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David Fang
Supervisory Research Geneticist (Plants)


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton - (Peer Reviewed Journal)
You, J., Liu, Z., Qi, Z., Ma, Y., Sun, M., Chen, X., Su, L., Niu, H., Peng, Y., Fang, D.D., Luo, X., Zhu, M., Huang, Y., Chang, X. 2023. Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton. Nature Genetics. https://doi.org/10.1038/s41588-023-01530-8.
Analysis of a cotton introgression population derived through multiple generations of random mating in multiple-parents crosses - (Peer Reviewed Journal)
Zeng, L., Hinze, L.L., Fang, D.D., Delhom, C.D., Zhang, J. 2023. Analysis of a cotton introgression population derived through multiple generations of random mating in multiple-parents crosses. Euphytica. 219:101. https://doi.org/10.1007/s10681-023-03213-1.
Raman spectroscopic assessment of fibers and seeds of six cotton genotypes - (Peer Reviewed Journal)
He, Z., Nam, S., Fang, D. 2023. Raman spectroscopic assessment of fibers and seeds of six cotton genotypes. Agricultural and Environmental Letters. 8. Article e20102. https://doi.org/10.1002/ael2.20102.
Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population - (Peer Reviewed Journal)
Thyssen, G.N., Condon, B.D., Hinchliffe, D.J., Zeng, L., Naoumkina, M., Jenkins, J.N., Mccarty,J.C., Sui, R., Madison, C., Li, P., Fang, D.D. Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population. PLOS ONE. 18:e0278696.2023. https://doi.org/10.1371/journal.pone.0278696.
Investigating the interaction between nutrient stress and cotton leafrool dwarf virus infection and the effects on yield loss and symptoms - (Abstract Only)
Schlarbaum, K., Conner, K., Gamble, A.V., Balkcom, K.S., Fang, D.D., Jacobson, A.L. 2023. Investigating the interaction between nutrient stress and cotton leafrool dwarf virus infection and the effects on yield loss and symptoms [abstract]. In Proceedings: 2023 Beltwide Cotton Conferences, New Orleans, LA. January 10-12, 2023. pp 526.
Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population - (Peer Reviewed Journal)
Fang, D.D., Thyssen, G.N., Wang, M.C., Jenkins, J.N., Mccarty Jr, J.C., Jones, D.C. 2022. Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population. Molecular Genetics and Genomics. 298:143-152. https://doi.org/10.1007/s00438-022-01974-3.
A comparative study between trait selections and marker-assisted selections to improve fiber strength in upland cotton - (Peer Reviewed Journal)
Zeng, L., Fang, D.D., Li, P., Delhom, C.D. 2023. A comparative study between trait selections and marker-assisted selections to improve fiber strength in upland cotton. Crop Science. 63:1092-1101. https://doi.org/10.1002/csc2.20881.
Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium - (Peer Reviewed Journal)
Wang, M., Li, J., Qi, Z., Long, Y., Pei, L., Huang, X., Grover, C.E., Du, X., Fang, D.D., Xia, C., Wang, P., Liu, Z., You, J., Tian, X., Ma, Y., Wang, R., Chen, X., He, X., Sun, Y., Tu, L., Jin, S., Zhu, L., Wendel, J.F., Zhang, X. 2022. Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. Nature Genetics. 54:1959-1971. https://doi.org/10.1038/s41588-022-01237-2.
A deletion/duplication in the Ligon-lintless-2 locus induces siRNAs that inhibits cotton fiber cell elongation - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Florane, C.B., Li, P. 2022. A deletion/duplication in the Ligon-lintless-2 locus induces siRNAs that inhibits cotton fiber cell elongation. Plant Physiology. 190(3):1792-1805. https://doi.org/10.1093/plphys/kiac384.
A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance - (Peer Reviewed Journal)
Zhu, Y., Thyssen, G.N., Abdelraheem, A., Teng, Z., Fang, D.D., Jenkins, J.N., Mccarty Jr, J.C., Wedegaertner, T., Hake, K., Zhang, J. 2022. A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance. Theoretical and Applied Genetics. 135:2297-2312. https://doi.org/10.1007/s00122-022-04113-z.
Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Reprint Icon - (Peer Reviewed Journal)
Pei, L., Huang, X., Liu, Z., Tian, X., You, J., Li, J., Fang, D.D., Lindsey, K., Zhu, L., Zhang, X., Wang, M. 2022. Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation. Genome Biology. 23:45. https://doi.org/10.1186/s13059-022-02616-y.
Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton - (Peer Reviewed Journal)
Wang, M., Qi, Z., Thyssen, G.N., Naoumkina, M.A., Jenkins, J.N., McCarty, J.C., Xiao, Y., Li, J., Zhang, X., Fang, D.D. 2022. Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton. Communications Biology. 5:60. https://doi.org/10.1038/s42003-022-03022-7.
Registration of seven recombinant inbred lines of Upland Cotton with improved fiber length or strength - (Peer Reviewed Journal)
Jenkins, J.N., Mccarty Jr, J.C., Hayes, R.W., Wubben, M., Fang, D.D., Thyssen, G.N., Zeng, L., Campbell, B.T., Jones, D.C. 2021. Registration of seven recombinant inbred lines of Upland cotton with improved fiber length or strength. Journal of Plant Registrations. 16:94-99. https://doi.org/10.1002/plr2.20193.
Mapping-by-sequencing the locus of EMS-induced mutation responsible for tufted-fuzzless seed phenotype in cotton - (Peer Reviewed Journal)
Naoumkina, M., Thyssen, G.N., Fang, D.D., Bechere, E., Li, P., Florane, C.B. 2021. Mapping-by-sequencing the locus of EMS-induced mutation responsible for tufted-fuzzless seed phenotype in cotton. Molecular Genetics and Genomics. https://doi.org/10.1007/s00438-021-01802-0.
Surface and thermal characterization of cotton fibers of phenotypes differing in fiber length - (Peer Reviewed Journal)
He, Z., Nam, S., Fang, D.D., Cheng, H.N., He, J. 2021. Surface and thermal characterization of cotton fibers of phenotypes differing in fiber length. Polymers. 13(7). Article 994. https://doi.org/10.3390/polym13070994.
A new Ligon-lintless mutant (liy) in upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Bechere, E., Naoumkina, M.A., Fang, D.D. 2020. A new Ligon-lintless mutant (liy) in upland cotton (Gossypium hirsutum L.). Journal of Cotton Science. 24:168-174.
Elucidation of sequence polymorphism in fuzzless-seed cotton lines - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Li, P., Florane, C.B. 2020. Elucidation of sequence polymorphism in fuzzless-seed cotton lines. Molecular Genetics and Genomics. 296(1):193–206. https://doi.org/10.1007/s00438-020-01736-z.
GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents - (Peer Reviewed Journal)
Abdelraheem, A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty, J.C., Wedegaertner, T., Zhang, J. 2020. GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents. Molecular Genetics and Genomics. 296(1):119-129. https://doi.org/10.1007/s00438-020-01733-2.
GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents - (Peer Reviewed Journal)
Stability and transferability assessment of the cotton fiber strength QTL qFS-c7-1 on chromosome A07 - (Peer Reviewed Journal)
Fang, D.D., Zeng, L., Thyssen, G.N., Delhom, C.D., Bechere, E., Jones, D.C., Li, P. 2021. Stability and transferability assessment of the cotton fiber strength QTL qFS-c7-1 on chromosome A07. The Crop Journal. 9(2):380-386. https://doi.org/10.1016/j.cj.2020.06.016.
Application of the cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population - (Peer Reviewed Journal)
Kim, H.J., Delhom, C.D., Fang, D.D., Zeng, L., Jenkins, J.N., Mccarty Jr, J.C., Jones, D.C. 2020. Application of the cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population. Crop Science. 60(5):2266–2279. https://doi.org/10.1002/csc2.20197.
Effects of inter-species chromosome substitution on cottonseed mineral and protein nutrition profiles Reprint Icon - (Peer Reviewed Journal)
He, Z., Zhang, H., Fang, D.D., Zeng, L., Jenkins, J.N., McCarty, J.C. 2020. Effects of inter-species chromosome substitution on cottonseed mineral and protein nutrition profiles. Agronomy Journal. 112:3963-3974. https://doi.org/10.1002/agj2.20264.
QTL analysis of agronomic, fiber quality, and abiotic stress tolerance traits using a pima cotton (Gossypium barbadense L.) recombinant inbred population - (Peer Reviewed Journal)
Abdelraheem, A., Fang, D.D., Dever, J., Zhang, J. 2020. QTL analysis of agronomic, fiber quality, and abiotic stress tolerance traits using a pima cotton (Gossypium barbadense L.) recombinant inbred population. Crop Science. 60(4):1823-1843. https://doi.org/10.1002/csc2.20153.
Mapping and validation of a fiber length QTL on chromosome D11 using two independent F2 populations of upland cotton - (Peer Reviewed Journal)
Naoumkina, M.A., Zeng, L., Fang, D.D., Wang, M., Thyssen, G.N., Florane, C.B., Li, P., Delhom, C.D. 2020. Mapping and validation of a fiber length QTL on chromosome D11 using two independent F2 populations of upland cotton. Molecular Breeding. 40:31. https://doi.org/10.1007/s11032-020-01111-1.
Mapping and validation of a fiber length QTL on chromosome D11 using two independent F2 populations of upland cotton - (Peer Reviewed Journal)
Naoumkina, M.A., Zeng, L., Fang, D.D., Wang, M., Thyssen, G.N., Florane, C.B., Li, P., Delhom, C.D. 2020. Mapping and validation of a fiber length QTL on chromosome D11 using two independent F2 populations of upland cotton. Molecular Breeding. 40:31. https://doi.org/10.1007/s11032-020-01111-1.
Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton - (Peer Reviewed Journal)
Li, Z., Wang, P., You, C., Yu, J., Zhang, X., Yan, F., Ye, Z., Shen, C., Li, B., Guo, K., Liu, N., Thyssen, G.N., Fang, D.D., Lindsey, K., Zhang, X., Wang, M., Tu, L. 2020. Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton. New Phytologist. 226:1738-1752. https://doi.org/10.1111/nph.16468.
Evaluation and genome-wide association study of Verticillium wilt resistance in a MAGIC population derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents - (Peer Reviewed Journal)
Zhang, J., Abdelraheem, A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty Jr, J.C., Wedegaertner, T. 2019. Evaluation and genome-wide association study of Verticillium wilt resistance in a MAGIC population derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents. Euphytica. 216:9. https://doi.org/10.1007/s10681-019-2547-6.
An EMS-induced mutation in a tetratricopeptide repeat-like superfamily protein gene (Ghir_A12G008870) on chromosome A12 is responsible for the liy short fiber phenotype in cotton Reprint Icon - (Peer Reviewed Journal)
Fang, D.D., Naoumkina, M.A., Thyssen, G.N., Bechere, E., Li, P., Florane, C.B. 2020. An EMS-induced mutation in a tetratricopeptide repeat-like superfamily protein gene (Ghir_A12G008870) on chromosome A12 is responsible for the liy short fiber phenotype in cotton. Journal of Theoretical and Applied Genetics. 133(1):271-282. https://doi.org/10.1007/s00122-019-03456-4.
Evaluation of genomic selection methods for predicting fiber quality traits in upland cotton - (Peer Reviewed Journal)
Islam, M.S., Fang, D.D., Jenkins, J.N., Guo, J., Mccarty Jr, J.C., Jones, D.C. 2019. Evaluation of genomic selection methods for predicting fiber quality traits in upland cotton. Molecular Genetics and Genomics. 295:67-69. https://doi.org/10.1007/s00438-019-01599-z.
Feasibility assessment of phenotyping cotton fiber maturity using infrared spectroscopy and algorithms for genotyping analyses - (Peer Reviewed Journal)
Kim, H.J., Liu, Y., Fang, D.D., Delhom, C.D. 2019. Feasibility assessment of phenotyping cotton fiber maturity using infrared spectroscopy and algorithms for genotyping analyses. Journal of Cotton Research. 2:8. https://doi.org/10.1186/s42397-019-0027-0.
Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton - (Peer Reviewed Journal)
Hu, Y., Chen, J., Fang, L., Zhang, Z., Ma, W., Niu, Y., Ju, R., Zhao, T., Fang, D.D., Zhang, T., Lian, J., Baruch, K., Liu, X., Ruan, Y. 2019. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton. Nature Genetics. 51:739-748. https://doi.org/10.1038/s41588-019-0371-5.
A novel variant of Gh_D02G0276 is required for Root-Knot nematode resistance on chromosome 14 in Upland Cotton - (Peer Reviewed Journal)
Wubben, M., Thyssen, G.N., Callahan, F.E., Fang, D.D., Deng, D.D., Mccarty Jr, J.C., Li, P., Islam, M.S., Jenkins, J.N. 2019. A novel variant of Gh_D02G0276 is required for Root-Knot nematode resistance on chromosome 14 in Upland Cotton. Theoretical and Applied Genetics. 2019)132:1425–1434. https://doi.org/10.1007/s00122-019-03289-1.
Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty, J.C., Florane, C.B. 2019. Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population. BMC Genomics. 20:112. https://doi.org/10.1186/s12864-019-5427-5.
Genomic insights into genetic divergences between two cultivated tetraploid cottons. - (Peer Reviewed Journal)
Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Thyssen, G.N., Jenkins, J.N., McCarty, J.C., Zeng, L., Campbell, B.T., Delhom, C.D., Islam, M.S., Li, P., Jones, D.C., Condon, B.D., Fang, D.D. 2018. Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.). Journal of Theoretical and Applied Genetics. 132:989-999. https://doi.org/10.1007/s00122-018-3254-8.
General description of cotton - ()
Fang, D.D. 2018. General description of cotton. Cotton Fiber: Physics, Chemistry and Biology. pg. 1-11. https://doi.org/10.1007/978-3-030-00871-0_1.
Cotton fiber genes and stable quantitative trait loci - ()
Fang, D.D. 2018. Cotton fiber genes and stable quantitative trait loci. Cotton Fiber: Physics, Chemistry and Biology. pp. 151-178. https://doi.org/10.1007/978-3-030-00871-0_8.
The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Thyssen, G.N., Naoumkina, M.A., McCarty, J.C., Jenkins, J.N., Florane, C.B., Li, P., Fang, D.D. 2018. The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.). Biomed Central (BMC) Plant Biology. 18:186. https://doi.org/10.1186/s12870-018-1414-2.
Unraveling cotton fiber development using fiber mutants in the post-genomic era - (Peer Reviewed Journal)
Fang, D.D., Naoumkina, M.A., Kim, H.J. 2018. Unraveling cotton fiber development using fiber mutants in the post-genomic era. Crop Science. 58(6):2214-2228. https://doi.org/10.2135/cropsci2018.03.0184.
Genetic control of flame retardancy in white lint cotton (gossypium hirsutum) - (Abstract Only)
Genetic and transcriptomic dissection of the fiber length trait using a cotton (Gossypium hirsutum L.) MAGIC population. - (Abstract Only)
History of cotton fiber bioscience research at USDA-ARS Southern Regional Research Center - (Peer Reviewed Journal)
Fang, D.D., Kim, H.J. 2018. History of cotton fiber bioscience research at USDA-ARS Southern Regional Research Center. Journal of Cotton Science. 22:12-23.
Quantitative trait locus mapping of drought and salt tolerance in as introgressed recombinant inbred line population of upland cotton under the greenhouse and field conditions - (Peer Reviewed Journal)
Abdelraheem, A., Fang, D.D., Zhang, J. 2017. Quantitative trait locus mapping of drought and salt tolerance in as introgressed recombinant inbred line population of upland cotton under the greenhouse and field conditions. Journal of Euphytica. (2018)214:8. https://doi.org/10.1007/s10681-017-2095-x.
A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton - (Abstract Only)
Quantitative trait loci analysis for net ginning energy requirements in upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Bechere, E., Fang, D.D., Kebede, H.A., Hardin Iv, R.G., Islam, M.S., Li, P., Scheffler, J.A. 2017. Quantitative trait loci analysis for net ginning energy requirements in upland cotton (Gossypium hirsutum L.). Euphytica. 213:160-171. https://doi.org/10.1007/s10681-017-1951-z.
Genome-wide analysis of gene expression of EMS-induced short fiber mutant Ligon lintless-y (liy) in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Naoumkina, M.A., Bechere, E., Fang, D.D., Thyssen, G.N., Florane, C.B. 2017. Genome-wide analysis of gene expression of EMS-induced short fiber mutant Ligon lintless-y (liy) in cotton (Gossypium hirsutum L.). Genomics. 109:320-329.
Role of xyloglucan in cotton (Gossypium hirsutum L.) fiber elongation of the short fiber mutant Ligon-lintless-2 (Li2) - (Peer Reviewed Journal)
Naoumkina, M.A., Hinchliffe, D.J., Fang, D.D., Florane, C.B., Thyssen, G.N. 2017. Role of xyloglucan in cotton (Gossypium hirsutum L.) fiber elongation of the short fiber mutant Ligon-lintless-2 (Li2). Gene. 626:227-233.
The GhTT2_A07 gene is linked to the brown color and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibers - (Abstract Only)
Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons - (Peer Reviewed Journal)
Fang, L., Gong, H., Lui, C., Zhou, B., Huang, T., Wang, Y., Chen, S., Fang, D.D., Du, X., Chen, H., Chen, J., Wang, S., Wang, Q., Wan, Q. 2017. Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons. Genome Biology. 18:33. doi:10.1186/s13059-017-1167-5.
Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array - (Peer Reviewed Journal)
Hinze, L.L., Hulse-Kemp, A., Wilson, I., Zhu, Q., Llewellyn, D., Taylor, J., Spriggs, A., Fang, D.D., Ulloa, M., Burke, J.J., Giband, M., Lacape, J., Van Deynze, A., Udall, J., Scheffler, J.A., Hague, S., Pepper, A., Frelichowski, J.E., Lawley, C., Jones, D., Percy, R.G., Stelly, D. 2017. Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array. Biomed Central (BMC) Plant Biology. 17:37.
A Gly65Val substitution in an actin, GhACT_LI1, disrupts cell polarity and F-actin organization resulting in dwarf, lintless cotton plants - (Peer Reviewed Journal)
Thyssen, G.N., Fang, D.D., Turley, R.B., Florane, C.B., Li, P., Mattison, C.P., Naoumkina, M.A. 2017. A Gly65Val substitution in an actin, GhACT_LI1, disrupts cell polarity and F-actin organization resulting in dwarf, lintless cotton plants. Plant Journal. 90(1):111-121. https://doi.org/10.1111/tpj.13477.
A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton - (Peer Reviewed Journal)
Islam, M.S., Thyssen, G.N., Jenkins, J.N., Zeng, L., Delhom, C.D., McCarty, J.C., Deng, D.D., Hinchliffe, D.J., Jones, D.C., Fang, D.D. 2016. A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton. BMC Genomics. 17:903. https://doi.org/10.1186/s12864-016-3249-2.
Utility assessment of published microsatellite markers for fiber length and bundle strength QTL in a cotton breeding program - (Peer Reviewed Journal)
Hugie, K.L., Fang, D.D., Smith, C., Li, P., Hinze, L.L., Hague, S.S., Jones, D. 2016. Utility assessment of published microsatellite markers for fiber length and bundle strength QTL in a cotton breeding program. Crop Science. 56:2983-2995 doi:10.2135/cropsci2016.02.0093.
The GhTT2_A07 gene is linked to the brown colour and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibres - (Peer Reviewed Journal)
Hinchliffe, D.J., Condon, B.D., Thyssen, G.N., Naoumkina, M.A., Madison, C.A., Reynolds, M.L., Delhom, C.D., Fang, D.D., Li, P., McCarty Jr, J.C. 2016. The GhTT2_A07 gene is linked to the brown colour and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibres. Journal of Experimental Botany. 67(18):5461-5471.
Unravel the key genes potentially related to high strength of cotton fiber by comparative phenotypic and genomic analyses - ()
Islam, M.S., Fang, D.D., Kim, H.J. 2016. Unravel the key genes potentially related to high strength of cotton fiber by comparative phenotypic and genomic analyses. Atlas of Science. Online.
Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li1) and -2 (Li2) revealed a role for miRNAs and their targets in cotton fiber elongation - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Hinchliffe, D.J., Florane, C.B., Jenkins, J.N. 2016. Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li1) and -2 (Li2) revealed a role for miRNAs and their targets in cotton fiber elongation. BMC Genomics. 17:360. https://doi.org/10.1186/s12864-016-2715-1.
The immature fiber mutant phenotype of cotton (Gossypium hirsutum) is linked to a 22-bp frame-shift deletion in a mitochondria targeted pentatricopeptide repeat gene - (Peer Reviewed Journal)
Thyssen, G.N., Fang, D.D., Zeng, L., Song, X., Delhom, C.D., Condon, T.L., Li, P., Kim, H.J. 2016. The immature fiber mutant phenotype of cotton (Gossypium hirsutum) is linked to a 22-bp frame-shift deletion in a mitochondria targeted pentatricopeptide repeat gene. G3, Genes/Genomes/Genetics. 6:1627-1633.
Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne - (Peer Reviewed Journal)
Islam, M.S., Fang, D.D., Thyssen, G.N., Delhom, C.D., Liu, Y., Kim, H.J. 2016. Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne. Biomed Central (BMC) Plant Biology. 16:36.
Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes - (Peer Reviewed Journal)
Islam, M.S., Zeng, L., Thyssen, G.N., Delhom, C.D., Kim, H.J., Li, P., Fang, D.D. 2016. Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes. Theoretical and Applied Genetics. 129:1071-1086.
Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array - (Abstract Only)
Hinze, L.L., Hulse-Kemp, A., Wilson, I., Zhu, Q., Llewellyn, D., Taylor, J., Spriggs, A., Fang, D.D., Ulloa, M., Burke, J.J., Giband, M., Lacape, J., Van Deynze, A., Udall, J., Scheffler, J.A., Hague, S., Pepper, A., Frelichowski, J.E., Lawley, C., Jones, D., Percy, R.G., Stelly, D. 2016. Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array. In: Proceedings of the Beltwide Cotton Conferences, January 5-7, 2016, New Orleans, Louisiana. 2016 CDROM.
Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set - (Peer Reviewed Journal)
Hinze, L.L., Gazave, E., Gore, M.A., Fang, D.D., Scheffler, B.E., Yu, J., Jones, D.C., Frelichowski, J.E., Percy, R.G. 2016. Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set. Journal of Heredity. 107(3):274-286.
Understanding the cotton fiber elongation process using short fiber mutants, the Ligon lintless-1 (Li1) and -2 (Li2) as an experiment model system - (Abstract Only)
Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.) - (Peer Reviewed Journal)
Hulse-Kemp, A.M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D.D., Frelichowski, J.E., Giband, M., Hague, S., Hinze, L.L., Kochan, K., Riggs, R., Scheffler, J.A., Udall, J.A., Ulloa, M., Wang, S., Zhu, Q., Bag, S.K., Bhardwaj, A., Burke, J.J., Byers, R.L., Claverie, M., Gore, M.A., Harker, D.B., Islam, M.S., Jenkins, J.N., Jones, D.C., Lacape, J., Llewellyn, D.J., Percy, R.G., Pepper, A.E., Poland, J.A., Rai, K., Sawant, S.V., Singh, S., Spriggs, A., Taylor, J.M., Wang, F., Yourstone, S.M., Zheng, X., Lawley, C.T., Ganal, M.W., Van Deynze, A., Wilson, L.W., Stelly, D.M. 2015. Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.). Genes, Genomes, Genetics. 5:1187-1209. doi:10.1534/g3.115.018416.
Mapping-by-sequencing of Ligon-lintless-1 (Li1) reveals a cluster of neighboring genes with correlated expression in developing fibers of Upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Thyssen, G.N., Fang, D.D., Turley, R.B., Florane, C.B., Li, P., Naoumkina, M.A. 2015. Mapping-by-sequencing of Ligon-lintless-1 (Li1) reveals a cluster of neighboring genes with correlated expression in developing fibers of Upland cotton (Gossypium hirsutum L.). Journal of Theoretical and Applied Genetics. 128:1703-1712.
BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping - (Peer Reviewed Journal)
Hulse-Kemp, A.M., Hamid, A., Stoffel, K., Pepper, A.E., Saski, C., Scheffler, B.E., Fang, D.D., Chen, Z., Van Deynze, A., Zheng, X., Stelly, D.M. 2015. BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping. Genes, Genomes, and Genomics. 5:1095-1105. doi:10.1534/g3.115.017749/-/DC1.
Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta - (Peer Reviewed Journal)
Kim, H.J., Hinchliffe, D.J., Triplett, B.A., Chen, Z.J., Stelly, D.M., Yeater, K.M., Moon, H.S., Gilbert, M.K., Thyssen, G.N., Turley, R.B., Fang, D.D. 2015. Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta. PLoS ONE. 10(4):e0125046.
RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li1) and – 2 (Li2) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D. 2015. RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li1) and – 2 (Li2) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation. Biomed Central (BMC) Plant Biology. 15:65.
Cotton as a World Crop: Origin, History, and Current Status - ()
Lee, J.A., Fang, D.D. 2015. Cotton as a World Crop: Origin, History, and Current Status. Cotton. 1-23, DOI:10.2134/agronmonogr57.2013.0019.
Molecular breeding - ()
Fang, D.D. 2015. Molecular breeding. Cotton. 255-288.
Ginning efficiency - research progress - (Abstract Only)
Bechere, E., Boykin Jr, J.C., Hardin Iv, R.G., Fang, D.D., Islam, M.S. 2015. Ginning efficiency - research progress. National Cotton Council Beltwide Cotton Conference. January 2-5, 2015.
Development of EST-based SNP and indel markers and their utilization in tetraploid cotton genetic mapping - (Peer Reviewed Journal)
Li, X., Gao, W., Guo, H., Zhang, X., Fang, D.D., Lin, Z. 2014. Development of EST-based SNP and indel markers and their utilization in tetraploid cotton genetic mapping. Biomed Central (BMC) Genomics. 15:1046.
A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum interspecific populations and Gossypium hirsutum x Gossypium barbadense populations - (Peer Reviewed Journal)
Said, J.I., Song, M., Fang, D.D., Zhang, J. 2014. A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum interspecific populations and Gossypium hirsutum x Gossypium barbadense populations. Molecular Genetics and Genomics. DOI 10.1007/s00438-014-0963-9.
Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection - (Peer Reviewed Journal)
Hinze, L.L., Fang, D.D., Gore, M.A., Scheffler, B.E., Yu, J., Frelichowski, J.E., Percy, R.G. 2015. Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection. Theoretical and Applied Genetics. 128(2):313-327.
Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. x G. barbadense L.) RIL population - (Peer Reviewed Journal)
Yu, J., Ulloa, M., Hoffman, S.M., Kohel, R.J., Pepper, A.E., Fang, D.D., Percy, R.G., Burke, J.J. 2014. Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. x G. barbadense L.) RIL population. Molecular Genetics and Genomics. 289:1347-1367.
Detection, validation, and application of genotyping-by-sequencing based single nucleotide polymorphisms in upland cotton - (Peer Reviewed Journal)
Islam, M.S., Thyssen, G.N., Jenkins, J.N., Fang, D.D. 2014. Detection, validation, and application of genotyping-by-sequencing based single nucleotide polymorphisms in upland cotton. The Plant Genome. 8(1):1-10.
Ginning efficiency in upland cotton - a value-added trait in cotton improvement - (Abstract Only)
Bechere, E., Boykin Jr, J.C., Hardin Iv, R.G., Fang, D.D., Islam, M.S. 2014. Ginning efficiency in upland cotton - a value-added trait in cotton improvement. ASA-CSSA-SSSA Annual Meeting Abstracts. November 2 - 5, 2014.
Next generation genetic mapping of the Ligon-lintless-2 (Li2) locus in upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Thyssen, G.N., Fang, D.D., Turley, R.B., Florane, C.B., Li, P., Naoumkina, M.A. 2014. Next generation genetic mapping of the Ligon-lintless-2 (Li2) locus in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics. 127:2183-2192.
Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Fang, D.D., Jenkins, J.N., Deng, D.D., McCarty Jr, J.C., Li, P., Wu, J. 2014. Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 15:397.
Independent replication of mitochondrial genes supports the transcriptional program in developing fiber cells of cotton (Gossypium hirsutum L.). - (Peer Reviewed Journal)
Thyssen, G.N., Song, X., Naoumkina, M.A., Kim, H.J., Fang, D.D. 2014. Independent replication of mitochondrial genes supports the transcriptional program in developing fiber cells of cotton (Gossypium hirsutum L.). Gene. 544:41-48.
The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation - ()
Percy, R.G., Frelichowski, J.E., Arnold, M., Campbell, B.T., Dever, J., Fang, D.D., Hinze, L.L., Main, D., Scheffler, J.A., Sheehan, M., Ulloa, M., Yu, J., Yu, J. 2014. The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation. In: Abdurakhmonov, I. Editor. World Cotton Germplasm Resources. Rijeka, Croatia: InTech. 167-201. Available: http://www.intechopen.com/books/world-cotton-germplasm-resources/the-u-s-national-cotton-germplasm-collection-its-contents-preservation-characterization-and-evaluation.
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Hinchliffe, D.J., Florane, C.B., Yeater, K.M., Page, J.J., Udall, J.A. 2014. The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.). PLoS One. 9(3):e90830.
Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength. Reprint Icon - (Peer Reviewed Journal)
Islam, M.S., Zeng, L., Delhom, C.D., Song, X., Kim, H.J., Li, P., Fang, D.D. 2014. Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength. Molecular Breeding. 34:373-384.
Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton - (Abstract Only)
Nichols, R.L., Bell, A.A., Creech, R.C., Chee, P.W., Davis, R.F., Erpelding, J.E., Fang, D.D., Gutierrez, O.A., Hake, K.D., Jenkins, J.N., Jones, J., Lawrence, K.L., Mccarty Jr, J.C., Overstreet, C., Roberts, P.A., Robinson, A.F., Sikkens, R.B., Starr, J.L., Stelly, D.M., Stetina, S.R., Stipanovic, R.D., Thaxton, P., Ulloa, M., Wallace, T., Wang, C., Weaver, D.B., Wubben, M., Zhang, J. 2014. Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton. Proceedings of the Beltwide Cotton Conferences. CDROM.
Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton - (Abstract Only)
Nichols, R.L., Bell, A.A., Creech, R.G., Chee, P., Davis, R.F., Erpelding, J.E., Fang, D.D., Gutierrez, O.A., Hake, K.D., Jenkins, J.N., Jones, J.E., Lawrence, K.S., Mccarty Jr, J.C., Overstreet, C., Roberts, P.A., Robinson, A.F., Sikkens, R.B., Starr, J.L., Stelly, D.M., Stetina, S.R., Stipanovic, R.D., Smith-Thaxton, P., Ulloa, M., Wallace, T.P., Wang, C., Weaver, D.B., Wubben, M., Zhang, J. 2014. Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton [abstract]. Beltwide Cotton Conferences, January 6-8, 2014, New Orleans, LA. p. 662.
Functional analyses of cotton (Gossypium hirsutum L.) immature fiber (im) mutant infer that fiber cell wall development is associated with stress responses - (Peer Reviewed Journal)
Kim, H.J., Tang, Y., Moon, H.S., Delhom, C.D., Fang, D.D. 2013. Functional analyses of cotton (Gossypium hirsutum L.) immature fiber (im) mutant infer that fiber cell wall development is associated with stress responses. Biomed Central (BMC) Genomics. 14,889.
Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton - (Peer Reviewed Journal)
Fang, H., Zhou, H., Sanogo, S., Lipka, A.E., Fang, D.D., Percy, R.G., Hughs, S.E., Jones, D.C., Gore, M.A., Zhang, J. 2014. Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton. Molecular Breeding. 33:709-720.
Linkage map construction and QTL analysis of agronomic and fiber quality traits in cotton Reprint Icon - (Peer Reviewed Journal)
Gore, M.A., Fang, D.D., Poland, J.A., Zhang, J., Percy, R.G., Cantrell, R.G., Thyssen, G.N. 2014. Linkage map construction and QTL analysis of agronomic and fiber quality traits in cotton. The Plant Genome. 7(1):1-10.
Genetic mapping of non-target-site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Thyssen, G.N., McCarty, J.C., Li, P., Jenkins, J.N., Fang, D.D. 2014. Genetic mapping of non-target-site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.). Molecular Breeding. 33:341-348.
A transcript profiling approach reveals an abscisic acid-specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Gilbert, M.K., Bland, J.M., Shockey, J.M., Cao, H., Hinchliffe, D.J., Fang, D.D., Naoumkina, M.A. 2013. A transcript profiling approach reveals an abscisic acid-specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.). PLoS One. 8(9):e75268.
A transcript profiling approach reveals an abscisic acid-specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Gilbert, M.K., Bland, J.M., Shockey, J.M., Cao, H., Hinchliffe, D.J., Fang, D.D., Naoumkina, M.A. 2013. A transcript profiling approach reveals an abscisic acid-specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.). PLoS One. 8(9):e75268.
Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li1) Reprint Icon - (Peer Reviewed Journal)
Gilbert, M.K., Turley, R.B., Kim, H.J., Li, P., Thyssen, G.N., Tang, Y., Delhom, C.D., Naoumkina, M.A., Fang, D.D. 2013. Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li1). Biomed Central (BMC) Genomics. 14:403.
Comparative transcriptome analysis of short fiber mutants ligon-lintless 1 and 2 reveals common mechanisms pertinent to fiber elongation in cotton (Gossypium hirsutum L.) Reprint Icon - (Peer Reviewed Journal)
Gilbert, M.K., Kim, H.J., Tang, Y., Naoumkina, M.A., Fang, D.D. 2014. Comparative transcriptome analysis of short fiber mutants ligon-lintless 1 and 2 reveals common mechanisms pertinent to fiber elongation in cotton (Gossypium hirsutum L.). PLoS One. 9:e95554.
Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 (Li2) mutant cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Naoumkina, M.A., Hinchliffe, D.J., Turley, R.B., Bland, J.M., Fang, D.D. 2013. Integrated metabolomics and genomics analysis provides new insights into the fiber elongation process in Ligon lintless-2 (Li2) mutant cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 14:155,_DOI:10.1186/1471-2164-14-155.
A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries - (Peer Reviewed Journal)
Fang, D.D., Hinze, L.L., Percy, R.G., Li, P., Deng, D.D., Thyssen, G.N. 2013. A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries. Euphytica. 191:391-401.
Molecular diversity among G. hirsutum accessions in the Gossypium Diversity Reference Set - (Abstract Only)
A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check - (Peer Reviewed Journal)
Blenda, A., Fang, D.D., Rami, J., Garsmeur, O., Luo, F., Lacape, J. 2012. A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check. PLoS One. 7(9):e45739.
Molecular markers associated with the immature fiber (im) gene affecting the degree of fiber cell wall thickening in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Kim, H.J., Moon, H.S., Delhom, C.D., Zeng, L., Fang, D.D. 2013. Molecular markers associated with the immature fiber (im) gene affecting the degree of fiber cell wall thickening in cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics. 126:23-31.
Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map - (Peer Reviewed Journal)
Fang, D.D., Yu, J. 2012. Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map. Journal of Cotton Science. 16:229-248.
Cloning and expression analysis of novel Aux/IAA family genes in Gossypium hirsutum - (Peer Reviewed Journal)
Han,, X.Y., Xu, X.Y., Fang, D.D., Zhang, T.Z., Guo, W.Z. 2012. Cloning and expression analysis of novel Aux/IAA family genes in Gossypium hirsutum. Gene. 503:83-91.
Development of a core set of SSR markers for the characterization of Gossypium germplasm - (Peer Reviewed Journal)
Yu, J., Fang, D.D., Kohel, R.J., Ulloa, M., Hinze, L.L., Percy, R.G., Zhang, J., Chee, P., Scheffler, B.E., Jones, D.C. 2012. Development of a core set of SSR markers for the characterization of Gossypium germplasm. Euphytica. 187(2):203-213.
Genetic diversity in the U.S. Cotton Germplasm Collection as revealed by SSR markers - (Abstract Only)
Molecular tools for contemporary cotton breeding - (Abstract Only)
Yu, J., Fang, D.D., Abdurakhmonov, I.Y., Yu, S., Percy, R.G. 2012. Molecular tools for contemporary cotton breeding [abstract]. Proceedings of the Plant and Animal Genome Conference XX, January 14-18, 2012, San Diego, California. W543.
Cloning and characterization of homeologous cellulose synthase catalytic subunit 2 genes from allotetraploid cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Kim, H.J., Triplett, B.A., Zhang, H., Lee, M., Hinchliffe, D.J., Li, P., Fang, D.D. 2012. Cloning and characterization of homeologous cellulose synthase catalytic subunit 2 genes from allotetraploid cotton (Gossypium hirsutum L.). Gene. 494(2):181-189.
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome - (Peer Reviewed Journal)
Yu, J., Kohel, R.J., Fang, D.D., Cho, J., Van Deynze, A., Ulloa, M., Hoffman, S.M., Pepper, A.E., Stelly, D.M., Jenkins, J.N., Saha, S., Kumpatla, S.P., Shah, M.R., Hugie, W.V., Percy, R.G. 2012. A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genes, Genomes, Genetics. 2:43-58.
A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Hinchliffe, D.J., Turley, R.B., Naoumkina, M.A., Kim, H.J., Tang, Y., Yeater, K.M., Li, P., Fang, D.D. 2011. A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 12:445.
Registration of the TM-1/NM24016 Cotton Recombinant Inbred Mapping Population - (Peer Reviewed Journal)
Gore, M.A., Percy, R.G., Zhang, J., Fang, D.D., Cantrell, R.G. 2012. Registration of the TM-1/NM24016 cotton recombinant inbred mapping population. Journal of Plant Registrations. 6(1). 1:4.
Improving Cotton (Gossypium hirsutum L.) Plant Resistance to Reniform Nematodes by Pyramiding Ren1 and Ren2 - (Peer Reviewed Journal)
Fang, D.D., Stetina, S.R. 2011. Improving Cotton (Gossypium hirsutum L.) Plant Resistance to Reniform Nematodes by Pyramiding Ren1 and Ren2. Plant Breeding. 130:673-678.
Elevated growing degree days influence transition stage timing during cotton (Gossypium hirsutum L.) fiber development and result in increased fiber strength - (Peer Reviewed Journal)
Hinchliffe, D.J., Meredith Jr, W.R., Delhom, C.D., Thibodeaux, D.P., Fang, D.D. 2011. Elevated growing degree days influence transition stage timing during cotton (Gossypium hirsutum L.) fiber development and result in increased fiber strength. Crop Science. 51:1683-1692. DOI: 10.2135/cropsci2010.10.0569.
Are Renari from Gossypium aridum and Renlon from G. longicalyx Duplicate Genes? - (Abstract Only)
Fang, D.D., Stetina, S.R. 2011. Are Renari from Gossypium aridum and Renlon from G. longicalyx Duplicate Genes?. National Cotton Council Beltwide Cotton Conference. CD ROM.
Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection - (Abstract Only)
Percy, R.G., Fang, D.D., Hinze, L.L., Yu, J., Frelichowski, J.E., Scheffler, B.E., Gore, M.A. 2011. Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. 2011 CDROM.
Regulation of auxin on secondary cell wall cellulose biosynthesis in developing cotton fibers - (Abstract Only)
Functional analysis of Gossypium hirsutum cellulose synthase catalytic subunit 4 promoter in transgenic Arabidopsis and cotton tissues. - (Peer Reviewed Journal)
Kim, H.J., Murai, N., Fang, D.D., Triplett, B.A. 2010. Functional analysis of Gossypium hirsutum cellulose synthase catalytic subunit 4 promoter in transgenic Arabidopsis and cotton tissues. Plant Science. 180(2011);323-332.
Development of core SSR markers for Gossypium germplasm characterization - (Abstract Only)
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Zhang, J., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Development of core SSR markers for Gossypium germplasm characterization [abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conferences, January 4-7, 2010, New Orleans, Louisiana. p. 811. CDROM.
Portable DNA markers tailored for systematic characterization of Gossypium germplasm - (Abstract Only)
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Portable DNA markers tailored for systematic characterization of Gossypium germplasm [abstract]. In: Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. P149.
A New SNP Haplotype associated with blue disease resistance gene in cotton (Gossypium hirsutum L.) - (Peer Reviewed Journal)
Fang, D.D., Xiao, J., Canci, P.C., Cantrell, R.G. 2009. A New SNP Haplotype associated with blue disease resistance gene in cotton (Gossypium hirsutum L.). Journal of Theoretical and Applied Genetics. 120:943-953.
Mapping a reniform nematode (Rotylenchulus reniformis) resistance locus introgressed from Gossypium aridum into upland cotton (G. hirsutum) - (Abstract Only)
A SNP Haplotype Associated with a gene resistant to Xanthomonas axonopodis pv. malvacearum in Upland Cotton (Gossyium hirsutum L.) - (Peer Reviewed Journal)
Xiao, J., Fang, D.D., Bhatti, M., Hendrix, B., Cantrell, R.G. 2009. A SNP Haplotype Associated with a gene resistant to Xanthomonas axonopodis pv. malvacearum in Upland Cotton (Gossyium hirsutum L.). Molecular Breeding.25(4):593-602
Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance locus (Ren_ari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum) - (Peer Reviewed Journal)
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O., Scheffler, J.A. 2009. Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance locus (Ren_ari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum). Theoretical and Applied Genetics. 120:139-150
Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum) - (Abstract Only)
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O.A., Scheffler, J.A. 2009. Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum). Journal of Nematology. 41(4):375-376.
New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement - (Peer Reviewed Journal)
Xiao, J., Wu, K., Fang, D.D., Stelley, D.M., Yu, J., Cantrell, R.G. 2009. New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement. Journal of Cotton Science. 13(2):75-157