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Scott M Geib
Research Entomologist


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Taro genome assembly and linkage map reveal QTLs for resistance to Taro Leaf Blight - (Peer Reviewed Journal)
Bellinger, M.R., Paudel, R., Starnes, S., Kambic, L., Kantar, M., Wolfgruber, T., Lamour, K., Geib, S.M., Sim, S.B., Miyasaka, S., Helmkampf, M., Shintaku, M. 2020. Taro genome assembly and linkage map reveal QTLs for resistance to Taro Leaf Blight. G3, Genes/Genomes/Genetics. 10(8):2763-2775. https://doi.org/10.1534/g3.120.401367.
Phylogenomics of an endangered beetle reveals challenges and opportunities for broader conservation planning in a rapidly disappearing desert ecosystem - (Peer Reviewed Journal)
Rubinoff, D., Reil, J., Osborne, K., Gregory, C., Geib, S.M., Dupuis, J. 2020. Phylogenomics of an endangered beetle reveals challenges and opportunities for broader conservation planning in a rapidly disappearing desert ecosystem. Biodiversity and Conservation Journal. 29:2185-2200. https://doi.org/10.1007/s10531-020-01968-w.
Evidence for evolutionary change in invasive populations of Drosophila suzukii in Hawai‘i - (Peer Reviewed Journal)
Koch, J.B., Dupuis, J.R., Jardeleza, M., Ouedraogo, N., Geib, S.M., Follett, P.A., Price, D.K. 2020. Evidence for evolutionary change in invasive populations of Drosophila suzukii in Hawai‘i. Biological Invasions. 22:1753-1770. https://doi.org/10.1007/s10530-020-02217-5.
Implementing low-cost, high accuracy DNA barcoding from single molecule sequencing to screen larval tephritid fruit fly intercepted at ports of entry - (Peer Reviewed Journal)
Garzon, I., Geib, S.M., Bremer, F., Barr, N. 2020. Implementing low-cost, high accuracy DNA barcoding from single molecule sequencing to screen larval tephritid fruit fly intercepted at ports of entry. Annals of the Entomological Society of America. 113(4):288-297. https://doi.org/10.1093/aesa/saz071.
A high-quality Genome assembly from a single, field-collected Spotted Lanternfly (Lycorma delicatula) using the PacBio Sequel II System - (Peer Reviewed Journal)
Kingan, S.B., Urban, J., Lambert, C.C., Baybayan, P., Childers, A.K., Coates, B.S., Scheffler, B.E., Hackett, K.J., Korlack, J., Geib, S.M. 2019. A high-quality Genome assembly from a single, field-collected Spotted Lanternfly (Lycorma delicatula) using the PacBio Sequel II System. Gigascience. 8(10):1-10. https://doi.org/10.1093/gigascience/giz122.
Targeted amplicon sequencing of 40 nuclear genes supports a single introduction and rapid radiation of Hawaiian Metrosideros (Myrtaceae) - (Peer Reviewed Journal)
Dupuis, J.R., Pillon, Y., Sakishima, T., Gemmill, C., Chamala, S., Barbazuk, W., Geib, S.M., Stacy, E.A. 2019. Targeted amplicon sequencing of 40 nuclear genes supports a single introduction and rapid radiation of Hawaiian Metrosideros (Myrtaceae). Plant Systematics and Evolution. pp 1-14. https://doi.org/10.1007/s00606-019-01615-0.
Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing - (Peer Reviewed Journal)
Helmkampf, M., Bellinger, R., Geib, S.M., Sim, S.B., Takabayashi, M. 2019. Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Genome Biology and Evolution. 11(7):2045-2054. https://doi.org/10.1093/gbe/evz135.
Range-wide population genomics of the Mexican fruit fly: Toward development of pathway analysis tools - (Peer Reviewed Journal)
Dupuis, J., Ruiz, R., Barr, N., Thomas, D.B., Geib, S.M. 2019. Range-wide population genomics of the Mexican fruit fly: Toward development of pathway analysis tools. Evolutionary Applications. 12(8):1641-1660. https://doi.org/10.1111/eva.12824.
Wheat streak mosaic virus alters the transcriptome of its vector, wheat curl mite (Aceria tosichella Keifer), to enhance mite development and population expansion - (Peer Reviewed Journal)
Guptar, A.K., Scully, E.D., Palmer, N.A., Geib, S.M., Sarath, G., Hein, G.L., Tatineni, S. 2019. Wheat streak mosaic virus alters the transcriptome of its vector, wheat curl mite (Aceria tosichella Keifer), to enhance mite development and population expansion. Journal of General Virology. 100(5):889-910. https://doi.org/10.1099/jgv.0.001256.
The genetic diversity of Bactrocera dorsalis (Diptera: Tephritidae) in China and neighboring countries: A review from published studies - (Peer Reviewed Journal)
Garzon-Orduna, I.J., Geib, S.M., Barr, N.B. 2019. The genetic diversity of Bactrocera dorsalis (Diptera: Tephritidae) in China and neighboring countries: A review from published studies. Journal of Economic Entomology. 112(4):2001-2006. https://doi.org/10.1093/jee/toz073.
Divergent switchgrass cultivars modify cereal aphid transcriptomes - (Peer Reviewed Journal)
Koch, K.G., Scully, E.D., Palmer, N.A., Geib, S.M., Sarath, G., Heng-Moss, T., Bradshaw, J.D. 2019. Divergent switchgrass cultivars modify cereal aphid transcriptomes. Journal of Economic Entomology. 112(4):1887-1901. https://doi.org/10.1093/jee/toz053.
Phylogenomics supports localized and taxonomically-incongruous ecological specialization in a North American moth clade (the Hemileuca maia species complex) - (Peer Reviewed Journal)
Dupuis, J.R., Peigler, R.S., Geib, S.M., Rubinoff, D. 2018. Phylogenomics supports localized and taxonomically-incongruous ecological specialization in a North American moth clade (the Hemileuca maia species complex). Molecular Ecology. 27:4417-4429. https://doi.org/10.1111/mec.14883.
Comparative proteomic profiling within each developmental stage of the solanum fruit fly, Bactrocera latifrons Hendel - (Peer Reviewed Journal)
Chang, C.L., Geib, S.M. 2018. Comparative proteomic profiling within each developmental stage of the solanum fruit fly, Bactrocera latifrons Hendel. Journal of Asia Pacific Entomology. https://doi.org/10.1016/j.aspen.2018.08.014.
Tracking the origins of fly invasions; using mitochondrial haplotype diversity to identify potential source populations in two genetically intertwined fruit fly species (Bactrocera carambolae and B. dorsalis) - (Peer Reviewed Journal)
San Jose, M., Doorenweerd, C., Leblanc, L., Barr, N., Geib, S.M., Rubinoff, D. 2018. Tracking the origins of fly invasions; using mitochondrial haplotype diversity to identify potential source populations in two genetically intertwined fruit fly species (Bactrocera carambolae and B. dorsalis). Journal of Economic Entomology. 111(6):2914-2926. https://doi.org/10.1093/jee/toy272.
Rapid viral symbiogenesis via changes in parasitoid wasp genome architecture - (Peer Reviewed Journal)
Burke, G.R., Simmonds, T.J., Sharanowski, B.J., Geib, S.M. 2018. Rapid viral symbiogenesis via changes in parasitoid wasp genome architecture. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msy148__.
Comparative proteomic profiling between each of two consecutive developmental stages of the Solanum fruit fly, Bactrocera latifrons (Hendel) - (Peer Reviewed Journal)
Chang, C.L., Geib, S.M. 2018. Comparative proteomic profiling between each two consecutive developmental stages of the Solanum fruit fly, Bactrocera latifrons (Hendel). International Journal of Molecular Sciences. doi:10.3390/ijms19071996.
Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis) - (Peer Reviewed Journal)
Scully, E.D., Geib, S.M., Mason, C.J., Carlson, J.E., Tien, M., Chen, H., Harding, S., Tsai, C., Hoover, K. 2018. Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis). Scientific Reports. 8:9620. doi:10.1038/s41598-018-27476-0.
Molecular characterization of the 2016 new world screwworm fly outbreak in the Florida Keys - (Peer Reviewed Journal)
Dupuis, J.R., Guerrero, F., Skoda, S.R., Phillips, P.L., Welch, J.B., Schlater, J.L., Azeredo-Espin, A.L., Perez De Leon, A.A., Geib, S.M. 2018. Molecular characterization of the 2016 new world screwworm fly outbreak in the Florida Keys. Journal of Medical Entomology. 55(4):938-946.
HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing - (Peer Reviewed Journal)
Dupuis, J.R., Bremer, F.T., Kauwe, A.N., San Jose, M., Leblanc, L., Rubinoff, D., Geib, S.M. 2018. HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing. Molecular Ecology Resources. 18:1000-1019. https://doi.org/10.1111/1755-0998.12783.
Genome annotation generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission - (Peer Reviewed Journal)
Geib, S.M., Hall, B., Derego, T., Sim, S.B. 2018. Genome annotation generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission. Gigascience. 7(4):1-5. https://doi.org/10.1093/gigascience/giy018.
Comparative rearing parameters for bisexual and genetic sexing strains of Zeugodacus cucurbitae and Bactrocera dorsalis (Diptera: Tephritidae) on an artificial diet - (Peer Reviewed Journal)
Fezza, T.J., Geib, S.M., Shelly, T.E. 2018. Comparative rearing parameters for bisexual and genetic sexing strains of Zeugodacus cucurbitae and Bactrocera dorsalis (Diptera: Tephritidae) on an artificial diet. Journal of Asia-Pacific Entomology. 21:283-287. https://doi.org/10.1016/j.aspen.2018.01.007.
Proteomic interactions between the parasitoid Diachasmimorpha longicaudata and the oriental fruit fly, Bactrocera dorsalis during host parasitism - (Peer Reviewed Journal)
Chang, C.L., Liang, G., Geib, S.M. 2017. Proteomic interactions between the parasitoid Diachasmimorpha longicaudata and the oriental fruit fly, Bactrocera dorsalis during host parasitism. Journal of Asia Pacific Entomology. https://doi.org/10.1016/j.aspen.2017.12.002.
Incongruence between molecules and morphology: A seven-gene phylogeny of Dacini fruit flies paves the way for reclassification (Diptera: Tephritidae) - (Peer Reviewed Journal)
San Jose, M., Doorenweerd, C., Leblanc, L., Barr, N., Geib, S.M., Rubinoff, D. 2018. Incongruence between molecules and morphology: A seven-gene phylogeny of Dacini fruit flies paves the way for reclassification (Diptera: Tephritidae). Molecular Phylogenetics and Evolution. 121:139-149.
Molecular characterization of interspecific competition of Diachasmimorpha longicaudata (Ashmead) and Fopius arisanus (Sonan) parasitizing the oriental fruit fly, Bactrocera dorsalis (Hendel) - (Peer Reviewed Journal)
Liang, G., Fu, L., Lin, H., Sim, S.B., Jang, E.B., Heller, W., Geib, S.M. 2018. Molecular characterization of interspecific competition of Diachasmimorpha longicaudata (Ashmead) and Fopius arisanus (Sonan) parasitizing the oriental fruit fly, Bactrocera dorsalis (Hendel). Biological Control. https://doi.org/10.1016/j.biocontrol.2017.11.012.
Arthropod genomics research in the United States Department of Agriculture-Agricultural Research Service: Applications of RNA interference and CRISPR gene editing technologies in pest control - ()
Gundersen, D.E., Adrianos, S.L., Allen, M.L., Becnel, J.J., Chen, Y., Choi, M.Y., Estep, A., Evans, J.D., Garczynski, S.F., Geib, S.M., Ghosh, S.B., Handler, A.M., Hasegawa, D.K., Heerman, M.C., Hull, J.J., Hunter, W.B., Kaur, N., Li, J., Li, W., Ling, K., Nayduch, D., Oppert, B.S., Perera, O.P., Perkin, L.C., Sanscrainte, N.D., Sim, S.B., Sparks, M., Temeyer, K.B., Vander Meer, R.K., Wintermantel, W.M., James, R.R., Hackett, K.J., Coates, B.S. 2017. Arthropod genomics research in the United States Department of Agriculture-Agricultural Research Service: Applications of RNA interference and CRISPR gene editing technologies in pest control. Trends in Entomology. 13:109-137.
Population genomics and comparisons of selective signatures in two invasions of melon fly, Bactrocera cucurbitae (Diptera: Tephritidae) - (Peer Reviewed Journal)
Dupuis, J., Sim, S.B., San Jose, M., Leblanc, L., Hoassain, A., Rubinoff, D., Geib, S.M. 2017. Population genomics and comparisons of selective signatures in two invasions of melon fly, Bactrocera cucurbitae (Diptera: Tephritidae). Biological Invasions. 20(5):1211-1228. https://doi.org/10.1007/s10530-017-1621-z.
MVMAPPER: Interactive spatial mapping of genetic structures - (Peer Reviewed Journal)
Dupuis, J.R., Bremer, F.T., Jombart, T., Sim, S.B., Geib, S.M. 2017. MVMAPPER: Interactive spatial mapping of genetic structures. Molecular Ecology Resources. 18(2):362-367. https://doi.org/10.1111/1755-0998.12724.
A new diagnostic resource for Ceratitis capitata strain identification based on QTL mapping - (Peer Reviewed Journal)
Sim, S.B., Ruiz, R.A., Barr, N.B., Geib, S.M. 2017. A new diagnostic resource for Ceratitis capitata strain identification based on QTL mapping. G3, Genes/Genomes/Genetics. 11:3637-3647. https://doi.org/10.1534/g3.117.300169.
De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly - (Peer Reviewed Journal)
Frazier, M., Helmkampf, M., Bellinger, R., Geib, S.M., Takabayashi, M. 2017. De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly Biomed Central (BMC) Genomics. https://doi.org/10.1186/s12864-017-4090-y.
PCR-based gut content analysis to detect predation of Eriococcus ironsidei (Hemiptera: Eriococcidae) by Coccinellidae species in macadamia nut orchards in Hawaii - (Peer Reviewed Journal)
Gutierrez-Coarite, R., Yoneishi, N., Mollinedo, J., Pulakkatu-Thodi, I., Wright, M., Geib, S.M. 2018. PCR-based gut content analysis to detect predation of Eriococcus ironsidei (Hemiptera: Eriococcidae) by Coccinellidae species in macadamia nut orchards in Hawaii. Journal of Economic Entomology. https://doi:10.1093/jee/toy019.
The ABC's of CRISPR in Tephritidae: developing methods for inducing heritable mutations in the genera Anastrepha, Bactrocera, and Ceratitis - (Peer Reviewed Journal)
Sim, S.B., Kauwe, A.N., Ruano, R.E., Rendon, P., Geib, S.M. 2017. The ABC's of CRISPR in Tephritidae: developing methods for inducing heritable mutations in the genera Anastrepha, Bactrocera, and Ceratitis. Insect Molecular Biology. 28(2):277-289. https://doi.org/10.1111/imb.12550.
Variation in DNA methylation is not consistently reflected by CpG depletion or sociality in Hymenoptera - (Peer Reviewed Journal)
Glastad, K.M., Arsenault, S.V., Vertacnik, K.L., Geib, S.M., Kay, S., Danforth, B.N., Rehan, S.M., Linnen, C.R., Kocher, S.D., Hunt, B.G. 2017. Variation in DNA methylation is not consistently reflected by CpG depletion or sociality in Hymenoptera. Genome Biology and Evolution. doi:10.1093/gbe/evx128.
Whole genome sequencing of the Braconid parasitoid wasp Fopius arisanus, an important biocontrol agent of pest Tepritid fruit flies - (Peer Reviewed Journal)
Geib, S.M., Guang Hong, L., Sim, S.B., Murphy, T. 2017. Whole genome sequencing of the Braconid parasitoid wasp Fopius arisanus, an important biocontrol agent of pest Tepritid fruit flies. G3, Genes/Genomes/Genetics. doi:10.1534/g3.117.040741.
A Chromosome-scale assemby of the Bactrocera cucurbitae genome provides insight to the genetic basis of white pupae - (Peer Reviewed Journal)
Sim, S., Geib, S.M. 2017. A Chromosome-scale assemby of the Bactrocera cucurbitae genome provides insight to the genetic basis of white pupae. G3, Genes/Genomes/Genetics. doi:10.1534/g3.117.040170.
Novel insights into the Elm Yellows phytoplasma genome and into the metagenome of Elm Yellows-infected elms - (Proceedings)
Rosa, C., Margaria, P., Geib, S.M., Scully, E.D. 2017. Novel insights into the Elm Yellows phytoplasma genome and into the metagenome of Elm Yellows-infected elms. Northern Research Station Proceedings. Proceedings of the American Elm Restoration Workshop 2016 p. 49-67. Lewis Center, OH: U.S. Forest Service, Northern Research Station.
Organ-specific transcriptome profiling of metabolic and pigment biosynthesis pathways in the floral ornamental progenitor species Anthurium amnicola Dressler - (Peer Reviewed Journal)
Suzuki, J.Y., Amore, T.D., Calla Zalles, B., Palmer, N.A., Scully, E.D., Sattler, S.E., Sarath, G., Lichty, J.S., Myers, R.Y., Keith, L.M., Matsumoto, T.K., Geib, S.M. 2017. Organ-specific transcriptome profiling of metabolic and pigment biosynthesis pathways in the floral ornamental progenitor species Anthurium amnicola Dressler. Scientific Reports. 7:1596.
Host plant species determines symbiotic bacterial community mediating suppression of plant defenses - (Peer Reviewed Journal)
Chung, S.H., Scully, E.D., Peiffer, M., Geib, S.M., Rosa, C., Hoover, K., Felton, G.W. 2017. Host plant species determines symbiotic bacterial community mediating suppression of plant defenses. Scientific Reports. 7:39690. doi:10.1038/srep39690.
Prediction of a peptidome for the western tarnished plant bug Lygus hesperus Reprint Icon - (Peer Reviewed Journal)
Christie, A.E., Hull, J.J., Richer, J.A., Tassone, E.E., Geib, S.M. 2016. Prediction of a peptidome for the western tarnished plant bug Lygus hesperus. General and Comparative Endocrinology. 243:22-38. doi: 10.1016/j.ygcen.2016.10.008.
Genome of the Asian longhorned beetle, Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface Reprint Icon - (Peer Reviewed Journal)
McKenna, D.D., Scully, E.D., Pauchet, Y., Hoover, K., Kirsch, R., Geib, S.M., Mitchell, R.F., Waterhouse, R.M., Ahn, S., Arsala, D., Childers, A.K., Benoit, J.B., Blackmon, H., Bledsoe, T., Bowsher, J., Busch, A., Calla Zalles, B., Chao, H., Childers, C., Clark, D.J., Cohen, L., Demuth, J.P., Dinh, H., Doddapaneni, H., Dolan, A., Duan, J.J., Dugan, S., Friedrich, M., Glastad, K.M., Goodisman, M.D., Haddad, S., Han, Y., Hughes, D.T., Ioannidis, P., Vargas Jentzsch, I.M., Johnston, J., Jones, J.W., Kuhn, L.A., Lance, D.R., Lee, C., Lee, S.L., Lin, H., Lynch, J.A., Moczek, A.P., Murali, S.C., Muzny, D.M., Nelson, D.R., Palli, S.R., Panfilio, K.A., Pers, D., Poelchau, M.F., Quan, H., Qu, J., Ray, A.M., Rinehart, J.P., Robertson, H.M., Roehrdanz, R.L., Rosendale, A.J., Shin, S., Silva, C., Torson, A., Werren, J.H., Worley, K.C., Yocum, G.D., Zdobnov, E.M., Gibbs, R.A., Richards, S. 2016. Genome of the Asian longhorned beetle, Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology. 17:227. doi:10.1186/s13059-016-1088-8.
The impacts of feeding in a resistant tree on the Asian longhorned beetle (Anoplophora glabripennis) and its gut microbiota - (Abstract Only)
Contrasting diets reveal the metabolic plasticity of the tree-killing beetle, Anoplophora glabripennis (Cerambycidae: Lamiinae) Reprint Icon - (Peer Reviewed Journal)
Mason, C.J., Scully, E.D., Geib, S.M., Hoover, K. 2016. Contrasting diets reveal the metabolic plasticity of the tree-killing beetle, Anoplophora glabripennis (Cerambycidae: Lamiinae). Scientific Reports. 6: 33813. doi:10.1038/srep33813.
Development of chloroplast single nucleotide polymorphisms (SNPs) as a tool towards interspecies typing of Anthurium germplasm - (Peer Reviewed Journal)
Suzuki, J.Y., Geib, S.M., Carlsen, M.M., Henriquez, C.L., Amore, T.D., Sim, S., Matsumoto Brower, T.K., Keith, L.M., Myers, R.Y. 2017. Development of chloroplast single nucleotide polymorphisms (SNPs) as a tool towards interspecies typing of Anthurium germplasm. Acta Horticulturae. 1167:257-270.
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedmann), reveals insights into the biology and adaptive evolution of a highly invasive pest species - (Peer Reviewed Journal)
Papanicolaou, A., Schetelig, M.F., Arensburger, P., Atkinson, P.W., Benoit, J.B., Bourtzis, K., Castanera, P., Cavanaugh, J.P., Chao, H., Childers, C., Curril, I., Dinh, H., Doddaapaneli, H.V., Dolan, A., Dugan, S., Friedrich, M., Gasperi, G., Geib, S.M., Georgakilas, G., Gibbs, R.A., Giers, S.D., Gomulski, L.M., Gonzalez-Guzman, M., Guillem-Amat, A., Han, Y., Hatzigeorgiou, A.G., Hernandez-Crespo, P., Hughes, D.S., Jones, J.W., Karagkouni, D., Koskinioti, P., Lee, S.L., Malacrida, A.R., Manni, M., Mathiopoulos, K., Murali, S.C., Murphy, T.D., Muzny, D.M., Oberhofer, G., Ortego, F., Paraskevopoulou, M.D., Poelchau, M.F., Qu, J., Reczko, M., Robertson, H.M., Rosendale, A.J., Rosselot, A.E., Saccone, G., Salvemini, M., Savini, G., Schreiner, P., Scolari, F., Siciliano, P., Sim, S.B., Tsiamis, G., Urena, E., Vlachos, I.S., Werren, J.H., Wimmer, E.A., Worley, K.C., Zacharopoulou, A., Richards, S., Handler, A.M. 2016. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedmann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology. 17:192. https://doi.org/10.1186/s13059-016-1049-2.
Predation by Flat Bark Beetles (Coleoptera: Silvanidae and Laemophloeidae) on Coffee Berry Borer (Coleoptera: Curculionidae) in Hawaii coffee - ()
Follett, P.A., Kawabata, A., Nelson, R., Asmus, G.M., Burt, J., Gochtke, K., Ewing, C., Gaertner, J., Brill, E., Geib, S.M. 2016. Predation by Flat Bark Beetles (Coleoptera: Silvanidae and Laemophloeidae) on Coffee Berry Borer (Coleoptera: Curculionidae) in Hawaii coffee. Biological Control. 101:152-158.
Genome sequence of Fusarium isolate MYA-4552 from the midgut of Anoplophora glabripennis, an invasive, wood-boring beetle - (Peer Reviewed Journal)
Herr, J.R., Scully, E.D., Geib, S.M., Hoover, K., Geiser, D.M., Tien, M., Carlson, J.E. 2016. Genome sequence of Fusarium isolate MYA-4552 from the midgut of Anoplophora glabripennis, an invasive, wood-boring beetle. Genome Announcements. 4(4):e00544-16.
Larval x-ray irradiation influences protein expression in pupae of the Oriental fruit fly, Bactrocera Dorsalis - (Peer Reviewed Journal)
Chang, C.L., Goodman, C.L., Ringbauer Jr., J.A., Geib, S.M., Stanley, D.W. 2016. Larval x-ray irradiation influences protein expression in pupae of the Oriental fruit fly, Bactrocera Dorsalis. Archives of Insect Biochemistry and Physiology. 92(3):192-209.
Identification of a carboxylesterase associated with resistance to naled in Bactrocera dorsalis (Hendel) - (Peer Reviewed Journal)
Hsu, P., Huang, L., Geib, S.M., Hsu, J. 2016. Identification of a carboxylesterase associated with resistance to naled in Bactrocera dorsalis (Hendel). Pesticide Biochemistry and Physiology. 133:24-31.
Comprehensive annotation of the Glossina pallidipes salivary gland hypertrophy virus from Ethiopian tsetse flies: a proteogenomics approach - (Peer Reviewed Journal)
Abd-Alla, A.M., Kariithi, H.M., Cousserans, F., Parker, N.J., Ince, I.A., Scully, E.D., Boeren, S., Geib, S.M., Mekonnen, S., Vlak, J.M., Parker, A.G., Vresyen, M.J., Bergoin, M. 2016. Comprehensive annotation of the Glossina pallidipes salivary gland hypertrophy virus from Ethiopian tsetse flies: a proteogenomics approach. Journal of General Virology. 97(4):1010-1031. doi: 10.1099/igv.0.000409.
De novo construction of an expanded transcriptome assembly for the western tarnished plant bug, Lygus hesperus Reprint Icon - (Peer Reviewed Journal)
Tassone, E.E., Geib, S.M., Hall, B., Fabrick, J.A., Brent, C.S., Hull, J.J. 2016. De novo construction of an expanded transcriptome assembly for the western tarnished plant bug, Lygus hesperus. Gigascience. 5:6.
Molecular markers detect cryptic predation on coffee berry borer (Coleoptera: Curculionidae) by silvanid and laemophloeid flat bark beetles (Coleoptera: Silvanidae, Laemophloeidae) in coffee beans - (Peer Reviewed Journal)
Sim, S.A., Yoneishi, N., Brill, E., Geib, S.M., Follett, P.A. 2015. Molecular markers detect cryptic predation on coffee berry borer (Coleoptera: Curculionidae) by silvanid and laemophloeid flat bark beetles (Coleoptera: Silvanidae, Laemophloeidae) in coffee beans. Journal of Economic Entomology. 109(1):100-105.
MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA clusters to the Tephritidae - (Peer Reviewed Journal)
Calla Zalles, B., Geib, S.M. 2015. MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA clusters to the Tephritidae. Biomed Central (BMC) Genomics. doi:10.1186/s12864-015-1835-3.
Transcriptome of the egg parasitoid Fopius arisanus, an important biocontrol tool for Tephritid fruit fly suppression - (Peer Reviewed Journal)
Calla Zalles, B., Sim, S., Hall, B., Derego, T., Liang, G., Geib, S.M. 2015. Transcriptome of the egg parasitoid Fopius arisanus, an important biocontrol tool for Tephritid fruit fly suppression. Gigascience. 4:36. DOI:10.1186/s13742-015-0075-4.
An expanded Metrosideros (Myrtaceae) to include Carpolepis and Tepualia based on nuclear genes - (Peer Reviewed Journal)
Pillon, Y., Lucas, E., Johansen, J.B., Sakishima, T., Hall, B., Geib, S.M., Stacy, E.A. 2015. An expanded Metrosideros (Myrtaceae) to include Carpolepis and Tepualia based on nuclear genes. Systematic Botany. 40(3):782-790.
Draft genome sequence of Erwinia tracheiphila, an economically important bacterial pathogen of cucurbits - (Peer Reviewed Journal)
Shapiro, L.R., Scully, E.D., Roberts, D., Straub, T.J., Geib, S.M., Park, J., Stephenson, A.G., Liu, Q., Salaau, R.E., Beattie, G., Gleason, M., De Moraes, C.D., Mescher, M.C., Fleischer, S.G., Kolter, R., Pierce, N., Zhaxybayeva, O. 2015. Draft genome sequence of Erwinia tracheiphila, an economically important bacterial pathogen of cucurbits. Genome Announcements. DOI: 10.1128/genomeA.00482-15.
Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae - (Peer Reviewed Journal)
Sim, S., Calla Zalles, B., Hall, B., Derego, T., Geib, S.M. 2015. Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae. Gigascience. 4:14.
Pupal x-ray irradiation influences protein expression in adults of the oriental fruit fly, Bactrocera dorsalis - (Peer Reviewed Journal)
Chang, C.L., Villalun, M.V., Geib, S.M., Goodman, C.L., Ringbauer Jr., J.A., Stanley, D.W. 2015. Pupal x-ray irradiation influences protein expression in adults of the oriental fruit fly, Bactrocera dorsalis. Journal of Insect Physiology. 76:7-16.
Using genotyping by sequencing (GBS) to identify Loci in Colocasiae esculenta linked to Phytophthora colocasiae resistance - (Peer Reviewed Journal)
Shintaku, M.H., Kimball, H., Brown, A., Miyasaka, S., Sim, S., Geib, S.M. 2016. Using genotyping by sequencing (GBS) to identify Loci in Colocasiae esculenta linked to Phytophthora colocasiae resistance. Acta Horticulturae. 1118:131-138.
A qPCR-based method for detecting parasitism of Fopius arisanus (Sonan) in oriental fruit flies, Bactrocera dorsalis (Hendel) - (Peer Reviewed Journal)
Liang, G., Jang, E.B., Heller, W., Chang, C.L., Chen, J., Geib, S.M. 2015. A qPCR-based method for detecting parasitism of Fopius arisanus (Sonan) in oriental fruit flies, Bactrocera dorsalis (Hendel). Pest Management Science. doi: 10.1002/ps.3976.
Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles - (Peer Reviewed Journal)
Scully, E.D., Geib, S.M., Carlson, J.E., Tien, M., Hoover, K. 2014. Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles. Biomed Central (BMC) Genomics 2014. 15:1096. doi:10.1186/1471-2164-15-1096.
A computer model of insect traps in a landscape - (Peer Reviewed Journal)
Manoukis, N., Hall, B., Geib, S.M. 2014. A computer model of insect traps in a landscape. Scientific Reports. 4:7015.
Characterizing the developmental transcriptome of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae) through comparative genomic analysis with Drosophila melanogaster utilizing modENCODE datasets - (Peer Reviewed Journal)
Geib, S.M., Calla Zalles, B., Hall, B., Hou, S., Manoukis, N. 2014. Characterizing the developmental transcriptome of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae) through comparative genomic analysis with Drosophila melanogaster utilizing modENCODE datasets. Biomed Central (BMC) Genomics. 15:942.
Synonymization of key pest species within the Bactrocera dorsalis species complex (Diptera: Tephritidae): taxonomic changes based on a review of 20 years of integrative morphological, molecular, cytogenetic, behavioral, and c - (Peer Reviewed Journal)
Schutze, M.K., Aketarawong, N., Amornsak, W., Armstrong, K.F., Augustinos, A.A., Barr, N., Bo, W., Bourtzis, K., Boykin, L., Caceres, C., Cameron, S., Chapman, T., Chinvinijkul, S., Chomic, A., De Meyer, M., Drosopoulou, E., Englezou, A., Ekesi, S., Gariou-Papalexiou, A., Geib, S.M., Hailstones, D., Hasanuzzaman, H., Haymer, D., Hee, A., Hendrichs, J., Jessup, A., Ji, Q., Khamis, F., Krosch, M., Leblanc, L., Mahmood, K., Malacrida, A., Mavragani-Tsipidou, P., Mwatawala, M., Nishida, R., Ono, H., Reyes, J., Rubinoff, D., San Jose, M., Shelly, T., Srikachar, S., Tan, K., Thanaphum, S., Ul Haq, I., Vijaysegaran, S., Wee, S., Yesmin, F., Zacharopoulou, A., Clarke, A.R. 2014. Synonymization of key pest species within the Bactrocera dorsalis species complex (Diptera: Tephritidae): taxonomic changes based on a review of 20 years of integrative morphological, molecular, cytogenetic, behavioral, and c. Systematic Entomology. 40:456-471.
Genetic diversity of Bactrocera dorsalis (Diptera: Tephritidae) on the Hawaiian Islands: Implications for an introduction pathway into California - (Peer Reviewed Journal)
Barr, N.B., Ledezma, L.A., Leblanc, L., San Jose, M., Rubinoff, D., Geib, S.M., Fujita, B., Bartels, D., Garza, D., Kerr, P., Hauser, M., Gaimari, S. 2014. Genetic diversity of Bactrocera dorsalis (Diptera: Tephritidae) on the Hawaiian Islands: Implications for an introduction pathway into California. Journal of Economic Entomology. 107(5):1946-1958.
Dietary lufenuron reduces egg hatch and influences protein expression in the fruit fly Bactrocera latifrons (Hendel) - (Peer Reviewed Journal)
Chang, C.L., Cho, I., Li, Q., Geib, S.M., Stanley, D.W. 2014. Dietary lufenuron reduces egg hatch and influences protein expression in the fruit fly Bactrocera latifrons (Hendel). Archives of Insect Biochemistry and Physiology. 86(4):193-208..
Effect of host Bactrocera dorsalis sex on yield and quality of the Parasitoid Fopius arisanus - (Peer Reviewed Journal)
Manoukis, N., Geib, S.M., Vargas, R.I. 2014. Effect of host Bactrocera dorsalis sex on yield and quality of the Parasitoid Fopius arisanus. Biocontrol. 59(4):395-402.
A genomic perspective towards assessing quality of mass-reared SIT flies used in Mediterranean fruit fly eradication in California - (Peer Reviewed Journal)
Calla Zalles, B., Hall, B., Hou, S., Geib, S.M. 2014. A genomic perspective towards assessing quality of mass-reared SIT flies used in Mediterranean fruit fly eradication in California. Biomed Central (BMC) Genomics. 15:98.
Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading Cerambycid beetle - (Peer Reviewed Journal)
Scully, E.D., Hoover, K., Carlson, J.E., Tien, M., Geib, S.M. 2013. Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading Cerambycid beetle. Biomed Central (BMC) Genomics. 14:850.
Comparative metagenomic profiling reveals lignocellulose degrading systems in microbial communities associated with wood-feeding insects - (Peer Reviewed Journal)
Scully, E.D., Geib, S.M., Hoover, K., Tien, M., Tringe, S.G., Barry, K.W., Herr, J.R., Carlson, J.E. 2013. Comparative metagenomic profiling reveals lignocellulose degrading systems in microbial communities associated with wood-feeding insects. PLoS One. 8(9):e73827. doi:10.1371/journal.pone.0073827
An evaluation of the species status of Bactrocera invadens and the Systematics of the Bactrocera dorsalis (Diptera: Tephritidae) complex - (Peer Reviewed Journal)
San Jose, M., Leblanc, L., Geib, S.M., Rubinoff, D. 2013. An evaluation of the species status of Bactrocera invadens and the Systematics of the Bactrocera dorsalis (Diptera: Tephritidae) complex. Annals of the Entomological Society of America. 106(6):684-694.
Sequencing and de novo assembly of the western tarnished plant bug (Lygus hesperus) transcriptome - (Peer Reviewed Journal)
Hull, J.J., Geib, S.M., Fabrick, J.A., Brent, C.S. 2013. Sequencing and de novo assembly of the western tarnished plant bug (Lygus hesperus) transcriptome. PLoS One. 8:1.
Truncated transcripts of nicotinic acetylcholine subunit gene bdalpha6 are associated with spinosad resistance in Bactrocera dorsalis - (Peer Reviewed Journal)
Hsu, J., Feng, H., Wu, W., Mao, C., Geib, S.M., Vontas, J. 2012. Truncated transcripts of nicotinic acetylcholine subunit gene bdalpha6 are associated with spinosad resistance in Bactrocera dorsalis. Journal of Insect Biochemistry and Molecular Biology. 42(10):806-815.
Proteomic analysis of Fusarium solani isolated from the Asian Longhorned beetle, Anoplophora glabripennis - (Peer Reviewed Journal)
Geib, S.M., Hoover, K., Scully, E., Tien, M. 2012. Proteomic analysis of Fusarium solani isolated from the Asian Longhorned beetle, Anoplophora glabripennis. PLoS One. DOI: 10.1371/journal.pone.0032990.
Phylogenetic analysis of Fusarium solani associated with the Asian longhorned beetle, Anoplophora glabripennis - (Peer Reviewed Journal)
Geib, S.M., Scully, E.D., Jimenez-Gasco, M., Carlson, J.E., Tien, M., Hoover, K. 2012. Phylogenetic analysis of Fusarium solani associated with the Asian longhorned beetle, Anoplophora glabripennis. Oriental Insects. 7(4):e32990.doi:10.1371
An Optimized Protocol for Rearing Fopius arisanus, a Parasitoid of Tephritid Fruit Flies - (Peer Reviewed Journal)
Manoukis, N., Geib, S.M., Seo, D.M., Mckenney, M.P., Vargas, R.I., Jang, E.B. 2011. An Optimized Protocol for Rearing Fopius arisanus, a Parasitoid of Tephritid Fruit Flies. Journal of Visualized Experiments. (53). Available: DOI: 10.3791/2901
Sequence of a cellulose-producing bacterium, gluconacetobacter hansenii ATCC 23769 - (Peer Reviewed Journal)
Iyer, P.R., Geib, S.M., Catchmark, J., Kao, T., Tien, M. 2010. Sequence of a cellulose-producing bacterium, gluconacetobacter hansenii ATCC 23769. Journal of Bacteriology. doi:10.1128/JB.00588-10.