Page Banner

United States Department of Agriculture

Agricultural Research Service

Philipp W Simon
Research Leader


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae) -
Arbizu, C.I., Ellison, S.L., Senalik, D., Simon, P.W., Spooner, D.M. 2016. Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae). BMC Evolutionary Biology. 16(1):234. doi: 10.1186/s12862-016-0806-x.
SHORT HYPOCOTYL 1 encodes a SMARCA3-like chromatin remodeling factor regulating elongation -
B0, K., Wang, H., Pan, Y., Behera, T.K., Pandey, S., Wen, C., Wang, Y., Simon, P.W., Li, Y., Chen, J., Weng, Y. 2016. SHORT HYPOCOTYL 1 encodes a SMARCA3-like chromatin remodeling factor regulating elongation. Plant Physiology. 172(2):1273-1292. doi: 10.1104/pp.16.00501.
Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States -
Mandel, J.R., Ramsey, A.J., Iorizzo, M., Simon, P.W. 2016. Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States. PLoS One. doi.org/10.1371/journal.pone.0161971.
Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry Reprint Icon -
Nowicka, A., Sliwinska, E., Grzebelus, D., Baranski, R., Simon, P.W., Nothnagel, T., Grzebelus, E. 2016. Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry. Scientific Horticulture. 209:132-138. doi: 10.1016/j.scienta.2016.06.023.
RNA Expression and Post-Transcriptional Editing Analyses of Cucumber Plastids Reveals Genetic Differences Associated with Chilling Tolerance -
Gordon, V.S., Staub, J.E., Willis, D.K., Simon, P.W. 2016. RNA Expression and Post-Transcriptional Editing Analyses of Cucumber Plastids Reveals Genetic Differences Associated with Chilling Tolerance . Journal of the American Society for Horticultural Science. Meeting Date.
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution Reprint Icon -
Iorizzo, M., Ellison, S., Senalik, D., Zeng, P., Satapoomin, P., Huang, J., Bowman, M., Iovene, M., Sanseverino, W., Cavagnaro, P., Yildiz, M., Spooner, D.M., Simon, P.W., et al. 2016. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution. Nature Genetics. 48(6):657-666. doi: 10.1038/ng.3565.
Genotyping-by-sequencing provides insights into the classification of the subspecies of Daucus carota -
Arbizu, C., Ellison, S., Senalik, D.A., Simon, P.W., Spooner, D.M. 2016. Genotyping-by-sequencing provides insights into the classification of the subspecies of Daucus carota [abstract]. Botany. Paper No. 348.
A complete plastid phylogeny of Daucus – concordance to nuclear results, and markers necessary for phylogenetic resolution -
Spooner, D.M., Ruess, H.M., Senalik, D.A., Simon, P.W. 2016. A complete plastid phylogeny of Daucus – concordance to nuclear results, and markers necessary for phylogenetic resolution [abstract]. Botany. Paper No. 119.
Integrated molecular and morphological studies of the Daucus guttatus complex (Apiaceae) Reprint Icon -
Arbizu, C.I., Simon, P.W., Martinez-Flores, F., Ruess, H., Crespo, M.B., Spooner, D.M. 2016. Integrated molecular and morphological studies of the Daucus guttatus complex (Apiaceae). Systematic Botany. 41(2):479-492. doi: 10.1600/036364416X691948.
Lectotype designation for seven species names in the Daucus guttatus complex (Apiaceae) from the central and eastern Mediterranean basin Reprint Icon -
Martinez-Flores, F., Arbizu, C.I., Reitsma, K., Juan, A., Simon, P.W., Spooner, D.M., Crespo, M.B. 2016. Lectotype designation for seven species names in the Daucus guttatus complex (Apiaceae) from the central and eastern Mediterranean basin. Systematic Botany. 41(2):464-478. doi: 10.1600/036364416X691849.
Recent advance in carrot genomics -
The CIOA (Carrot Improvement for Organic Agriculture) Project: Location, cropping system, and genetic background influence carrot performance including top height and flavor -
The next generation of carotenoid studies in carrot (Daucus carota L.) -
Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects Reprint Icon -
Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Simon, P.W., et al. 2015. Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects. Frontiers in Plant Science. 6:563. doi: 10.3389/fpls.2015.00563.
Identification and characterization of terpene synthases potentially involved in the formation of volatile terpenes in carrot (Daucus carota L.) roots Reprint Icon -
Yahyaa, M., Tholl, D., Cormier, G., Jensen, R., Simon, P.W., Ibdah, M. 2015. Identification and characterization of terpene synthases potentially involved in the formation of volatile terpenes in carrot (Daucus carota L.) roots. Journal of Agricultural and Food Chemistry. 63(19):4870-4878. doi: 10.1021/acs.jafc.5b00546.
Chilling tolerant U.S. processing cucumber (Cucumis sativus L.): three advanced backcross and ten inbred backcross lines -
Staub, J.E., Gordon, V.S., Simon, P.W., Wehner, T.C. 2015. Chilling tolerant U.S. processing cucumber (Cucumis sativus L.): three advanced backcross and ten inbred backcross lines. HortScience. 50:1252-1254.
Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber -
Weng, Y., Bo, K., Yang, L., Simon, P.W., Chen, J. 2015. Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber [abstract]. Plant and Animal Genome Conference. Paper No. P0932.
Vegetables of temperate climates: Carrot, parsnip and beetroot -
Tanumihardjo, S.A., Suri, D., Simon, P., Goldman, I.L. 2016. Vegetables of temperate climates: Carrot, parsnip and beetroot. In: Caballero, B., Finglas, P.M., Toldra, F., editors. Enclyclopedia of Food and Health. Volume 5. Waltham, MA:Academic Press. p. 387-392.
A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation Reprint Icon -
Cavagnaro, P.F., Iorizzo, M., Yildiz, M., Senalik, D.A., Parsons, J., Ellison, S., Simon, P.W. 2014. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation. Biomed Central (BMC) Genomics. 15:1118.
Integrated molecular and morphological studies of Daucus -
Arbizu, C., Ruess, H., Senalik, D., Simon, P., Reitsma, K., Spooner, D. 2015. Integrated molecular and morphological studies of Daucus [abstract]. Plant and Animal Genome Conference. Paper No. P1074.
Morphometrics of Daucus (Apiaceae): A counterpart to a phylogenomic study Reprint Icon -
Arbizu, C., Reitsma, K.R., Simon, P.W., Spooner, D.M. 2014. Morphometrics of Daucus (Apiaceae): A counterpart to a phylogenomic study. American Journal of Botany. 101(11):2005-2016.
Meloidogyne incognita nematode resistance QTL in carrot Reprint Icon -
Parsons, J., Matthews, W., Iorizzo, M., Roberts, P., Simon, P. 2015. Meloidogyne incognita nematode resistance QTL in carrot. Molecular Breeding. 35(5):114. doi: 10.1007/s11032-015-0309-2.
Development and validation of new SSR markers from expressed regions in the garlic genome Reprint Icon -
Ipek, M., Sahin, N., Ipek, A., Cansev, A., Simon, P.W. 2015. Development and validation of new SSR markers from expressed regions in the garlic genome. Scientia Horticulturae. 72(1):41-46.
Phylogenomics of the carrot genus (Daucus, Apiaceae) Reprint Icon -
Arbizu, C., Ruess, H., Senalik, D., Simon, P.W., Spooner, D.M. 2014. Phylogenomics of the carrot genus (Daucus, Apiaceae). American Journal of Botany. 101(10):1666-1685.
Integrated molecular and morphological studies of Daucus -
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2014. Integrated molecular and morphological studies of Daucus [abstract]. Botany. Paper No. 172.
Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker Reprint Icon -
Macko-Podgorni, A., Iorizzo, M., Smolka, K., Simon, P.W., Grzebelus, D. 2014. Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker. Acta Biochimica Polonica. 61(1):19-22.
Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall Reprint Icon -
Saude, C., Simon, P.W., McDonald, M.R. 2014. Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall. Plant Disease. 98(7):929-936.
First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae Reprint Icon -
Du Toit, L.J., Derie, M.L., Christianson, C.E., Hoagland, L., Simon, P.W. 2014. First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae . Plant Disease. 98(5):685.
Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus) Reprint Icon -
Schmaelzle, S., Gannon, B., Crawford, S., Arscott, S.A., Goltz, S., Palacios-Rojas, N., Pixley, K.V., Simon, P.W., Tanumihardjo, S.A. 2014. Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus). Journal of Agricultural and Food Chemistry. 62(1):136-143.
Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences Reprint Icon -
Simon, P.W. 2014. Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences. HortScience. 49(2):112-115.
Mechanisms of decreasing dysploidy in Cucumis -
Yang, L., Koo, D., Li, D., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Casacuberta, J., Senalik, D.A., Simon, P.W., Chen, J., Weng, Y. 2014. Mechanisms of decreasing dysploidy in Cucumis [abstract]. Plant and Animal Genome Conference. Paper No. W233.
Testing the utility of matK and ITS DNA regions for discrimination of Allium species Reprint Icon -
Ipek, M., Ipek, A., Simon, P.W. 2014. Testing the utility of matK and ITS DNA regions for discrimination of Allium species. Turkish Journal of Botany. 38(2):203-212.
Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot Reprint Icon -
Ali, A., Mathews, W.C., Cavagnaro, P.F., Iorizzo, M., Roberts, P.A., Simon, P.W. 2014. Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot. Journal of Heredity. 105(2):288-291.
Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers Reprint Icon -
Grzebelus, D., Iorizzo, M., Senalik, D.A., Ellison, S., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Nothnagel, T., Allender, C., Simon, P.W., Baranski, R. 2014. Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers . Molecular Breeding. 33(3):625-637.
Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene Reprint Icon -
Yahyaa, M., Bar, E., Dubey, N.K., Meir, A., Davidovich-Rikanati, J., Hirschberg, J., Ali, R., Tholl, D., Simon, P.W., Tadmor, Y., Lewinsohn, E., Ibdah, M. 2013. Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene. Journal of Agricultural and Food Chemistry. 61(50):12244-12252.
Fruit morphological descriptors as a tool for discrimination of Daucus L. germplasm Reprint Icon -
Mezghani, N., Zaouali, I., Bel Amri, W., Rouz, S., Simon, P.W., Hannachi, C., Ghrabi, Z., Neffati, M., Bouzbida, B., Spooner, D.M. 2014. Fruit morphological descriptors as a tool for discrimination of Daucus L. germplasm. Genetic Resources and Crop Evolution. 61(2):499-510.
Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis Reprint Icon -
Yang, L., Koo, D., Li, D., Zhang, T., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Senalik, D.A., Simon, P.W., Weng, Y., et al. 2014. Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis. Plant Journal. 77(1):16-30.
Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot Reprint Icon -
Bowman, M.J., Willis, D.K., Simon, P.W. 2014. Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot. Journal of the American Society for Horticultural Science. 139(1):63-68.
Daucus -
DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic Reprint Icon -
Macko-Podgorni, A., Nowicka, A., Grzebelus, E., Simon, P.W., Grzebelus, D. 2013. DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic. Genetica. 141(4-6):255-267.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus -
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. 36th International Carrot Conference. Paper. No. P16.
Taxonomy, distribution and germplasm collection needs of Daucus -
Spooner, D.M., Simon, P.W. 2013. Taxonomy, distribution and germplasm collection needs of Daucus [abstract]. International Carrot Conference. Paper No. 16.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus -
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. International Carrot Conference. Paper No. 17.
Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data -
Spooner, D.M., Widriechner, M.P., Reitsma, K.R., Palmquist, D.E., Simon, P.W. 2013. Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data [abstract]. International Carrot Conference. Paper No. 505.
Reassessment of practical subspecies identifications of the USDA Daucus carota L. germplasm collection: Morphological data Reprint Icon -
Spooner, D.M., Widrlechner, M.P., Reitsma, K., Palmquist, D.E., Rouz, S., Ghrabi-Gammar, Z., Neffati, M., Bouzbida, B., Ouabbou, H., El Koudrim, M., Simon, P.W. 2014. Reassessment of practical subspecies identifications of the USDA Daucus carota L. germplasm collection: Morphological data. Crop Science. 54(2):706-718.
Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project -
Simon, P.W., Navazio, J.P., Colley, M., Hoagland, L., Roberts, P.A., Du Toit, L., Waters, T., Silva, E., Colquhoun, J., Nunez, J., Mccluskey, C. 2013. Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project [abstract]. American Society for Horticultural Science. Paper No. 079.
Expression and mapping of anthocyanin biosynthesis genes in carrot Reprint Icon -
Yildiz, M., Willis, D.K., Cavagnaro, P.F., Iorizzo, M., Abak, K., Simon, P.W. 2013. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 126(7):1689-1702.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus -
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. Botanical Society of America Abstracts. Paper No. 895.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus L.) (Apiaceae) -
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P.F., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus L.) (Apiaceae) [abstract]. Botanical Society of America Abstracts. Paper No. 654.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus)(Apiaceae) Reprint Icon -
Iorizzo, M., Senalik, D.A., Ellison, S., Grzebelus, D., Cavagnaro, P., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae). American Journal of Botany. 100(5):930-938.
Molecular phylogeny of Daucus (Apiaceae) Reprint Icon -
Spooner, D.M., Srivistav, M., Rojas, P., Simon, P.W. 2013. Molecular phylogeny of Daucus (Apiaceae). Systematic Botany. 38(3):850-857.
Daucus for the flora of North America -
Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR Reprint Icon -
Bowman, M.J., Simon, P.W. 2013. Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR. Plant Molecular Biology Reporter. 31(4):1040-1047.
Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome Reprint Icon -
Iorizzo, M., Grzebelus, D., Senalik, D.A., Szklarczyk, M., Spooner, D.M., Simon, P.W. 2012. Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome. Mobile Genetic Elements. 2(6):261-266.
Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) -
Ellison, S.L., Iorizzo, M., Senalik, D.A., Simon, P.W. 2013. Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0698.
Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) -
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0762.
Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) -
Grzebelus, D., Baranski, R., Iorizzo, M., Senalik, D.A., Ellison, S.L., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Simon, P.W. 2013. Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0697.
Breeding and genomics of vegetable crops for climate-resilience traits -
Molecular mapping of vernalization requirement and fertility restoration genes in carrot Reprint Icon -
Alessandro, M.S., Galamarini, C.R., Iorizzo, M., Simon, P.W. 2013. Molecular mapping of vernalization requirement and fertility restoration genes in carrot. Theoretical and Applied Genetics. 126(2):415-423.
De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome Reprint Icon -
Simon, P.W., Iorizzo, M., Senalik, D.A., Szklarczyk, M., Grzebelus, D., Spooner, D.M. 2012. De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. Biomed Central (BMC) Plant Biology. 12:1-17.
Effect of UV-B light and genotype on antioxidant enhancement of carrot slices -
Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci -
Baransi, R., Maksylewicz-Kaul, A., Nothnagel, T., Cavagnaro, P., Simon, P.W., Grzebelus, D. 2011. Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci. Genetic Resources and Crop Evolution. 59(2):163-170.
In silico analysis of 454 data yields the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome -
Zalapa, J.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Polashock, J.J., Vorsa, N., Fajardo, D., Harbut, R., Zhu, H., Mccown, B., Zeldin, E. 2012. In silico analysis of 454 data yields the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome [abstract]. Plant and Animal Genome Conference. Paper No. P0047.
De novo assembly of the carrot mitochondrial genome -
Iorizzo, M., Simon, P.W., Senalik, D.A., Szklarczyk, M., Grzeblus, D. 2012. De novo assembly of the carrot mitochondrial genome [abstract]. Plant and Animal Genome Conference. Paper No. P0040.
Progress towards the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome -
Zalapa, J.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Polashock, J.J., Vorsa, N., Diego, F., Harbut, R., Zhu, H. 2011. Progress towards the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome [abstract]. Plant Sciences Symposium.
Using next generation sequencing approaches for the isolation of simple sequence repeats (SSF) in the plant sciences -
Zalapa, J.E., Cuevas, H.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Zhu, H., Mccown, B., Zeldin, E., Harbut, R. 2012. Using next generation sequencing approaches for the isolation of simple sequence repeats (SSR) in the plant sciences. American Journal of Botany. 99(2):193-208.
Daucus -
Grzebelus, D., Baranski, R., Spalik, K., Allender, C., Simon, P.W. 2011. Daucus. In: Kole, C., editor, Wild Crop Relatives: Genomic and Breeding Resources. New York, NY:Springer. p. 91-113.
Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.) -
Zalapa, J.E., Simon, P.W., Hummer, K.E., Bassil, N.V., Senalik, D.A., Zhu, H., Mccown, B.H., Zeldin, E., Speers, J., Hyman, J. 2012. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). Theoretical and Applied Genetics. 124(1):87-96.
Allocation of experimental resources to minimize the variance of genotype mean chip color and tuber composition -
Mccann, L.C., Bethke, P.C., Casler, M.D., Simon, P.W. 2011. Allocation of experimental resources to minimize the variance of genotype mean chip color and tuber composition. Crop Science. 52(4):1475-1481.
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity -
Iorizzo, M., Senalik, D.A., Grzebelus, D., Bowman, M., Cavagnaro, P.F., Matvienko, M., Ashrafi, H., Van Deynze, A., Simon, P.W. 2011. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. Biomed Central (BMC) Genomics. 12:389.
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae -
Cavagnaro, P.F., Chung, S., Manin, S., Yildiz, M., Ali, A., Alessandro, M.S., Iorizzo, M., Senalik, D.A., Simon, P.W. 2011. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae. Biomed Central (BMC) Genomics. 12:386.
Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp -
Bo, K., Song, H., Shen, J., Qian, C., Staub, J.E., Simon, P.W., Lou, Q., Chen, J. 2011. Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp. Molecular Breeding. 30(1):335-344.
USDA, ARS EOM 402-10 high B-carotene cucumber -
Staub, J.E., Simon, P.W., Cuevas, H.E. 2011. USDA, ARS EOM 402-10 high B-carotene cucumber. HortScience. 46:1426-1427.
Comparative FISH mapping of Daucus species (Apiaceae family) -
Iovene, M., Cavagnaro, P.F., Simon, P.W., Senalik, D.A., Buell, C.R., Jiang, J. 2011. Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Research. 19:493-506.
Molecular markers: are they really useful to detect genetic variability in local garlic collections? -
Garcia Lampasona, S., Burba, J.L., Simon, P.W. 2010. Molecular markers: are they really useful to detect genetic variability in local garlic collections? The Americas Journal of Plant Science and Biotechnology. 4(SI1):104-112.
Genomics and genetic improvement of carrot pigments -
Simon, P.W. 2011. Genomics and genetic improvement of carrot pigments [abstract]. Plant and Animal Genome Conference. W409.
The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae -
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philge, P., Senapathy, P. 2011. The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae [abstract]. Plant and Animal Genome Conference. P. 811.
Development of EST based markers for exploiting the carrot genome -
Iorizzo, M., Bowman, M., Simon, P.W., Cavagnaro, P., Senalik, D.A., Carputo, D., Van Deynze, A. 2011. Development of EST based markers for exploiting the carrot genome [abstract]. Plant and Animal Genome Conference. p. 175.
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.) -
Cavagnaro, P.F., Weng, Y., Senalik, D.A., Simon, P.W., Harkins, T.T., Huang, S. 2010. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). Biomed Central (BMC) Genomics. 11:569-588.
Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.) -
Cavagnari, P.F., Weng, Y., Senalik, D.A., Yang, L., Simon, P.W., Harkins, T.T., Kodira, C.D., Huang, S. 2010. Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.). Biomed Central (BMC) Genomics. Available: http://www.biomedcentral.com/1471-2164/11/569.
RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae -
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philip, P., Senapathy, P. 2010. RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae. Biomed Central (BMC) Plant Biology. 10:161.
New carrot and garlic germplasm to advance breeding and understand crop origins -
Simon, P.W. 2010. New carrot and garlic germplasm to advance breeding and understand crop origins [abstract]. American Society of Horticulture Science Meeting. p. 11.
Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm -
Mccann, L.C., Bethke, P.C., Simon, P.W. 2010. Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm. Journal of Agriculture and Food Chemistry. 58(4):2368-2376.
Quantification of the Ratio of Plastid to Chromosomal Genome in Leaf and Root Tissue of Carrot (Daucus Carota) Using Real Time Quantitative PCR -
Bowman, M.J., Willis, D.K., Simon, P.W. 2010. Quantification of the Ratio of Plastid to Chromosomal Genome in Leaf and Root Tissue of Carrot (Daucus Carota) Using Real Time Quantitative PCR [abstract]. Plant and Animal Genome Conference. p. 114.
Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis -
Cavagnaro, P., Weng, Y., Senalik, D.A., Harkins, T.T., Kodira, C.D., Simon, P.W., Huang, S. 2010. Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis [abstract]. Plant and Animal Genome Conference. p. 135.
Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers -
Acharya, L., Simon, P.W. 2010. Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers [abstract]. Plant and Animal Genome Conference. p. 124.
Developing genomic resources for the apiaceae -
Bowman, M., Matvienko, M., Van Deynze, A., Simon, P.W., Senalik, D.A. 2010. Developing genomic resources for the apiaceae [abstract]. Plant and Animal Genome Conference. P. 037.
DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome -
Podgorni, M., Mschichowska, A., Grzebelus, E., Grzebelus, D., Simon, P.W. 2010. DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome [abstract]. Plant and Animal Genome Conference. p. 205.
New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae -
Cavagnaro, P.F., Chung, S., Manin, S., Atkins, A.E., Simon, P.W. 2010. New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae [abstract]. Plant and Animal Genome Conference. P. 038.
Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.) -
Cuevas, H.E., Staub, J.E., Simon, P.W. 2010. Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.). Euphytica. 171(3):301-311.
Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit -
Cuevas, H.E., Song, H., Staub, J.E., Simon, P.W. 2010. Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit. Euphytica. 171(3):301-311.
Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008) -
Ortiz, R., Simon, P.W., Jansky, S.H., Stelly, D. 2009. Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008). Annals Of Botany. 104(5):795-807.
Major QTL for Carrot Color are Associated with Carotenoid Biosynthetic Genes and Interact Epistatically in a Domesticated x Wild Carrot Cross -
Just, B.J., Santos, C.F., Yandell, B.S., Simon, P.W. 2009. Major QTL for Carrot Color are Associated with Carotenoid Biosynthetic Genes and Interact Epistatically in a Domesticated x Wild Carrot Cross. Theoretical and Applied Genetics. 119(7):1155-1169.
Educating the Next Generation of Plant Breeders: The Need and the Challenge -
Baenziger, P.S., Simon, P.W., Wehner, T.C. 2009. Educating the Next Generation of Plant Breeders: The Need and the Challenge. Society for Advancement of Breeding Researches in Asia and Oceania. 14:1-10.
Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding -
Tanumihardjo, S., Horvitz, M., Dosti, M.P., Simon, P.W. 2009. Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding. Experimental Biology and Medicine. 234:1280-1286.
Applying Molecular Markers in Coriander Populations with Diverse Geographical Origins -
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2009. Applying Molecular Markers in Coriander Populations with Diverse Geographical Origins. In: Proceedings of the XIII National Congress of Mexican Society of Horticultural Sciences, August 17-21, 2009, Torreon, Coahuila, Mexico. p. 2.
Genome Wide Characterization of Simple Sequence Repeats in Cucumber -
Weng, Y., Cavagnaro, P., Senalik, D.A., Harkins, T., Simon, P.W. 2009. Genome Wide Characterization of Simple Sequence Repeats in Cucumber [abstract]. International Symposium on Cucurbits Proceedings. p. 80.
A Consensus Linkage Map that Identifies Genomic Regions Controlling Beta-Carotene Quantity and Fruit Maturity in Melon (Cucumis Melo L.) -
Cuevas, H.E., Staub, J.E., Simon, P.W., Zalapa, J.E. 2010. A Consensus Linkage Map that Identifies Genomic Regions Controlling Beta-Carotene Quantity and Fruit Maturity in Melon (Cucumis Melo L.). Theoretical and Applied Genetics. 119:741-756.
Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors -
Sun, T., Simon, P.W., Tanumihardjo, S.A. 2009. Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors. Journal of Agricultural and Food Chemistry. 57(10):4142-4147.
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences -
Simon, P.W., Cavagnaro, P.F., Chung, S., Szklarczyk, M., Grzebelus, D., Senalik, D.A., Atkins, A.E. 2009. Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences. Molecular Genetics and Genomics. 281(3):273-288.
SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries -
Simon, P.W., Cavagnaro, P.F., Senalik, D.A. 2009. SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries. Biotechniques. 47:681-690.
Bitter Gourd: Botany, Horticulture, Breeding -
Behera, T.K., Behera, S., Bharathi, L.K., John, J., Simon, P.W., Staub, J.E. 2010. Bitter Gourd: Botany, Horticulture, Breeding. Plant Breeding Reviews (J. Janick ed.) 37:101-141. Wiley-VCH, Koln, Germany.
The Concept of Horizontal Linkage and Its Application to Genetics and Breeding -
Peloquin, S.J., Simon, P.W., Jansky, S.H. 2009. The Concept of Horizontal Linkage and Its Application to Genetics and Breeding. In: Mohan, R.H., editor. Research Advances in Heredity. 1st edition. Kerala, India:Global Research Network. p. 1-7.
Bioavailability of Anthocyanins from Purple Carrot Juice: Effects of Acylation and Plant Matrix -
Charron, C.S., Kurilich, A.C., Clevidence, B.A., Simon, P.W., Harrison, D.J., Britz, S.J., Baer, D.J., Novotny Dura, J. 2009. Bioavailability of Anthocyanins from Purple Carrot Juice: Effects of Acylation and Plant Matrix. Journal of Agricultural and Food Chemistry. 57(4):1226-1230.
Progress in the Development of Nutrient-Rich Nematode Resistant Carrots -
Simon, P.W., Roberts, P.A., Nunez, J. 2009. Progress in the Development of Nutrient-Rich Nematode Resistant Carrots [abstract]. 33rd International Carrot Conference. Paper No. BG-101.
Genetic Influences on the Seed Yielding Ability of Carrot Hybrids -
Simon, P.W., Kane, R.T. 2009. Genetic Influences on the Seed Yielding Ability of Carrot Hybrids [abstract]. 33rd International Carrot Conference. Paper No. BG-102.
Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization -
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization [abstract]. 33rd International Carrot Conference. Paper No. BG-103.
Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR -
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR [abstract]. 33rd International Carrot Conference. Paper No. BG-104.
Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR -
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 717.
Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae -
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 132.
Association Between Pachytene Chromosomes and Linkage Groups in Carrot -
Simon, P.W., Iovene, M., Cavagnaro, P.F., Jiang, J. 2009. Association Between Pachytene Chromosomes and Linkage Groups in Carrot. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 201.
Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato -
Iovene, M., Wielgus, S.M., Simon, P.W., Buell, C.R., Jiang, J. 2008. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 180(3):1307-1317.
Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils -
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2008. Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils. Journal of Nutrition. 138(9):1692-1698.
DIVERSITY OF DcMaster-LIKE ELEMENTS OF THE PIF/Harbinger SUPERFAMILY IN THE CARROT GENOME Reprint Icon -
Grzebelus, D., Simon, P.W. 2008. Diversity of DcMaster-like elements of the PIF/Harbinger superfamily in the carrot genome. Genetica. Available: http://www.ncbi.nlm.nih.gov/pubmed/18535910.
Major Cytogenetic Landmarks and Karyotype analysis in Carrot and Other Apiaceace -
Iovene, M., Grzebelus, E., Carputo, D., Jiang, J., Simon, P.W. 2008. Major Cytogenetic Landmarks and Karyotype analysis in Carrot and Other Apiaceace. American Journal of Botany. 95:793-804.
Mapping of Genetic Loci that Regulate Accumulation of Beta-Carotene in Fruit of U.S. Western Shipping Melon (Cucumis Melo L.) and Their Association With Putative Carotenoid Biosynthesis Genes -
Cuevas, H.E., Staub, J.E., Simon, P.W., McCreight, J.D., Zalapa, J.E. 2008. Mapping of Genetic Loci that Regulate Accumulation of Beta-Carotene in Fruit of U.S. Western Shipping Melon (Cucumis Melo L.) and Their Association With Putative Carotenoid Biosynthesis Genes. Theoretical and Applied Genetics 117:1345-1359.
Construction and characterization of a deep-coverage carrot (Daucus carota L.) BAC library -
Cavagnaro, P.F., Chung, S., Simon, P.W. 2008. Construction and characterization of a deep-coverage carrot (Daucus carota L.) BAC library [abstract]. 2008 Plant and Animal Genome Meeting. p. 56.
Major Cytogenetic Landmarks and Karyotype Analysis in Carrot (Daucus carota L.) and Other Apiaceace -
Iovene, M., Grzebelus, E., Carputo, D., Jiang, J., Simon, P.W. 2008. Major Cytogenetic Landmarks and Karyotype Analysis in Carrot (Daucus carota L.) and Other Apiaceace [abstract]. 2008 Plant and Animal Genome Meeting. p. 201.
Plant Breeding for Human Nutritional Quality -
Simon, P.W., Pollak, L.M., Clevidence, B.A., Holden, J.M., Haytowitz, D.B. 2009. Plant Breeding for Human Nutritional Quality. Plant Breeding Reviews. 31:325-415.
Carrot -
Simon, P.W., Freeman, R.E., Vieira, J.V., Boiteux, L.S., Briard, M., Nothnagel, T., Michalik, B., Kwon, Y. 2008. Carrot. In: Prohens, J., Nuez, F. editors. Handbook of Plant Breeding. Volume 2. New York, NY: Springer. p. 327-357.
Bitter Gourd; A vegetable to Improve Human Health -
Behera, T., Simon, P.W., Staub, J.E. 2007. Bitter Gourd; A vegetable to Improve Human Health. Medicinal and Aromatic Plants: Production, Business and Applications. 1(2):224-227.
Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor -
Ipek, M., Ipek, A., Simon, P.W. 2008. Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor. Scientia Horticultureae. 115(4):409-415.
Role of Color and Pigments in Breeding, Genetics, and Nutritional Improvement of Carrots -
Simon, P.W., Tanumihardjo, S.A., Clevidence, B.A., Novotny Dura, J. 2008. Role of Color and Pigments in Breeding, Genetics, and Nutritional Improvement of Carrots. In: Culver, C.A., Wrolstad, R.E., editors. Color Quality of Fresh and Processed Foods. Washington, D.C.: Oxford University Press. p. 151-165.
A Chromosome-Specific Estimate of Transmission of Heterozygosity by 2n Gametes in Potato -
Peloquin, S.J., Boiteux, L.S., Simon, P.W., Jansky, S.H. 2008. A chromosome-specific estimate of transmission of heterozygosity by 2n gametes in potato. Journal of Heredity. 99(2):177-181.
Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey -
Ipek, M., Ipek, A., Simon, P.W. 2008. Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey. Scientia Horticultureae. 115(2):203-208.
Characterization of an Unusual Cytoplasmic Chimera Detected in Bolting Garlic (Allium sativum L.) Clones -
Ipek, M., Ipek, A., Senalik, D.A., Simon, P.W. 2007. Characterization of an Unusual Cytoplasmic Chimera Detected in Bolting Garlic (Allium sativum L.) Clones. Journal of the American Society for Horticultural Science. 132:664-669.
Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas -
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2008. Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas. Euphytica. 159(1-2):103-109.
ß-Carotene from Red Carrot Maintains Vitamin A Status, but Lycopene Bioavailability Is Lower Relative to Tomato Paste in Mongolian Gerbils -
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2007. ß-Carotene from Red Carrot Maintains Vitamin A Status, but Lycopene Bioavailability Is Lower Relative to Tomato Paste in Mongolian Gerbils. Journal of Nutrition. 137:1395-1400.
Carotenoid pathway genes and accumulation of B-carotene in Cucumis melo L -
Cuevas, H.E., Staub, J.E., Simon, P.W., McCreight, J.D., Zalapa, J.E. 2007. Carotenoid pathway genes and accumulation of B-carotene in Cucumis melo L [abstract]. American Society for Horticultural Science 104th Annual Conference. 42(4):1013-1014.
Assessing phenotypic, biochemical, and molecular diversity in coriander (Coriandrum sativum L.) germplasm -
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Boylston, T.D., Isbell, T., Bailey, T.B., Gardner, C.A., Wilson, L.A. 2008. Assessing phenotypic, biochemical, and molecular diversity in coriander (Coriandrum sativum L.) germplasm. Genetic Resources and Crop Evolution. 55:247-275.
SCREENING CORIANDER GENE POOL FOR SPECIAL USES -
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2007. Screening coriander gene pool for special uses. In: Janick, J. and Whipkey, A., editors. Issues in New Crops and New Uses. 2006 AAIC Annual Meeting and Sixth New Crops Symposium, October 14-18, 2006, San Diego, California. p. 280-283.
Effect of cooking on garlic (Allium sativum) antiplatelet activity and thiosulfinates content -
Cavagnaro, P.F., Camargo, A., Galmarini, C.R., Simon, P.W. 2007. Effect of cooking on garlic (Allium sativum) antiplatelet activity and thiosulfinates content. Journal of Agricultural and Food Chemistry. 55:1280-1288.
Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping -
Just, B.J., Santos, C., Boiteux, L.S., Oloizia, B.B., Simon, P.W. 2006. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping. Journal of Theoretical and Applied Genetics. 114:693-704.
Bioavailability of beta-carotene (betaC) from purple carrots is the same as typical orange carrots while high-betaC carrots increase betaC stores in Mongolian gerbils (Meriones unguiculatus) -
Porter Dosti, M., Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2006. Bioavailability of beta-carotene (betaC) from purple carrots is the same as typical orange carrots while high-betaC carrots increase betaC stores in Mongolian gerbils (Meriones unguiculatus). British Journal of Nutrition. 96(2):260-269.
SCREENING THE GENE POOL FOR SPECIAL USES IN CORIANDER -
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2006. Screening the gene pool for special uses in coriander [abstract]. Association for the Advancement of Industrial Crops Conference. p. 68
The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome -
Grzebelus, D., Jagosz, B., Simon, P.W. 2007. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome. Gene. 390:67-74.
SEQUENCE HOMOLOGY OF POLYMORPHIC AFLP MARKERS IN GARLIC (ALLIUM SATIVUM L.) -
Ipek, M., Ipek, A., Simon, P.W. 2006. Sequence homology of polymorphic AFLP markers in garlic (Allium sativum l.). Genome. 49:1246-1255.
Geographical Distribution of Wild Daucus Species in the Natural Grasslands of the Argentinian Pampas -
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2007. Geographical Distribution of Wild Daucus Species in the Natural Grasslands of the Argentinian Pampas . Genetic Resources and Crop Evolution. 54(4):855-863.
ASSOCIATION OF REVERSIBLE INACTIVATION OF MAIZE TRANSPOSABLE ELEMENT, DS, WITH TISSUE-SPECIFIC PROCESSING OF THE 35S:TPASE TRANSCRIPT IN CARROT (DAUCUS CAROTA L.) -
Ipek, A., Ipek, M., Simon, P.W. 2006. Association of reversible inactivation of maize transposable element, Ds, with tissue-specific processing of the 35s:TPase transcript in carrot (Daucus carota l.)[abstract]. Journal of Horticultural Science and Biotechnology. 81:819-826.
Carrot -
Simon, P.W., Goldman, I.L. 2007. Carrot. In: Singh, R.J. Genetic Resources, Chromosome Engineering, and Crop Improvement Series, Volume 3. Boca Raton: CRC Press. p. 497-517.
HERITABILITIES AND MINIMUM GENE NUMBER ESTIMATES OF CARROT CAROTENOIDS -
Santos, C., Simon, P.W. 2006. Heritabilities and minimum gene number estimates of carrot carotenoids. Euphytica. 151:79-86.
MASTER - A NOVEL FAMILY OF PIF/HARBINGER-LIKE TRANSPOSABLE ELEMENTS IDENTIFIED IN CARROT (DAUCUS CAROTA L.) -
Grzebelus, D., Yau, Y., Simon, P.W. 2006. Master - a novel family of PIF/Harbinger-like transposable elements identified in carrot (Daucus carota L.). Molecular Genetics and Genomics. 275:450-459.
SINGLE SEED RAMAN MEASUREMENTS ALLOW TAXONOMICAL DISCRIMINATION OF APIACEAE ACCESSIONS COLLECTED IN GENE BANKS -
Baranski, R., Baranska, M., Schulz, H., Simon, P.W., Nothnagel, T. 2006. Single seed Raman measurements allow taxonomical discrimination of Apiaceae accessions collected in gene banks. Biopolymers. 81:497-505.
Sequence Tagged Microsatelite Sites for Carrot (Daucus Carota L.) -
Hyman, J.R., Simon, P.W. 2005. Sequence Tagged Microsatelite Sites for Carrot (Daucus Carota L.). Molecular Breeding. 16:1-10.
GENETIC TRANSFORMATION OF AN AC/DS - BASED TRANSPOSON TAGGING SYSTEM IN CARROT (DAUCUS CAROTA) -
Ipek, A., Masson, P., Simon, P.W. 2006. Genetic transformation of an Ac/Ds - based transposon tagging system in carrot (Daucus carota). European Journal of Horticultural Science. 71:245-251.
CHARACTERIZATION OF ANTHOCYANINS FROM DIVERSE GERMPLASM OF PURPLE CARROT -
Silva, E., Simon, P.W. 2003. Characterization of anthocyanins from diverse germplasm of purple carrot [abstract]. HortScience. 38:674.
PLASMA AND URINE RESPONSES ARE LOWER FOR ACYLATED VS NONACYLATED ANTHOCYANINS FROM RAW AND COOKED PURPLE CARROT. -
Kurilich, A.C., Clevidence, B.A., Britz, S.J., Simon, P.W., Novotny Dura, J. 2005. Plasma and urine responses are lower for acylated vs nonacylated anthocyanins from raw and cooked purple carrot. Journal of Agricultural and Food Chemistry. 53:6537-6542.
Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products -
Silva, E.M., Simon, P.W. 2006. Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products. In: Friedman, M., Mottram, D., editors. Advances in Experimental Medicine and Biology. New York, NY:Springer. p. 371-386.
VEGETABLES AND VITAMINS, PLANTS AND PEOPLE -
Simon, P.W. 2005. Vegetables and vitamins, plants and people. Folia Horticulturae. 15:3-12.
PATH ANALYSIS SUGGESTS PHYTOENE ACCUMULATION AS THE KEY STEP LIMITING THE CAROTENOID PATHWAY IN ROOTS OF WHITE CARROT -
Santos, C.A., Senalik, D.A., Simon, P.W. 2005. Path analysis suggests phytoene accumulation as the key step limiting the carotenoid pathway in roots of white carrot. Genetics and Molecular Biology. 28:287-293.
CAROTENOID PROFILES AND CONSUMER SENSORY EVALUATION OF SPECIALTY CARROTS -
Surles, R., Weng, N., Simon, P.W., Tanumihardjo, S. 2004. Carotenoid profiles and consumer sensory evaluation of specialty carrots. Journal of Agriculture and Food Chemistry. 52:3417-3421.
MOLECULAR TAGGING AND SELECTION FOR SUGAR-TYPE IN CARROT ROOTS USING CO-DOMINANT, PCR-BASED MARKERS -
Yau, Y.Y., Santos, K., Simon, P.W. 2005. Molecular tagging and selection for sugar-type in carrot roots using co-dominant, PCR-based markers. Molecular Breeding. 16:1-10
MAPPING OF MAJOR CARROT COLOR GENES AN EX EXPRESSION OF CAROTENOID BIOSYNTHETIC GENES -
Just, B., Simon, P.W. 2004. Mapping of major carrot color genes an ex expression of carotenoid biosynthetic genes [abstract]. Hortscience. 39:870.
DEMONSTRATION OF LINKAGE AND DEVELOPMENT OF THE FIRST LOW-DENSITY GENETIC MAP OF GARLIC BASED ON AFLPTM MARKERS -
Ipek, M., Ipek, A., Almquist, S.G., Simon, P.W. 2005. Demonstration of linkage and development of the first low-density genetic map of garlic based on aflptm markers. Theoretical and Applied Genetics. 110:228-236.
REALIZING VALUE FROM CENTRAL ASIAN ALLIUM GERMPLASM COLLECTIONS -
Simon, P.W. 2005. Realizing value from Central Asian Allium germplasm collections. HortScience. 40:309-310.
LUTEIN AND BETA-CAROTENE ARE BIOAVAILABLE IN HUMANS FROM LUTEIN-CONTAINING YELLOW CARROTS -
Molldrem, K., Li, J., Simon, P.W., Tanumijardjo, S. 2004. Lutein and beta-carotene are bioavailable in humans from lutein-containing yellow carrots. American Journal of Clinical Nutrition. 80:131-136.
EMPLOYMENT OF FLANKING CODOMINANT STS MARKERS TO ESTIMATE ALLELIC SUBSTITUTION EFFECTS OF A NEMATODE RESISTANCE LOCUS IN CARROT -
Boiteux, L.S., Hyman, J.R., Bach, I.C., Fonseca, M.N., Matthews, W.C., Roberts, P.A., Simon, P.W. 2004. Employment of flanking codominant STS markers to estimate allelic substitution effects of a nematode resistance locus in carrot. Euphytica. 136:37-44.
MERGING CARROT LINKAGE GROUPS BASED ON CONSERVED DOMINANT AFLP MARKERS IN F2 POPULATIONS -
Santos, C.A., Simon, P.W. 2004. Merging carrot linkage groups based on conserved dominant AFLP markers in F2 populations. Journal of the American Society for Horticultural Science. 129:211-217.
ENVIRONMENTAL AND GENETIC EFFECTS ON GARLIC GROWTH, FLOWERING, AND BULB CHARACTERS -
Simon, P.W., Hannan, R.M., Jenderek, M.M., Voss, R.E. 2003. Environmental and genetic effects on garlic growth, flowering, and bulb characters [abstract]. Hortscience. 38:783.
RELATIVE BIOAVAILABILITY OF LYCOPENE FROM LYCOPENE "RED" CARROTS COMPARED TO TOMATO -
Horvitz, M.A., Simon, P.W., Tanumihardjo, S.A. 2004. Relative bioavailability of lycopene from lycopene "red" carrots compared to tomato. American Journal of Clinical Nutrition.
SEQUENCING OF SPECIFIC AFLP AMPLICONS REVEALS HIGHLY CONSERVED DNA SEQUENCES MAPPING TO THE SAME LINKAGE GROUPS IN TWO UNRELATED F2 POPULATIONS OF CARROT -
Santos, C.A., Simon, P.W. 2003. Sequencing of specific AFLP amplicons reveals highly conserved DNA sequences mapping to the same linkage groups in two unrelated F2 populations of carrot. Genetics and Molecular Biology. 25:195-201.
A 2.5-KB INSERT ELIMINATES ACID SOLUBLE INVERTASE ISOZYME II TRANSCRIPT IN CARROT (DAUCUS CAROTA L.) ROOTS, CAUSING HIGH SUCROSE ACCUMULATION -
Yau, Y., Simon, P.W. 2003. A 2.5-kb insert eliminates acid soluble invertase isozyme II transcript in carrot (Daucus carota L.) roots, causing high sucrose accumulation. Plant Molecular Biology. 53:151–162.
A CAROTENOID BIOSYNTHESIS FUNCTION MAP IN CARROT -
Just, B., Santos, C., Simon, P.W. 2003. A carotenoid biosynthesis function map in carrot [abstract]. HortScience. 38:717.
DEVELOPMENT OF CO-DOMINANT MARKERS LINKED TO THE MJ-L LOCUS IN CARROT (DAUCUS CAROTA L. SSP. SATIVUS) -
Hyman, J., Simon, P.W., Burmeister, A. 2003. Development of co-dominant markers linked to the Mj-l locus in carrot (Daucus carota L. ssp. sativus)[abstract]. HortScience. 38:717.
MOLECULAR DATA SUGGEST MULTIPLE MEMBERS COMPRISING THE ALLIINASE GENE FAMILY IN GARLIC -
Cavagnaro, P., Masuelli, R., Simon, P.W. 2003. Molecular data suggest multiple members comprising the alliinase gene family in garlic [abstract]. HortScience. 38:804-805.
NUTRITIONAL QUALITY -
Just, B., Simon, P.W. 2004. Nutritional quality. Book Chapter.
FLOWERING, SEED PRODUCTION AND THE GENESIS OF GARLIC BREEDING -
Simon, P.W., Jenderek, M.M. 2003. Flowering, seed production and the genesis of garlic breeding. Plant Breeding. 32:211-244.
QTL ANALYSES REVEAL CLUSTERED LOCI FOR ACCUMULATION OF MAJOR PROVITAMIN A CAROTENES AND LYCOPENE IN CARROT ROOTS -
Santos, C.A., Simon, P.W. 2002. QTL analyses reveal clustered loci for accumulation of major provitamin A carotenes and lycopene in carrot roots. Molecular Genetics and Genomics. 268:122-129.
COMPARISON OF AFLPS, RAPD MARKERS, AND ISOZYMES FOR DIVERSITY ASSESSMENT OF GARLIC AND DETECTION OF PUTATIVE DUPLICATES IN GERMPLASM COLLECTIONS -
Ipek, M., Ipek, A., Simon, P.W. 2003. Comparison of AFLPs, RAPD markers, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collections. Journal of the American Society for Horticultural Science. 128:246-252.
CLASSICAL AND MOLECULAR BREEDING FOR DISEASE AND PEST RESISTANCE IN CARROTS -
PIGMENTS -
CAROTENOIDS -
PCR-BASED MARKERS TO DIFFERENTIATE THE MITOCHONDRIAL GENOMES OF PETALOID AND MALE FERTILE CARROT (DAUCUS CAROTA L.) -
Bach, I.C., Olesen, A., Simon, P.W. 2002. PCR-based markers to differentiate the mitochondrial genomes of petaloid and male fertile carrot (Daucus carota L.). Euphytica. 127:353-365.
DIVERSITY, FERTILITY AND SEED PRODUCTION OF GARLIC -
Etoh, T., Simon, P.W. 2002. Diversity, fertility and seed production of garlic. In: Rabinowitch, H.D. and Currah, L., editors. Advances in Allium Science. New York, NY: CABI Publishing. p. 101-118.
THE USE OF AFLP MARKERS FOR THE IDENTIFICATION OF CARROT BREEDING LINES ANDF1 HYBRIDS -
MOLECULAR DIVERSITY ANALYSIS OF CULTIVATED CARROT (DAUCUS CAROTA L.) AND WILD DAUCUS POPULATIONS REVEALS A GENETICALLY UNSTRUCTURED COMPOSITION -
SEQUENCING OF SPECIFIC AFLP AMPLICONS REVEALS HIGHLY CONSERVED DNA SEQUENCES MAPPING TO THE SAME LINKAGE GROUPS IN TWO UNRELATED F2 POPULATIONS OF CARROT -
DIALLEL ANALYSIS OF HIGH CAROTENOID CONTENT IN CUCUMBER FRUIT -
CLASSICAL BREEDING TO IMPROVE VEGETABLE VITAMIN AND PROVITAMIN CONTENT -
MODIFIED PROTOCOLS FOR RAPID EXTRACTION OF PLANT GENOMIC DNA, AFLP ANALYSISAND VISUALIZATION WITH RADIOISOTOPE OR SILVER STAIN IN CARROTS -
DOMESTICATION, HISTORICAL DEVELOPMENT, AND MODERN BREEDING OF CARROT -
CARROTS AND RELATED VEGETABLE UMBELLIFERAE -
MOLECULAR BREEDING OF VEGETABLE CROPS FOR IMPROVED PROVITAMIN A CAROTENOID CONTENT -
PCR MARKERS SPECIFIC FOR THE MITOCHONDRIAL GENOME OF PETALOID CARROT (DAUCUS CAROTA L.) -
LACK OF ACID SOLUBLE INVERTASE ISOZYME II TRANSCRIPT IS ASSOCIATED WITH HIGH SUCROSE ACCUMULATION IN A NATURALLY OCCURRING INVERTASE MUTANT OF CARROT (DAUCUS CAROTA L.) -
IMPROVED PHYTONUTRIENT CONTENT THROUGH PLANT GENETIC IMPROVEMENT -
EVIDENCE FOR SIMPLY INHERITED DOMINANT RESISTANCE TO MELOIDOGYNE JAVANICA IN CARROT -
RAPD LINKAGE MAP OF THE GENOMIC REGION ENCOMPASSING THE ROOT-KNOT NEMATODE MELOIDOGYNE JAVANICA RESISTANCE LOCUS IN CARROT -
EVIDENCE FOR MATERNAL INHERITANCE OF THE CHLOROPLAST GENOME IN CULTIVATED CARROT (DAUCUS CAROTA L. SSP. SATIVUS) -
LINKAGE RELATIONSHIPS AMONG MOLECULAR MARKERS AND STORAGE ROOT TRAITS OF CARROT (DAUCUS CAROTA L. SSP. SATIVUS) -
CONVERSION OF AN AFLP FRAGMENT LINKED TO THE CARROT Y2 LOCUC TO A SIMPLE, CODOMINANT, PCR-BASED MARKER FORM -
EXPRESSION OF SOLUBLE INVERTASE IN TRANSFORMED CARROT -
EFFECTS OF PLANT TISSUE AND DNA PURIFICATION METHOD ON RAPD BASED GENETIC FINGERPRINTING ANALYSIS IN (DAUCUS CAROTA L) -
GENETIC RELATIONSHIPS AND DIVERSITY IN CARROT AND OTHER DAUCUS TAXA BASED ON NUCLEAR TESTRICTION FRAGMENT LENGTH POLYMORPHISMS (NRFLPS) -
AFLP-DERIVED, CODOMINANT MARKERS FOR LOCUS-SPECIFIC APPLICATIONS -
PHYLOGENY AND RELATIONSHIPS IN DAUCUS BASED ON RESTRICTION FRAGMENT LENGTH POLYMORPHISMS (RFLPS) OF THE CHLOROPLAST AND MITOCHONDRIAL GENOMES -
CONTINUOUS CALLUS PRODUCTION AND REGENERATION OF GARLIC (ALLIUM SATIVUM L) USING ROOT SEGMENTS FROM SHOOT TIP-DERIVED PLANTLETS -
PROMOTER ACTIVITY AND OSMOTICUM EFFECT IN GARLIC AND ONION FOR TRANSFORMATION -
B7262, PURPLE CARROT INBRED -
MOLECULAR MAPPING OF CARROT (DAUCUS CAROTA L.) USING RFLP AND RAPD MARKERS -
Last Modified: 8/26/2016
Footer Content Back to Top of Page