stalk rot tolerance in sunflower. Replicated tests of the RILs (n = 171) are planned for 2007 and should shed more light on the locations and effects of Sclerotinia stalk rot resistance QTL segregating in RHA280 x RHA801.

(1)Department of Plant Sciences, North DakotaStateUniversity, Fargo, ND58105, USA; (2) Center for Applied Genetic Technologies, The University of Georgia, 111 Riverbend Road, Athens, GA30602, USA;(3) USDA-Agricultural Research Service, Northern Crop Science Laboratory, 1307 North 18th Street, Fargo, ND58105, USA

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CONTACT INFORMATION: Dr. Jinguo Hu, Sunflower Research Unit, USDA-ARS, NCSL, Fargo, ND, P. O. Box 5677, State University Station, Fargo, ND 58105-5677; 701-239- 1351;

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Reaction to Oxalate of Selected Common Bean Lines
J. Erron Haggard and James R. Myers, Department of Horticulture, Oregon State University, Corvallis, OR

Funded plan of work: Mapping and Transfer of Sclerotinia Resistance from Scarlet Runner to Common Bean

Abstract: Oxalate is employed by Sclerotiniasclerotiorum to prepare host tissue for invasion by the fungus. This organic acid is a major factor in causing disease because when it is absent, Sclerotinia is only weakly pathogenic. Additionally, crop plants with an oxalate oxidase transgene are partially resistant to Sclerotinia. Oxalate has multiple effects on plant tissues. It lowers the pH of infected host tissues and increases the activity of polygalacturonase and other hydrolytic enzymes that destroy plant cells. Oxalate is also a strong chelator and able to remove calcium from pectin. Oxalate has also been shown to suppress the oxidative burst of host plants. It opens stomata ahead of mycelial growth, causing wilting and allowing mycelial invasion of the interior of plant organs. Certain genotypes of common bean and scarlet runner bean which have partial Sclerotinia resistance have been shown to be more tolerant of oxalate. However, most of the bean accessions with partial Sclerotinia resistance have never been characterized for oxalate tolerance, and it is not known whether oxalate tolerance is a common feature of Sclerotinia resistance. In the present study, lines selected for testing were those identified as possessing partial resistance to white mold, or had been used as parents in recombinant inbred populations used to identify QTL for white mold resistance. Thirtytwo bean accessions were grown in the greenhouse to produce cutting for the oxalate test. Cuttings with three to four nodes were arranged in a randomized complete block and were subjected to 20 mM oxalate (pH 4.0) for 12 h in the dark. Wilting was measured on a 10 point scale where 0 is no effect and 9 indicates complete collapse of the plant. The test was repeated three times. With a few exceptions, partially Sclerotinia resistant varieties were more tolerant of oxalate than susceptible varieties, and recombinant inbred parents were ranked as would be expected based on their disease resistance. The most oxalate tolerant accession was Cornell 605. Oxalate tolerance and white mold resistance do not appear to be absolutely correlated. For example, NY6020 sublines and OSU5630 have similar levels of oxalate tolerance, but differ in white mold susceptibility. Other lines with partial Sclerotinia resistance but that had very little oxalate tolerance included Ascher DR, and I9365-31. Our results suggest that factors other than oxalate tolerance may influence white mold resistance.

CONTACT INFORMATION: James R. Myers, Department of Horticulture, ALS 4017, OregonStateUniversity, Corvallis, OR97331; 541-737-3083;

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Sclerotinia Resistance Enhanced by Accumulation of QTL and Transgenic Approaches
George L. Graef, Thomas E. Clemente, James R. Steadman, TamraJacksonUniversity of Nebraska, Lincoln, NE

Funded Plan of Work:Sclerotinia resistance enhanced by accumulation of QTL and transgenic approaches.

Abstract: This project has two goals involving research on germplasm enhancement and variety development, including biotechnology. The first goal is to increase the level of resistance to Sclerotinia sclerotiorum in soybean. Objective 1 is to combine quantitative trait loci (QTL) that were previously mapped and identified with the resistance phenotype into single breeding lines. Three different populations were developed that combine resistance QTL from different sources. After screening over 4,000 plants through the F2, F3, and F4 generations we obtained F5-derived soybean lines that are homozygous for the desired marker alleles for the 8 QTL on 7 different linkage groups. During 2005, we identified 10 F4 families that had significantly smaller average lesion size compared with the most resistant parent in the cross. We identified 40 F5:6 lines with the smallest lesion size that were evaluated during 2006 for reaction to S. sclerotiorum in 12 replications of a lattice design using the detached leaf test (DLT). Nineteen of the lines had a lesion size equal to or smaller than the best parent in the cross, and better than the resistant check NKS19-90. The 19 selected F5:7 lines will be evaluated again during 2007 using the DLT, as well as in multi-location yield tests to evaluate agronomic characteristics. Objective 2 is to determine if a novel antifungal synthetic peptide expressed in soybean will confer resistance to S. sclerotiorum. We developed new transformed plants with a codon-optimized gene-expression cassette for the antifungal peptide that contains the barley alpha-amylase signal sequence to export the peptide to the apoplast. The T1 populations from seven independent transformation events containing the lytic peptide in the new codon-optimized gene expression cassette are growing in the greenhouse during winter fall/winter 2006-07. We will run the DLT on T2 populations during summer 2007. The second goal is to improve the use of calcium cyanamide as a control option for S. sclerotiorum. Our previous results indicate that the cah gene has no negative effects on yield in the transgenic lines vs. the non-transgenic control. Furthermore, Perlka application reduced germination of sclerotia and increased yield. It is unlikely, however, that the results for Sclerotinia reaction alone will be sufficient to justify regulatory approval expenses for a transgenic event. Perlka has been shown to affect other pathogens as well as nematodes, and it has herbicidal activity. These effects together could make an attractive disease management package for producers. Objective 1 is to evaluate effects of Perlka? (granular Ca-cyanamide) on soybean cyst nematode. Results from 6 replications at two locations during 2006 show no consistent yield trend. Nematode data are still being collected. The experiment will be repeated during 2007.

CONTACT INFORMATION: Dr. George L. Graef, Dept. of Agronomy and Horticulture, University of Nebraska, 319 Keim Hall, Lincoln, NE68583-0915; (402) 472-1537, 

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Sclerotinia Stem and Head Rot Resistant Germplasm Development Utilizing Interspecific Amphiploids
J. Feng(1), G. J. Seiler(2), T. J. Gulya(2), C. Li1, C. C. Jan(2)

Funded Plan of Work: Development of Sclerotinia resistant germplasm utilizing wild Helianthus species

Abstract: How to control Sclerotinia, a major fungal disease in cultivated sunflower, has always been a major concern for sunflower producers, breeders, and researchers. A considerable effort has been made to discover resistance genes in wild species and transfer them into the present-day hybrids, which are considered to possess insufficient resistance genes to Sclerotinia. Interspecific amphiploids of crosses between wild perennial Helianthus species and cultivated line P21 have been produced and used to provide resistant genes to a newly evolved race F of broomrape (Orobanche) in Spain. Similarly, these amphiploids, with their good backcross seed set, can quickly be utilized for pyramiding of Sclerotinia resistance genes, if they prove to be resistant. In 2005, seven interspecific amphiploids were evaluated at Fargo, ND, and all were found to be highly resistant to Sclerotinia stem rot compared to the tolerant check HA 410. In 2006, we repeated the evaluation of the same amphiploids for their resistance to Sclerotinia stem rot at Mapleton, ND, and head rot at Fargo, ND, using artificial inoculation in the field. Meanwhile, resistant amphiploid plants were crossed to stem rot tolerant HA 410 and head rot tolerant HA 441 for stem and head rot resistance gene pyramiding, respectively. Interspecific amphiploids have been confirmed as useful sources of resistance genes for both Sclerotinia stem rot and head rot based on our evaluation over two years, 2005 and 2006. The interspecific amphiploids include crosses of wild perennial Helianthus gracilentus, H. hirsutus, H. strumosus, H. grosseserratus, H. maximiliani, and H. nuttallii, crossed with P21, plus one intercrossed amphiploid involving H. divaricatus and H. grosseserratus. The result indicated that most amphiploids have better stem rot and head rot resistance than the tolerant check HA 410 and HA 441, respectively. The good F1 seed set between the amphiploids and HA 410 or HA 441 provided a sufficient number of plants for further backcrossing and chromosome reduction toward the 2n=34 chromosome number of cultivated sunflower. Based on our earlier success of transferring resistance genes from amphiploids for the broomrape resistance, we believe similar results can be achieved by using these amphiploids to develop sunflower germplasms superior to HA 410 and HA 441 for stem rot and head rot resistance, respectively.

(1)North DakotaStateUniversity, Fargo, ND58105
(2)Northern Crop Science Laboratory, USDA, Agricultural Research Service, Fargo, ND58105

CONTACT INFORMATION: Dr. C. C. Jan, Sunflower Research Unit, Northern Crop Science Laboratory, P.O. Box 5677, State University Station, Fargo, ND58105; 701-239-1319;

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Symbiotic Bacteria Associated with Sclerotinia sclerotiorum from Pea
Masato Kawabe and Tobin L. Peever, Department of Plant Pathology; Weidong Chen and Kevin McPhee, USDA-ARS, Washington State University, Pullman, WA99164.

Funded Plan of Work: Sequencing of expressed sequence tags of Sclerotinia sclerotiorum and Pisum sativum

Abstract: Research conducted in 2005-2006 focused on sequencing expressed sequence tags of Sclerotinia sclerotiorum strain WMA1 and Pisum sativum. Three cDNA libraries were generated from culture-grown mycelium on PDB and YPG and transformed into E. coli. Sequences from each of these EST libraries and most clones had similarity to bacterial sequences from Pseudomonas spp. despite no evidence for contamination of the growth medium. When the growth medium was changed to YPG, the ratio of sequences with similarity to bacterial genes relative to that of fungal sequences was reduced. This result suggests the presence of symbiotic bacteria in S. sclerotiorum strain WMA1. We attempted to detect the occurrence of bacteria in several S. sclerotiorum strains by PCR with bacteria-specific primers. Primers (63F and 1378R) were designed to bacterial 16S ribosomal DNA. This primer set amplified a fragment only from WMA1 and not from WMA1 and 1980 from pea and bean. Strain WMA1-5, obtained by sub-culturing WMA1 on gentamicin, and strain 1980, provided by Jeffrey Rollins, University of Florida, were bacteria-free based on PCR. Sequences of fragments amplified by the bacteria-specific primers had the greatest similarity to Ralstonia spp. These results suggest that strain WMA1 may harbor symbiotic bacteria which are absent from strain 1980 and subcultured strain WMA1-5. Additional experiments are being performed to verify the presence of bacteria including the use of the LIVE/DEAD Baclight bacterial viability (Molecular Probes) assay and fluorescent in situ hybridization with bacteria-specific probes.

CONTACT INFORMATION: Dr. Masato Kawabe, Department of Plant Pathology, WashingtonStateUniversity, Pullman, WA99164-6430; 509-335-3742;

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Unraveling Mechanisms Associated with Resistance: Soybean Stem Lignin Concentration and Susceptibility to Sclerotiniasclerotiorum
Angelique J. Peltier and Craig R. Grau, University of Wisconsin, Madison, WI

Funded plan of work: Unraveling the genetics of resistance in soybean to Sclerotinia sclerotiorum using multiple evaluation criteria.

Abstract: The goal of this project is to identify genetic resources using multiple evaluation criteria to develop soybean accessions that express complete and environmentally stable forms of resistance to Sclerotinia sclerotiorum (Ss). We propose to revise objectives based on research findings in year 1 of the project. Although preliminary results appeared promising, plant reaction to oxalic acid was found to be inconsistently correlated with interaction phenotypes observed in controlled and field environments. Oxalic acid, therefore, cannot be used to differentiate soybean accessions for reaction to Ss. Conversely, lignin content of stem and node tissues was correlated with interaction phenotypes among a set of soybean accessions inoculated with Ss in both controlled (rs = 0.83 - 0.94; P = 0.05 - 0.005) and field environments (rs = 0.90 - 0.94; P = 0.04 - 0.005). Specifically, lignin content of internode and node tissues was positively correlated with disease severity caused by Ss. W04-1002, a breeding line that has expressed a high level of partial and environmentally insensitive resistance, was found to have a lower lignin content compared to less resistant and susceptible soybean accessions. W04-1002 is considered a novel source of resistance to Ss. We propose to apply to the soybean and Ss system the concepts and methods used to study lignin in forage crops. In alfalfa, lignin is regarded as the most environmentally stable of measurable traits associated with forage feed quality. If the same is true for soybean, and the link between lignin concentration and reaction to Ss is confirmed, this method could have great value in evaluating plants for resistance in years not conducive for disease development. Although cell wall lignin concentration and disease severity were positively related, our data does not support a conclusion that lignin has a direct effect on the reaction of soybean to Ss. It does however, lead us to hypothesize that specific QTL confer resistance to Sclerotinia stem rot and are associated with low lignin content in internode and node tissues. We propose experiments designed to test these hypotheses A greater understanding of these traits will facilitate breeding for a superior form of resistance to Ss. In addition, a combination of assay methods that involve both quantification of stem lignin and plant reaction to S. sclerotiorum will facilitate the identification of new and superior sources of physiological resistance.

CONTACT INFORMATION: Dr. Craig Grau, Dept. of Plant Pathology, University of Wisconsin, 1630 Linden Dr., Madison, WI 53706; (608) 262-6289;

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Use of Yeast to Discover Mechanisms of Fungal Pathogen-Plant Interactions
Vicky Cheng, Henrik Stotz, Karen Hippchen, and Alan Bakalinsky, Oregon State University, Corvallis, OR

Funded Plan of Work: Genetic Basis of Oxalate Sensitivity in Relationship to Sclerotinia Diseases

Abstract: Oxalic acid is an important virulence factor produced by various phytopathogenic filamentous fungi, including Sclerotiniasclerotiorum. In order to better understand the specific effects of oxalic acid on plant cells, a Saccharomyces cerevisiae library consisting of 4,800 deletion mutants was screened for oxalate sensitivity. Our premise was that genes whose loss resulted in sensitivity normally provide protection in yeast, and that orthologs in Arabidopsis may provide similar protection, and thus, modulate the outcome of the fungal pathogen-plant interaction. A total of 105 mutants were identified, 25% of which were sensitive to oxalic acid concentrations as low as 1 ?M to 2 mM. Among the 28 mutants found to be highly sensitive to oxalic acid, four have deletions in genes whose homologs in filamentous fungi or plants are involved in host-microbe association. Significantly, none of these genes had previously been implicated in oxalateassociated plant diseases. Two of these genes, RIB4 and PTC1, encode lumazine synthase, an enzyme in the riboflavin biosynthetic pathway, and protein phosphatase 2C, respectively. The Arabidopsis homolog of RIB4 is COS1 which is involved in jasmonic acid signaling, a key mediator of plant defenses. ABI1 and ABI2 are Arabidopsis homologs of PTC1, which control abscisic acid signaling, transpiration, and interactions with S. sclerotiorum.

CONTACT INFORMATION:HenrikU. Stotz, Department of Horticulture, OregonStateUniversity, Corvallis, OR97331, 541-737-5468

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White Mold Resistance Identified in Multi-site Tests and Choice of Pathogen Isolates for Resistance Screening Matters
J.R. Steadman and L.K. Otto-Hanson Department of Plant Pathology - University of Nebraska-Lincoln

Funded Plan of Work: A search for improved resistance in common bean through multi-site screening and pathogen characterization.

Abstract: The project has two goals. The first is to identify white mold (WM) resistance in adapted common bean lines. Data from multi-site field tests in eight locations supported the separation of field resistance in ten lines with three of the lines exhibiting levels significantly higher than the resistant standard, G122. In greenhouse straw tests, nine lines exhibited resistance levels similar to G122. The field and greenhouse test data allowed us to identify WM 55 as having partial resistance similar to Bunsi, i.e. more escape/avoidance than resistance to the pathogen. The second goal is to determine if there is variability in the WM pathogen Sclerotiniasclerotiorum. The first objective under this goal uses mycelial compatibility grouping (MCG) as a method of determining clonality of isolates used to screen for WM resistance in the straw test. Six MCGs were identified; three MCGs of unique single isolates and three multiple isolate MCGs. The second objective is to determine differences in aggressiveness using the straw test. Straw test results were influenced by the host plant genotype used, e.g. Bunsi as the host resulted in higher overall mean ratings compared to use of G122 as the host. Also, the aggressiveness rankings differed depending on the host line used. There are significant differences between greenhouse screening isolates for aggressiveness and between MCGs and aggressiveness. Thus, choice of screening isolate may influence the separation of resistant and susceptible lines. Aggressiveness of the 155 field screening nursery isolates is not completed; however, MCGs for the 155 field isolates have been identified. The 155 isolates were highly variable with 64 MCGs, indicating many unique isolates, and only six MCGs had clonality between locations. The third objective involves use of microsatellites to determine isolate variability. Ten primer sets found to have the most informative polymorphisms when the ten greenhouse screening isolates were tested are currently being sequenced. After sequencing, five toseven of the most informative primer sets will be used to evaluate the 155 field screen isolates.

CONTACT INFORMATION: Dr. James R. Steadman, Dept. of Plant Pathology, Univ. Of Nebraska-Lincoln, 406 Plant Sciences Hall, Lincoln, NE68583-0722; 402/472-3163,,

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White Mold Resistance in Dry Bean Derived from P. vulgaris x P. coccineus
Phillip Miklas, USDA-ARS, Vegetable and Forage Crop Research Unit, Prosser, WA

Funded Plan of Work: Genetic characterization of scarlet-runner bean derived resistance to white mold in common bean

Abstract: Scarlet-runner bean (Phaseolus coccineus L.), a representative species of the secondary gene pool of common bean, is a potential source of white mold resistance for improving dry bean. I9365-31, I9365-25, and VA19 are dry bean lines that possess resistance to white mold putatively derived from scarlet-runner bean. The objective of this research was to characterize resistance of these lines to white mold in mapping populations tested across multiple field and greenhouse environments. Recombinant inbred populations consisting of F5-derived lines were developed from the crosses Raven/I9365-31, Montrose/I9365-25, and Benton/VA19. 'Raven' and 'Montrose' are commercial black and pinto bean, respectively, susceptible to white mold. 'Benton' is a susceptible snap bean. Separate R and S bulks for field and greenhouse reactions to white mold were used in bulked-segregant analyses to identify markers associated with resistance in the Raven/I9365-31 population. There were four independent quantitative trait loci (QTL) expressed across field environments, explaining from 9% to 24% of the phenotypic variation for disease score. Two major independent QTL conditioning resistance (22% to 37%) in the greenhouse were stably expressed across five separate straw tests. Integrating the QTL from this population on the core map has been difficult and is still in progress. Disease reaction for the Benton/VA19 population has been obtained from multiple field and greenhouse environments. Preliminary assay of the Benton and VA19 parents with SRAP markers indicate adequate polymorphism for mapping traits in the corresponding RIL population. The Montrose/I9365-25 population has been tested for disease reaction in only one field and one greenhouse environment, thus far. The narrow range for reaction to white mold observed among RILs suggests this population may not be suitable for mapping QTL conditioning resistance.

CONTACT INFORMATION: Dr. Phil Miklas, USDA-ARS, Vegetable and Forage Crop Research Unit, 24106 N. Bunn Road, Prosser, WA99350; 509-786-9258;

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White Mold Resistance in Pea and Lentil through Breeding and Biotechnology
Kevin McPhee, USDA-ARS, Pullman, WA; Weidong Chen, USDA-ARS, Pullman, WA; Blaine Schatz, North Dakota State University, Carrington, ND; Bob Henson, North Dakota State University, Carrington, ND and Fred Muehlbauer, USDA-ARS, Pullman, WA

Funded Plan of Work: Improved resistance to S. sclerotiorum in pea and lentil through breeding and biotechnology

Abstract: Two approaches to develop resistance to Sclerotiniasclerotiorum in pea and lentil have been initiated. The first approach involved screening 36 pea genotypes under field conditions at Carrington, ND and 24 and 12 genotypes of pea and lentil, respectively, at Pullman, WA. Research plots at Carrington consisted of seven rows spaced 18 cm apart and 7.6 m long and were arranged in a randomized complete block design with 4 replicates. During the flowering period, all plots at both locations were inoculated with ascospores. Immediately after inoculation a misting system was employed to maintain a humid environment to favor disease development. The misting system was run for 2-4 minutes every half hour, 24 hours/day, for 4 weeks. Disease was scored periodically and growth, development, and grain yield and quality data were recorded. Disease scores at Carrington in 2006 were not as severe as 2005 due to dry and unfavorable conditions. In 2005, statistically significant differences were observed in all parameters measured at Carrington except days to physiological maturity where disease progression did not allow accurate assessment of physiological maturity (and powdery mildew) in all plots. Several entries showed relatively high levels of susceptibility on the first evaluation date and on the final evaluation date, 'Arvika' (forage pea) and 'CDC Sonata' showed the lowest disease occurrence in 2005. In 2006, 'Admiral' (0.5) and 'Carneval' (1.0) had the lowest disease ratings and Arvika had a score of 2.8 compared to 3.8 in 2005. A highly significant negative correlation was observed between yield, days to beginning and end bloom and disease rating. Genotypes with the greatest level of resistance will be used to develop genetic mapping populations for inheritance studies. The second approach involved introducing the oxalate oxidase gene from barley (Hordeum vulgare L.) into pea and lentil through Agrobacterium tumefaciens-mediated transformation. The oxalate oxidase gene was successfully cloned from barley cDNA and incorporated into a twin binary vector. Two pea cultivars, 'Mukta' and 'Joel', and one lentil cultivar, 'Pardina', have been transformed and explants are currently on selection media. The twin binary vector will allow the selectable marker gene, nptII, to be separated from the oxalate oxidase gene through natural Mendelian segregation. This will be beneficial if deregulation of the transformants is pursued.

CONTACT INFORMATION: Kevin McPhee, USDA-ARS, P.O. Box 646434, Pullman, WA99164-6434; (509) 335-9522;


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Last Modified: 8/12/2016
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