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United States Department of Agriculture

Agricultural Research Service

Related Topics

Caird E Rexroad
National Program Leader


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients Reprint Icon -
Danzmann, R., Kocmarek, A., Notman, J., Rexroad III, C.E., Palti, Y. 2016. Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients. Biomed Central (BMC) Genomics. 17:1-18. doi: 10.1186/s12864-016-2363-5.
Development and validation of a SNP panel for parentage assignment in rainbow trout -
Liu, S., Palti, Y., Gao, G., Rexroad III, C.E. 2015. Development and validation of a SNP panel for parentage assignment in rainbow trout. Aquaculture. 452:178–182. doi: 10.1016/j.aquaculture.2015.11.001.
A panel of single nucleotide ploymorphism for parentage assignment in rainbow trout -
Liu, S., Palti, Y., Gao, G., Rexroad Iii, C.E. 2016. A panel of single nucleotide ploymorphism for parentage assignment in rainbow trout. Aquaculture America Conference. Paper No. A-345.
Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing -
Palti, Y., Vallejo, R.L., Gao, G., Liu, S., Hernandenz, A., Rexroad III, C.E., Wiens, G.D. 2015. Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing. PLoS One. 10(9):e0138435. doi: 10.1371/journal.pone.0138435.
Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout -
Salem, M., Paneru, B., Al-Tobasei, R., Abdouni, F., Thorgaard, G., Rexroad III, C.E., Yao, J. 2015. Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout. PLoS One. 10(3):1-27. DOI:10.1371/journal.pone.0121778.
Identification of single nucleotide polymorphism markers associated with cortisol response to crowding in Rainbow Trout -
Liu, S., Vallejo, R.L., Gao, G., Palti, Y., Weber, G.M., Hernandez, A., Rexroad III, C.E. 2015. Identification of single nucleotide polymorphism markers associated with cortisol response to crowding in Rainbow Trout. Marine Biotechnology. DOI: 10.1007\s10126-015-9621-4.
The development and characterization of a 57K SNP array for Rainbow Trout -
Palti, Y., Gao, G., Moen, T., Liu, S., Kent, M., Sigbjorn, L., Miller, M., Rexroad Iii, C.E. 2015. The development and characterization of a 57K SNP array for Rainbow Trout. Plant and Animal Genome Conference. P354.
Development of a Fluidigm SNP panel for genetic analysis in rainbow trout -
Liu, S., Rexroad Iii, C.E., Gao, G., Palti, Y. 2015. Development of a Fluidigm SNP panel for genetic analysis in rainbow trout. Plant and Animal Genome Conference. P287.
The development and characterization of a 57K SNP array for rainbow trout -
Palti, Y., Gao, G., Moen, T., Liu, S., Kent, M., Sigbjorn, L., Miller, M., Rexroad III, C.E. 2015. The development and characterization of a 57K SNP array for rainbow trout. Molecular Ecology Resources. 15:662-672.
Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes -
Ali, A., Thorgaard, G., Rexroad III, C.E., Yao, J., Salem, M. 2014. Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes. Frontiers in Livestock Genomics. 5:348. DOI: 10.3389/fgene.2014.00348.
Complete genome sequence of Flavobacterium psychrophilum strain CSF259-93 used to select rainbow trout for increased genetic resistance against bacterial cold water disease -
Wiens, G.D., Lapatra, S.E., Welch, T.J., Rexroad III, C.E., Call, D.R., Cain, K.E., Lafrentz, B.R., Vaisvil, B., Schmitt, D.P., Kapatral, V. 2014. Complete genome sequence of Flavobacterium psychrophilum strain CSF259-93 used to select rainbow trout for increased genetic resistance against bacterial cold water disease. Genome Announcements. 2(5):e00889-14. DOI:10.1128/genomeA.0089-14.
Mapping and expression of candidate genes for development rate in rainbow trout (Oncorhynchus mykiss) -
Hale, M.C., Colletii, J., Gahr, S., Scardina, J., Thrower, F., Harmon, M., Carter, M., Phillips, R.B., Thorgaard, G., Rexroad III, C.E., Nichols, K. 2014. Mapping and expression of candidate genes for development rate in rainbow trout (Oncorhynchus mykiss). Journal of Heredity 2014:105(4):506–520
The development and characterization of a 57K SNP Chip for rainbow trout -
Palti, Y., Gao, G., Moen, T., Liu, S., Kent, M., Sigbjorn, L., Miller, M., Rexroad Iii, C.E. 2014. The development and characterization of a 57K SNP Chip for rainbow trout [abstract]. World Congress of Genetics Applied in Livestock Production. Paper No. 268.
RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout -
Liu, S., Gao, G., Palti, Y., Cleveland, B.M., Weber, G.M., Rexroad III, C.E. 2014. RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout. PLoS One. 9(2). e88492. DOI: 10.1371/journal.pone.0088492.
Transcriptome assembly and digital gene expression atlas of the rainbow trout -
Paneru, B., Abdouni, F., Thorgaard, G.H., Palti, Y., Rexroad III, C.E., Yao, J., Salem, M. 2014. Transcriptome assembly and digital gene expression atlas of the rainbow trout. Plant and Animal Genome Conference. 249.
Gene expression dynamics during embryonic development in rainbow trout -
Ma, H., Hostuttler, M.A., Wie, H., Rexroad III, C.E., Yao, J. 2014. Gene expression dynamics during embryonic development in rainbow trout. Plant and Animal Genome Conference. 539.
Characterization of rainbow trout (Oncorhynchus mykiss) spleen transcriptome and identification of immune-related genes -
Ali, A., Elmusharaf, R., Palti, Y., Rexroad III, C.E., Yao, J., Salem, M. 2014. Characterization of rainbow trout (Oncorhynchus mykiss) spleen transcriptome and identification of immune-related genes. Plant and Animal Genome Conference. 354.
Use of RADs to identify canidate genes for response to crowding stress in rainbow trout -
Rexroad III, C.E., Liu, S., Vallejo, R.L., Gao, G., Palti, Y., Weber, G.M. 2014. Use of RADs to identify canidate genes for response to crowding stress in rainbow trout. Aquaculture America Conference. 168.
Identification of positional candidate genes for response to crowding stress in rainbow trout -
Liu, S., Rexroad III, C.E., Vallejo, R.L., Gao, G., Palti, Y., Weber, G.M. 2014. Identification of positional candidate genes for response to crowding stress in rainbow trout. Plant and Animal Genome Conference. 148.
Validation of linkage between BCWD resistance and spleen size QTL on Omy19 in rainbow trout: Pleiotropy versus linkage -
Vallejo, R.L., Palti, Y., Liu, S., Marancik, D.P., Welch, T.J., Leeds, T.D., Evenhuis, J., Rexroad III, C.E., Wiens, G.D. 2014. Validation of linkage between BCWD resistance and spleen size QTL on Omy19 in rainbow trout: Pleiotropy versus linkage. Plant and Animal Genome Conference. 361.
A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids Reprint Icon -
Palti, Y., Gao, G., Miller, M., Vallejo, R.L., Wheeler, P.A., Quillet, E., Yao, J., Thorgaard, G.H., Salem, M., Rexroad III, C.E. 2014. A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids. Molecular Ecology Resources. 14(3):588-596. DOI:10.1111/1755-0998.12204.
Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum Reprint Icon -
Vallejo, R.L., Palti, Y., Evenhuis, J., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2014. Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum. Marine Biotechnology. 16(3) 349-360. DOI 10.1007/s10126-013-9553-9.
Genotype-by-environment interaction of growth traits in rainbow trout (Oncorhynchus mykiss): A continental scale study -
Sae-Lim, P., Kasue, A., Mulder, H.A., Martin, K.E., Barfoot, A.J., Parsons, J.E., Davidson, J., Rexroad III, C.E., Van Arendonk, J.M., Komen, H. 2013. Genotype-by-environment interaction of growth traits in rainbow trout (Oncorhynchus mykiss): A continental scale study. Journal of Animal Science. 91:5572-5581. DOI:10.2527/jas2012-5949.
Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss) -
Wang, L., Tripurani, S.K., Wanna, W., Rexroad III, C.E., Yao, J. 2013. Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss). Reproductive Biology and Endocrinology. 11:86.DOI: 10.1186/1477-7827-11-86.
Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: Identification of QTL on chromosome Omy19 Reprint Icon -
Wiens, G.D., Vallejo, R.L., Leeds, T.D., Palti, Y., Hadidi, S., Liu, S., Evenhuis, J., Welch, T.J., Rexroad Iii, C.E. 2013. Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: Identification of QTL on chromosome Omy19. PLoS One. 8(10): e75749: DOI: 10.1371/journal.pone.0075749.
Quantitative trait loci affecting response to crowding stress in an F2 generation of rainbow trout produced through phenotypic selection Reprint Icon -
Rexroad III, C.E., Vallejo, R.L., Liu, S., Palti, Y., Weber, G.M. 2013. Quantitative trait loci affecting response to crowding stress in an F2 generation of rainbow trout produced through phenotypic selection. Marine Biotechnology. 15(5): 613-627: DOI 10.1007/s10126-013-9512-5.
Characterization and expression analysis of genes involved in SUMOylation during embryogenesis in rainbow trout (Oncorhynchus mykiss) -
Zang, X., Ma, H., Fu, L., Rexroad III, C.E., Yao, J. 2013. Characterization and expression analysis of genes involved in SUMOylation during embryogenesis in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting. A297.
Big data computing: Building a vision for ARS information management -
James, R.R., Lawrence, C.J., Papiernik, S.K., Van Tassell, C.P., Ahuja, L.R., Baxter, I.R., Cannon, S.B., Lunney, J.K., Rexroad Iii, C.E., Sadler, J., Stanton, T.B., Stephensen, C.B. 2013. Big data computing: Building a vision for ARS information management. USDA. Agricultural Research Service Publication (White Paper).
On-farm performance of rainbow trout (Oncorhynchus mykiss) selectively bred for resistance to bacterial cold water disease: effect of rearing environment on survival phenotype Reprint Icon -
Wiens, G.D., Lapatra, S.E., Welch, T.J., Evenhuis, J., Rexroad III, C.E., Leeds, T.D. 2013. On-farm performance of rainbow trout (Oncorhynchus mykiss) selectively bred for resistance to bacterial cold water disease: effect of rearing environment on survival phenotype. Aquaculture. 388-391:128-136.
Identification and characterization of long non-coding RNAs in rainbow trout eggs -
Wang, J., Ma, H., Rexroad III, C.E., Yao, J. 2013. Identification and characterization of long non-coding RNAs in rainbow trout eggs. Annual International Plant & Animal Genome Conference. P0509.
RNA-seq analysis of stress response in rainbow trout -
Liu, S., Gao, G., Palti, Y., Weber, G.M., Rexroad III, C.E. 2013. RNA-seq analysis of stress response in rainbow trout. Annual International Plant & Animal Genome Conference. P0511.
Mapping QTL for spleen size and BCWD resistance in rainbow trout -
Vallejo, R.L., Palti, Y., Liu, S., Welch, T.J., Leeds, T.D., Evenhuis, J., Rexroad III, C.E., Wiens, G.D. 2013. Mapping QTL for spleen size and BCWD resistance in rainbow trout. Annual International Plant & Animal Genome Conference. P0508.
Evaluation of long-chain n3 fatty acid content in diploid and triploid rainbow trout -
Picklo, M.J., Raatz, S.K., Cleveland, B.M., Rexroad Iii, C.E. 2013. Evaluation of long-chain n3 fatty acid content in diploid and triploid rainbow trout. Federation of American Societies for Experimental Biology Conference. 27:1079.15.
Single nucleotide polymorphism (SNP) discovery in rainbow trout using restriction site associated DNA (RAD) sequencing of doubled haploids and assessment of polymorphism in a population survey -
Palti, Y., Gao, G., Miller, M., Vallejo, R.L., Wheeler, P.A., Quillet, E., Yao, J., Thorgaard, G.H., Salem, M., Rexroad III, C.E. 2013. Single nucleotide polymorphism (SNP) discovery in rainbow trout using restriction site associated DNA (RAD) sequencing of doubled haploids and assessment of polymorphism in a population survey. Annual International Plant & Animal Genome Conference. P0507.
QTL affecting stress response to crowding in a rainbow trout broodstock population Reprint Icon -
Rexroad III, C.E., Vallejo, R.L., Liu, S., Palti, Y., Weber, G.M. 2012. QTL affecting stress response to crowding in a rainbow trout broodstock population . BioMed Central (BMC) Genetics. 13:97. DOI:10.1186/1471-2156-13-97
Field evaluation of rainbow trout selectively bred for resistance to bacterial cold water disease -
Wiens, G.D., Leeds, T.D., Lapatra, S.E., Wilson, C., Cavendar, W., Rexroad III, C.E. 2012. Field evaluation of rainbow trout selectively bred for resistance to bacterial cold water disease. Flavobacterium Meeting. CD-ROM.
Identifying genes affectng stress response in rainbow trout -
Rexroad Iii, C.E., Liu, S., Gao, G., Palti, Y., Weber, G.M., Vallejo, R.L. 2013. Identifying genes affectng stress response in rainbow trout. Aquaculture Conference Proceedings. P0182.
Mapping of QTL for bacterial cold water disease resistance in rainbow trout -
Palti, Y., Vallejo, R.L., Welch, T.J., Evenhuis, J., Leeds, T.D., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2013. Mapping of QTL for bacterial cold water disease resistance in rainbow trout. Aquaculture Conference Proceedings. P0296.
Pathogenic infection confounds induction of the estrogenic biomarker vitellogenin in rainbow trout Reprint Icon -
Burki, R., Krasnov, A., Bettage, K., Rexroad III, C.E., Afanasyev, S., Antikainen, M., Burkhardt-Holm, P., Wahli, T., Segner, H. 2012. Pathogenic infection confounds induction of the estrogenic biomarker vitellogenin in rainbow trout. Journal of Society of Environmental Toxicology and Chemistry. 31(10):2318-2323.
Characterization of the rainbow trout oocyte microRNA transcriptome Reprint Icon -
Ma, H., Hostuttler, M.A., Wei, H., Rexroad III, C.E., Yao, J. 2012. Characterization of the rainbow trout oocyte microRNA transcriptome. PLoS One. 7(6):1-8.
Molecular characterization and expression analysis of Zar1 and Zar1-like genes in rainbow trout -
Lin, C., Wang, L., Hao, M., Hostuttler, M.A., Rexroad III, C.E., Yao, J. 2012. Molecular characterization and expression analysis of Zar1 and Zar1-like genes in rainbow trout. Society for the Study of Reproduction Annual Meeting. 564.
Field evaluation of rainbow trout selectively bred for resistance to bacterial cold water disease -
Wiens, G.D., Leeds, T.D., La Patra, S.E., Wilson, C., Cavendar, W., Rexroad III, C.E. 2012. Field evaluation of rainbow trout selectively bred for resistance to bacterial cold water disease. Flavobacterium Meeting. 126.
RNA-Seq identifies SNP markers for growth traits in rainbow trout Reprint Icon -
Salem, M., Vallejo, R.L., Leeds, T.D., Palti, Y., Liu, S., Sabbagh, A., Rexroad III, C.E., Yao, J. 2012. RNA-Seq identifies SNP markers for growth traits in rainbow trout. PLoS One. 7(5):e36264.
Quantitative trait loci analyses and RNA-seq identify genes affecting stress response in rainbow trout -
Rexroad III, C.E., Liu, S., Gao, G., Palti, Y., Weber, G.M., Vallejo, R.L. 2012. Quantitative trait loci analyses and RNA-seq identify genes affecting stress response in rainbow trout [abstract]. p. 185.
Use of RADs and doubled haploids to identify SNPs in rainbow trout -
Rexroad III, C.E., Salem, M., Miller, M., Yao, J., Gao, G., Liu, S., Thorgaard, G., Palti, Y. 2012. Use of RADs and doubled haploids to identify SNPs in rainbow trout [abstract]. p. 246.
Mapping of QTL for bacterial cold water disease resistance in rainbow trout -
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Gao, G., Liu, S., Rexroad III, C.E., Wiens, G.D. 2012. Mapping of QTL for bacterial cold water disease resistance in rainbow trout [abstract]. International Symposium on Genetics in Aquaculture. p. 354.
Molecular crosstalk between a chemical and a biological stressor and consequences on disease manifestation in rainbow trout -
Molecular crosstalk between a chemical and a biological stressor and consequences on disease manifestation in rainbow trout Reprint Icon -
Burki, R., Krasnov, A., Bettage, K., Rexroad III, C.E., Afanasyev, S., Antikainen, M., Burkhardt-Holm, P., Wahli, T., Segner, H. 2012. Molecular crosstalk between a chemical and a biological stressor and consequences on disease manifestation in rainbow trout. Aquatic Toxicology. 127:2-8.
Analysis of differential gene expression in response to handling and confinement stress in rainbow trout using whole transcriptome RNA-seq -
Liu, S., Gao, G., Castano-Sanchez, C., Palti, Y., Rexroad III, C.E. 2012. Analysis of differential gene expression in response to handling and confinement stress in rainbow trout using whole transcriptome RNA-seq [abstract]. International Symposium on Genetics in Aquaculture. p. 367.
Identification and expression of Smads associated with TGF-beta/activin/nodal signaling pathways in the rainbow trout (Oncorhynuchus mykiss) Reprint Icon -
Gahr, S.A., Weber, G.M., Rexroad Iii, C.E. 2012. Identification and expression of Smads associated with TGF-beta/activin/nodal signaling pathways in the rainbow trout (Oncorhynuchus mykiss). Fish Physiology and Biochemistry Journal. DOI: 10.1007/s10695-012-9611-7.
New in-depth rainbow trout transcriptome reference and digital atlas of gene expression -
Salem, M., Rexroad III, C.E., Thorgaard, G., Yao, J. 2012. New in-depth rainbow trout transcriptome reference and digital atlas of gene expression. Annual International Plant & Animal Genome Conference. W045.
Identification of differentially expressed miRNAs potentially associated with egg quality in rainbow trout (Oncorhynchus mykiss) -
Ma, H., Hostuttler, M.A., Weber, G.M., Rexroad III, C.E., Wei, H., Wang, L., Yao, J. 2012. Identification of differentially expressed miRNAs potentially associated with egg quality in rainbow trout (Oncorhynchus mykiss). Annual International Plant & Animal Genome Conference. W041.
Mapping of QTL for bacterial cold water disease resistance in rainbow trout -
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Liu, S., Rexroad III, C.E., Wiens, G.D. 2012. Mapping of QTL for bacterial cold water disease resistance in rainbow trout. Plant and Animal Genome Conference. P0662.
Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors Reprint Icon -
Sanchez, C., Weber, G.M., Gao, G., Cleveland, B.M., Yao, J., Rexroad III, C.E. 2011. Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors. Biomed Central (BMC) Genomics. 12:626.
Detection of quantitative trait loci (QTL) for resistance to bacterial cold water disease and spleen size in rainbow trout -
Palti, Y., Vallejo, R.L., Welch, T.J., Evenhuis, J., Leeds, T.D., Liu, S., Rexroad III, C.E., Wiens, G.D. 2011. Detection of quantitative trait loci (QTL) for resistance to bacterial cold water disease and spleen size in rainbow trout. Aquaculture America Conference. 4.
A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of synteny with model fish genomes Reprint Icon -
Palti, Y., Genet, C., Gao, G., Hu, Y., You, F., Boussaha, M., Rexroad III, C.E., Luo, M. 2012. A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of synteny with model fish genomes. Marine Biotechnology. 14:343-357.
A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the hree-spined stickleback (Gasterosteus aculeatus) Reprint Icon -
Liu, S., Rexroad III, C.E., Couch, C.R., Cordes, J.R., Reece, K.S., Sullivan, C.V. 2011. A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the hree-spined stickleback (Gasterosteus aculeatus). Marine Biotechnology. 14(2):237-244.
Next-generation sequencing reveals a conserved haplotype controlling parallel adaptation in geographically distant rainbow trout (Oncorhynchus mykiss) populations Reprint Icon -
Miller, M.R., Brunelli, J.P., Wheeler, P.A., Liu, S., Rexroad III, C.E., Palti, Y., Doe, C.Q., Thorgaard, G.H. 2012. Next-generation sequencing reveals a conserved haplotype controlling parallel adaptation in geographically distant rainbow trout (Oncorhynchus mykiss) populations. Molecular Ecology. 21(2):237-249.
A first generation integrated map of the rainbow trout genome Reprint Icon -
Palti, Y., Genet, C., Luo, M., Charlet, A., Gao, G., Hu, Y., Castano-Sanchez, C., Yao, J., Vallejo, R.L., Rexroad III, C.E. 2011. A first generation integrated map of the rainbow trout genome. Biomed Central (BMC) Genomics. 12:180. DOI: 10.1186/1471-2164-12-180.
Importin a8 (KPNA7) interacts with STL3, an oocyte-specific protein in rainbow trout (Oncorhynchus mykiss) -
Wang, L., Ma, H., Rexroad III, C.E., Yao, J. 2011. Importin a8 (KPNA7) interacts with STL3, an oocyte-specific protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting. Paper No. 301-400.
Importin alpha8 (KPNA7) interacts with STL3, an oocyte-specific protein in rainbow trout (Oncorhynchus mykiss) -
Wag, L., Ma, H., Yao, J., Rexroad III, C.E. 2012. Importin alpha8 (KPNA7) interacts with STL3, an oocyte-specific protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting. 152.
Detection of quantitative trait loci affecting response to crowding stress in rainbow trout -
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y., Weber, G.M. 2011. Detection of quantitative trait loci affecting response to crowding stress in rainbow trout. Gordon Research Conference Proceedings: Quantitative genetics & Genomics: From Genome to Phenotype. p. 151.
Genomic analysis of the stress response of rainbow trout -
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano Sanchez, C., Yao, J., Palti, Y., Weber, G.M. 2011. Genomic analysis of the stress response of rainbow trout. Aquaculture America Conference. 272.
A microsatellite linkage map of striped bass (Morone saxatilis) -
Liu, S., Rexroad III, C.E., Couch, C.R., Cordes, J.R., Reece, K.S., Sullivan, C.V. 2011. A microsatellite linkage map of striped bass (Morone saxatilis) [abstract]. Plant and Animal Genome Conference. p. 628.
MicroRNA transcriptome profile of rainbow trout (Oncorhynchus mykiss) egg -
Ma, H., Hostuttler, M.A., Rexroad III, C.E., Yao, J. 2011. MicroRNA transcriptome profile of rainbow trout (Oncorhynchus mykiss) egg [abstract]. Plant and Animal Genome Conference. p. 627.
Molecular characterization of the MuRF genes in rainbow trout: potential role in muscle degradation -
Wang, J., Salem, M., Kenney, P., Rexroad III, C.E., Yao, J. 2011. Molecular characterization of the MuRF genes in rainbow trout: potential role in muscle degradation. Comparative Biochemistry and Physiology. 158(3):208-215.
Status of the rainbow trout genome reference sequence assembly -
Palti, Y., Rexroad III, C.E. 2010. Status of the rainbow trout genome reference sequence assembly. Government Publication/Report. 1:1-9.
Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology -
Miller, M.R., Palti, Y., Luo, M., Miller, J.A., Brunelli, J.P., Wheeler, P.A., Rexroad III, C.E., Thorgaard, G.H., Doe, C.Q. 2011. Rapid and accurate sequencing of the rainbow trout physical map using Illumina technology. Plant and Animal Genome Conference. W045.
Genomic analysis of the rainbow trout response to crowding -
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano, C., Yao, J., Palti, Y., Weber, G.M. 2011. Genomic analysis of the rainbow trout response to crowding. Plant and Animal Genome Conference. P630.
Unlocking genetic secrets of the fast/slow growth in rainbow trout with next-generation sequencing -
Salem, M., Leeds, T.D., Rexroad III, C.E., Yao, J. 2011. Unlocking genetic secrets of the fast/slow growth in rainbow trout with next-generation sequencing. Plant and Animal Genome Conference. W041.
Molecular characterization of the Akt-TOR signaling pathway in rainbow trout: potential role in muscle growth/degradation -
Qi, N., Salem, M., Kenney, B., Leeds, T.D., Rexroad IIII, C.E., Yao, J. 2011. Molecular characterization of the Akt-TOR signaling pathway in rainbow trout: potential role in muscle growth/degradation. Plant and Animal Genome Conference. W042.
Detection of QTL for spleen size and disease resistance in rainbow trout -
Palti, Y., Vallejo, R.L., Welch, T.J., Leeds, T.D., Evenhuis, J., Liu, S., Rexroad III, C.E., Wiens, G.D. 2011. Detection of QTL for spleen size and disease resistance in rainbow trout. Plant and Animal Genome Conference. p. 643.
Preliminary field evaluation of rainbow trout selectively bred for increased resistance to bacterial cold water disease -
Wiens, G.D., Leeds, T.D., Lapatra, S., Wilson, C., Cavendar, W., Evenhuis, J., Welch, T.J., Silverstein, J., Rexroad III, C.E. 2011. Preliminary field evaluation of rainbow trout selectively bred for increased resistance to bacterial cold water disease. Aquaculture America Conference. 308.
Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches Reprint Icon -
Salem, M., Rexroad III, C.E., Wang, J., Thorgaard, G.H., Yao, J. 2010. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Biomed Central (BMC) Genomics. 11:564.
SNP analysis with duplicated fish genomes: differentiation of SNPs, paralogous sequence variants and multi-site variants -
Castano, C., Palti, Y., Rexroad III, C.E. 2011. SNP analysis with duplicated fish genomes: differentiation of SNPs, paralogous sequence variants and multi-site variants. In: Liu, Z.J., editor. Next Generation Sequencing and Whole Genome Selection in Aquaculture. 1st edition. Malden, MA: Wiley-Blackwell. p. 133-150.
Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis Reprint Icon -
Vallejo, R.L., Wiens, G.D., Rexroad III, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis. Journal of Animal Science. 88:3814-3832.
Towards molecular biomarkers for muscle atrophy and fillet quality in rainbow trout -
Salem, M., Kenney, P., Rexroad III, C.E., Yao, J. 2011. Towards molecular biomarkers for muscle atrophy and fillet quality in rainbow trout. Aquaculture America Conference. 34.
Genomic analysis of the stress response of rainbow trout to crowding -
Rexroad III, C.E., Vallejo, R.L., Liu, S., Castano, C., Palti, Y., Weber, G.M. 2010. Genomic analysis of the stress response of rainbow trout to crowding [abstract]. Animal Genetics International Conference Proceedings. Paper No. 4023.
Validating selective breeding approaches for disease resistance -
Leeds, T.D., Rexroad Iii, C.E., Wiens, G.D. 2010. Validating selective breeding approaches for disease resistance. Trout Talk. 2010:6.
Genetic management of broodstock populations with DNA markers in rainbow trout -
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y. 2010. Genetic management of broodstock populations with DNA markers in rainbow trout. World Congress of Genetics Applied in Livestock Production, Liepzig, Germany. CDROM.
Genetic management of broodstock populations with DNA markers in rainbow trout -
Vallejo, R.L., Rexroad III, C.E., Liu, S., Palti, Y. 2010. Genetic management of broodstock populations with DNA markers in rainbow trout. World Congress of Genetics Applied in Livestock Production, August 1 - 6, 2010, Liepzig, Germany. p 0928PP3-53.
ADP-ribosylation factor-like protein 4C (ARL4C) interacts with galectin-3 during oocyte development and embryogenesis in rainbow trout (Oncorhynchus mykiss) -
Zhang, X., Rexroad Iii, C.E., Yao, J. 2010. ADP-ribosylation factor-like protein 4C (ARL4C) interacts with galectin-3 during oocyte development and embryogenesis in rainbow trout (Oncorhynchus mykiss) [abstract]. Society for the Study of Reproduction Annual Meeting. Paper No. 25.
Fbos, a novel oocyte-specific protein, interacts with proteins important for oocyte development in rainbow trout (Oncorhynchus mykiss) -
Wang, L., Tripurani, S.K., Wanna, W., Rexroad III, C.E., Yao, J. 2010. Fbos, a novel oocyte-specific protein, interacts with proteins important for oocyte development in rainbow trout (Oncorhynchus mykiss) [abstract]. Society for the Study of Reproduction Annual Meeting. Paper No. 410.
Single nucleotide polymorphism discovery in rainbow trout -
Rexroad Iii, C.E., Castano, C., Smith, T.P., Vallejo, R.L., Jianbo, Y., Wiedmann, R.T. 2010. Single nucleotide plymorphism discovery in rainbow trout. Aquaculture America Conference.
Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss) Reprint Icon -
Palti, Y., Rodriguez, M., Gahr, S.A., Purcell, M., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization and genetic mapping of the TLR1 gene in rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology. 28:918-926.
Response to selection for bacterial cold water disease resistance in rainbow trout -
Leeds, T.D., Silverstein, J., Weber, G.M., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Welch, T.J., Wiens, G.D. 0210. Response to selection for bacterial cold water disease resistance in rainbow trout. Journal of Animal Science. 88:1936-1946.
Molecular characterization and expression analysis of importin "a" family genes in rainbow trout -
Ma, H., Rexroad III, C.E., Yao, J. 2010. Molecular characterization and expression analysis of importin "a" family genes in rainbow trout. Plant and Animal Genome Conference.
Characterization of the rainbow trout transcriptome using Sanger and 454-Pyrosequencing approaches -
Salem, M., Rexroad III, C.E., Wang, J., Thorgaard, G.H., Yao, J. 2010. Characterization of the rainbow trout transcriptome using Sanger and 454-Pyrosequencing approaches. Plant and Animal Genome Conference, No. 101.
Molecular characterization of the MuRF gene family: potential role in rainbow trout muscle degradation -
Wang, J., Salem, M., Kenney, B.P., Weber, G.M., Rexroad III, C.E., Yao, J. 2010. Molecular characterization of the MuRF gene family: potential role in rainbow trout muscle degradation. Plant and Animal Genome Conference, No. 103.
Inheritance of rainbow trout Oncorhynchus mykiss spleen size and correlation with bacterial cold water disease resistance -
Wiens, G.D., Vallejo, R.L., Leeds, T.D., Palti, Y., Evenhuis, J., Welch, T.J., Rexroad Iii, C.E. 2010. Inheritance of rainbow trout Oncorhynchus mykiss spleen size and correlation with bacterial cold water disease resistance. World Aquaculture Society Meeting 2010. Paper No. 87.
Estimates of linkage disequilibrium and effective population size in rainbow trout -
Rexroad Iii, C.E., Vallejo, R.L. 2009. Estimates of linkage disequilibrium and effective population size in rainbow trout. BioMed Central (BMC) Genetics. 10:83.
Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis -
Vallejo, R.L., Wiens, G.D., Rexroad Iii, C.E., Welch, T.J., Evenhuis, J., Leeds, T.D., Janss, L.L., Palti, Y. 2010. Evidence of major genes affecting bacterial cold water disease resistance in rainbow trout using Bayesian methods of complex segregation analysis. Plant and Animal Genome Conference XVIII. Paper No. 103.
A first generation integrated physical and genetic map of the rainbow trout genome -
Palti, Y., Luo, M., Genet, C., Hu, Y., You, F., Vallejo, R.L., Rexroad Iii, C.E. 2010. A first generation integrated physical and genetic map of the rainbow trout genome. Plant and Animal Genome Conference XVIII. Paper No. 102.
Proteomic signature of muscle atrophy in rainbow trout Reprint Icon -
Salem, M., Kenney, B.P., Rexroad Iii, C.E., Yao, J. 2010. Proteomic signature of muscle atrophy in rainbow trout. Journal of Proteomics. 73(4):778-789.
Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics -
Wiens, G.D., Leeds, T.D., Vallejo, R.L., Palti, Y., Welch, T.J., Rexroad III, C.E. 2009. Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics. Flavobacterium Meeting.
Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library -
Sanchez Castano, C., Smith, T.P., Wiedmann, R.T., Vallejo, R.L., Salem, M., Yao, J., Rexroad Iii, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. Biomed Central (BMC) Genomics. 10:559.
Identification, characterization, and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss) Reprint Icon -
Palti, Y., Gahr, S.A., Purcell, M.K., Hadidi, S., Rexroad III, C.E., Wiens, G.D. 2010. Identification, characterization, and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss). Developmental and Comparative Immunology. 34:219-233.
A first generation BAC-based physical map of the Rainbow trout genome -
Palti, Y., Luo, M., Hu, Y., Genet, C., You, F., Vallejo, R.L., Thorgaard, G., Wheeler, P., Rexroad Iii, C.E. 2009. A first generation BAC-based physical map of the Rainbow trout genome. Biomed Central (BMC) Genomics. 10:462.
A MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss) -
Salem, M., Xiao, C., Womack, J., Rexroad Iii, C.E., Yao, J. 2010. A MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Marine Biotechnology. 12:410-429.
Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout -
Palti, Y., Vallejo, R.L., Johnson, N.A., Rexroad Iii, C.E. 2010. Genetic assessment tools for evaluating broodstock population structure and pedigree reconstruction in rainbow trout. World Aquaculture Society Meeting. San Diego, CA.
INTEGRATIVE MICRO-RNA AND PROTEOMIC APPROACHES IDENTIFY MOLECULAR MARKERS PREDICTIVE OF MUSCLE ATROPHY IN RAINBOW TROUT -
Salem, M., Kenney, B., Rexroad Iii, C.E., Yao, J. 2009. INTEGRATIVE MICRO-RNA AND PROTEOMIC APPROACHES IDENTIFY MOLECULAR MARKERS PREDICTIVE OF MUSCLE ATROPHY IN RAINBOW TROUT [abstract]. American Fisheries Society Annual Meeting. Papaer No. 10
Cloning of oocyte-expressed MicroRNAs in rainbow trout (Oncorhynchus mykiss) -
Zhang, X., Xiao, C., Salem, M., Rexroad Iii, C.E., Yao, J. 2009. Cloning of oocyte-expressed MicroRNAs in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss) -
Wang, L., Tripurani, S., Wanna, W., Weber, G.M., Rexroad Iii, C.E., Yao, J. 2009. Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
Evidence of major genes affecting stress response in rainbow trout using Bayesian methods of complex segregation analysis -
Vallejo, R.L., Rexroad III, C.E., Silverstein, J., Janss, L.G., Weber, G.M. 2009. Evidence of major genes affecting stress response in rainbow trout using Bayesian methods of complex segregation analysis. Journal of Animal Science. 87:3490-3505.
Response to selection for bacterial cold water disease resistance in rainbow trout -
Leeds, T.D., Silverstein, J., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Weber, G.M., Welch, T.J., Wiens, G.D. 2009. Response to selection for bacterial cold water disease resistance in rainbow trout. International Symposium on Genetics in Aquaculture.
Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics -
Wiens, G.D., Leeds, T.D., Vallejo, R.L., Palti, Y., Welch, T.J., Rexroad Iii, C.E. 2009. Resistance of rainbow trout to Flavobacterium psychrophilum infection: integrating selective breeding and microbial genomics. Flavobacterium 2009 Meeting. Paper No. 100.
Response to selection for bacterial cold water disease resistance in rainbow trout -
Leeds, T.D., Silverstein, J., Vallejo, R.L., Palti, Y., Rexroad III, C.E., Evenhuis, J., Hadidi, S., Weber, G.M., Welch, T.J., Wiens, G.D. 2009. Response to selection for bacterial cold water disease resistance in rainbow trout. American Fishery Society (Fish Health Section) Proceedings.
Variable regions in Flavobacterium psychrophilum strains identified by comparative genomics: application to selective breeding for cold water disease resistance -
Wiens, G.D., Lapatra, S.E., Palti, Y., Vallejo, R.L., Leeds, T.D., Welch, T.J., Rexroad III, C.E. 2009. Variable regions in Flavobacterium psychrophilum strains identified by comparative genomics: application to selective breeding for cold water disease resistance. American Fishery Society (Fish Health Section) Proceedings.
Identification of a functional splice variant of 14-3-3E1 in rainbow trout Reprint Icon -
Wanna, W., Rexroad III, C.E., Yao, J. 2010. Identification of a functional splice variant of 14-3-3E1 in rainbow trout. Marine Biotechnology. 12:70-80.
SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene -
Kongchum, P., Rexroad Iii, C.E., Hallerman, E., David, L., Palti, Y. 2009. SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene. Animal Genetics. 40:1001.
Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis -
Vallejo, R.L., Wiens, G.D., Welch, T.J., Rexroad Iii, C.E., Palti, Y. 2009. Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis. Gordon Research Conference Proceedings.
Microsatellite markers for species of genus Dionda (Cyprinidae) from the American southwest Reprint Icon -
Renshaw, M., Carson, E., Hanna, A., Rexroad Iii, C.E., Krannemhoft, T., Gold, J. 2009. Microsatellite markers for species of genus Dionda (Cyprinidae) from the American southwest. Conservation Genetics. 10:1569-1575.
A second generation genetic map for rainbow trout (Oncorhynchus mykiss) Reprint Icon -
Rexroad Iii, C.E., Palti, Y., Gahr, S.A., Vallejo, R.L. 2008. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BioMed Central (BMC) Genetics. 9:74.
Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth Reprint Icon -
Silverstein, J., Vallejo, R.L., Palti, Y., Welch, T.J., Wiens, G.D., Rexroad Iii, C.E., Ducrocq, V., Leeds, T.D. 2008. Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth. Journal of Animal Science. 87:860-867.
Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development -
Rexroad Iii, C.E., Palti, Y., Vallejo, R.L. 2009. Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development. Meeting Abstract.
A MicroRNA Repertoire for Functional Genome Research in rainbow trout (Oncorhynchus mykiss) -
Salem, M., Xiao, C., Jonah, T., Rexroad III, C.E., Yao, J. 2009. MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Meeting Abstract.
Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries -
Castano, C., Smith, T.P., Wiedmann, R.T., Yao, J., Rexroad III, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries. Meeting Abstract.
A First Generation BAC Physical Map of the Rainbow Trout Genome -
Palti, Y., Luo, M., Hu, Y., Genet, C., Vallejo, R.L., Rexroad III, C.E. 0209. A first generation bac physical map of the rainbow trout genome. Plant and Animal Genome Conference. Paper No. 100.
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays -
Koop, B., Von Schalburg, K., Leong, J., Walker, N., Lieph, R., Cooper, G., Robb, A., Beetz-Sargent, M., Holt, R.A., Moore, R., Brahmbhatt, S., Rosner, J., Mcgowan, C., Rexroad Iii, C.E., Davidson, W. 2008. A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. Biomed Central (BMC) Genomics. 9:545.
Microsatellite primers for red drum (Sciaenops ocellatus) -
Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Microsatellite primers for red drum (Sciaenops ocellatus). Fishery Bulletin. 106:476-82.
Transcriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells -
Schiotz, B.L., Jorgensen, S.M., Rexroad III, C.E., Gjoen, T., Krasnov, A. 2008. Transcriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells. Virus Research. 136:65-74.
Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis -
Renshaw, M., Douglas, K., Rexroad Iii, C.E., Churney, A., Gold, J. 2009. Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis. Molecular Ecology Resources. 9:830-832.
Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development -
Ramachandra, R., Salem, M., Gahr, S.A., Rexroad III, C.E., Yao, J. 2008. Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development. Biomed Central (BMC) Genomics. 8:41.
Development of a 37K high-density oligo-nucleotide microarray for rainbow trout -
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a 37K high-density oligo-nucleotide microarray for rainbow trout. Journal of Fish Biology. 72:(9)2187-2206.
Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population -
Rexroad III, C.E., Vallejo, R.L. 2008. Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population. Plant and Animal Genome Conference.
Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss) -
Wanna, W., Rexroad III, C.E., Jianbo, Y. 2008. Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome Conference.
Single Nucleotide Polymorphism Discovery in Rainbow Trout -
Castano, C., Yao, J., Rexroad III, C.E. 2008. Single Nucleotide Polymorphism Discovery in Rainbow Trout. Meeting Abstract.
PCR primer pairs for 100 microsatellites in red drum (Sciaenops ocellatus) -
Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Pcr primer pairs for 100 microsatellites in red drum (sciaenops ocellatus). Molecular Ecology Notes. 8:393-398.
Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes -
Gahr, S.A., Vallejo, R.L., Weber, G.M., Shepherd, B.S., Silverstein, J., Rexroad III, C.E. 2008. Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes. Physiological Genomics. 32:380-9.
PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT -
Palti, Y., Vallejo, R.L., Wiens, G.D., Rexroad III, C.E. 2008. Progress toward an immunogenetic map for rainbow trout. Plant and Animal Genome Conference.
Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss) -
Salem, M., Silverstein, J., Rexroad III, C.E., Jianbo, Y. Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss). Biomed Central (BMC) Genomics. 8:328.
Development of a High-density oligo-nucleotide microarray for rainbow trout -
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a High-density oligo-nucleotide microarray for rainbow trout. Meeting Abstract.
Isolation and characterizaton of dinucleotide microsatellites in greater amberjack, Seriola dumerili -
Renshaw, M.A., Patton, J., Rexroad III, C.E., Gold, J. 2007. Pcr primers for dinucleotide microsatellites in greater amberjack, seriola dumerili. Conservation Genetics 2007, 8(4):1009-1011.
IDENTIFICATION OF A NOVEL GERM CELL-SPECIFIC mRNA-LIKE TRANSCRIPT (RtGST-1) PREDOMINANTLY EXPRESSED IN EARLY PREVITELLGENIC OOCYTE IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Qiu, G., Rexroad III, C.E., Yao, J. 2007. Identification of a novel germ cell-specific mrna-like transcript (rtgst-1) predominantly expressed in early previtellgenic oocyte in rainbow trout (oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.
INVOLVEMENT OF MICRORNAS IN EMBRYONIC GENOME ACTIVATION AS SHOWN BY DICER EXPRESSION IN RAINBOW TROUT -
Ramachandra, R., Gahr, S.A., Rexroad III, C.E., Yao, J. 2007. Involvement of micrornas in embryonic genome activation as shown by dicer expression in rainbow trout. Society for the Study of Reproduction Annual Meeting.
Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss) -
Qiu, G., Weber, G.M., Rexroad III, C.E., Yao, J. 2008. Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss). Molecular Reproduction and Development. 75:723-30.
Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera -
Hoghadam, H., Ferguson, M.M., Rexroad III, C.E., Coulibaly, I., Danzmann, R.G. 2007. Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera. Animal Genetics. 38(5):527-532.
PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT -
Palti, Y., Rexroad III, C.E., Vallejo, R.L., Wiens, G.D. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.
Evolutionary sequenomics: The utility of comparative chromosomal synteny searches in revealing homologous DNA blocks derived from fish-specific 3R- and 4R-genome duplications -
Genome Sequence of Flavobacterium psychrophilum Strain CSF 259-93 and Characterization of a Large Cluster of Genes Containing Short Repeats -
Wiens, G.D., Welch, T.J., Rexroad III, C.E., Lapatra, S., Call, D.R., Hunnicutt, D., Bhattacharyya, A., Campbell, J., Walunas, T. 2007. Genome Sequence of Flavobacterium psychrophilum Strain CSF 259-93 and Characterization of a Large Cluster of Genes Containing Short Repeats. Meeting Abstract Pg 12.
CHARACTERIZATION OF EXPRESSED SEQUENCE TAGS FROM THE PITUITARY OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Rise, M., Hunt, P., Koop, B., Rexroad III, C.E. 2007. Characterization of expressed sequence tags from the pituitary of rainbow trout (oncorhynchus mykiss). Animal Biotechnology. 18(3):213-230.
Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout -
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout. Meeting Abstract.
PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT -
Fincham, M.R., Wiens, G.D., Rexroad III, C.E., Vallejo, R.L., Palti, Y. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.
Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss) -
Qiu, G., Ramachandra, R.K., Rexroad III, C.E., Yao, J. Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss). Animal Reproduction Sciences 105:209-225.
DEVELOPMENT AND CRITICAL EVALUATION OF A NEW MULTIPLEX SYSTEM FOR PARENTAL ALLOCATION AND BROODSTOCK MANAGEMENT IN RAINBOW TROUT -
Johnson, N., Rexroad III, C.E., Eric, H., Vallejo, R.L., Palti, Y. 2007. Development and critical evaluation of a new multiplex system for parental allocation and broodstock management in rainbow trout. Aquaculture 266:53-62.
THE COMPLETE NUCLEAR ESTROGEN RECEPTOR FAMILY IN THE RAINBOW TROUT: DISCOVERY OF THE NOVEL ER.2 AND BOTH ER. ISOFORMS -
Nagler, J., Cavileer, T., Sullivan, J., Cyr, D., Rexroad III, C.E. 2007. The complete nuclear estrogen receptor family in the rainbow trout: discovery of the novel er.2 and both er. isoforms. Gene Vol 392(1-2)164-173.
Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout -
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. Plant and Animal Genome Abstracts Pg. 11.
Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout -
Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. World Aquaculture Society Meeting.
Radiation Hybrid Mapping in Aquatic Species -
Rexroad III, C.E. 2007. Radiation Hybrid Mapping in Aquatic Species. Aquaculture Genome Technologies Chapter 18.
Identification of Ests From The Rainbow Trout Pituitary -
Rexroad III, C.E., Gahr, S.A. 2007. Identification of Ests From The Rainbow Trout Pituitary. Plant and Animal Genome Conference.
INTEGRATION OF MOLECULAR GENETIC INFORMATION INTO THE NCCCWA SELECTIVE BREEDING PROGRAM FOR RAINBOW TROUT -
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Integration of molecular genetic information into the ncccwa selective breeding program for rainbow trout. Israeli Journal of Aquaculture 58(4) 323-7.
The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression -
Nichols, K., Broman, K., Gahr, S.A., Rexroad III, C.E., Sundin, K., Young, J., Phillips, R., Wheeler, P., Thorgaard, G. 2006. The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression. [abstract]. 4th Ecological Genomics Symposium.
ASSIGNMENT OF RAINBOW TROUT LINKAGE GROUPS TO SPECIFIC CHROMOSOMES -
Phillips, R., Nichols, K., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Gahr, S.A., Danzmann, R., Drew, R., Thorgaard, G. 2006. Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 174(3):1661-1670.
MAPPING OF GENES IN A REGION ASSOCIATED WITH UPPER TEMPERATURE TOLERANCE IN RAINBOW TROUT -
Coulibaly, I., Danzmann, R., Palti, Y., Vallejo, R.L., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Mapping of genes in a region associated with upper temperature tolerance in rainbow trout. Animal Genetics 37(6):598-599.
MAPPING OF TOLL LIKE RECEPTOR (TLR) GENES IN RAINBOW TROUT -
Palti, Y., Rodriguez, F., Vallejo, R.L., Rexroad III, C.E. 2006. Mapping of toll like receptor (TLR) genes in rainbow trout. Animal Genetics 37(6):597-598.
EMBRYONIC EXPRESSION OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT -
Coulibaly, I., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Embryonic expression of uncoupling protein 2 genes in rainbow trout. Fish Physiology and Biochemistry Journal. 32:249-253.
MICROARRAY GENE EXPRESSION ANALYSIS IN ATROPHYING RAINBOW TROUT MUSCLE: AN UNIQUE NON-MAMMALIAN MUSCLE DEGRADATION MODEL -
Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2006. Microarray gene expression analysis in atrophying rainbow trout muscle: an unique non-mammalian muscle degradation model. Physiological Genomics 28:33-45.
GENOMIC STRUCTURE AND EXPRESSION OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2006. Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (oncorhynchus mykiss). Biomed Central (BMC) Genomics 7:203.
Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout -
Ramachandra, R.K., Lankford, S.E., Weber, G.M., Rexroad III, C.E., Yao, J. 2006. Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout. Molecular Reproduction and Development 74(4) 502-11.
GENOMIC RESOURCES FOR STUDYING EARLY LIFE STAGE SALMONID HEALTH -
Rise, M., Honeyfield, D.C., Devlin, R.H., Rexroad III, C.E., Davidson, W.S., Koop, B.F. 2006. Genomic resources for studying early life stage salmonid health. Meeting Abstract. 7:192
GENETICS AND GENOMICS - INTEGRATION OF MOLECULAR GENETICS INTO A BREEDING PROGRAM FOR RAINBOW TROUT -
Silverstein, J., Weber, G.M., Rexroad III, C.E., Vallejo, R.L. 2006. Genetics and genomics - integration of molecular genetics into a breeding program for rainbow trout. Israeli Journal of Aquaculture 2006. 58:231.
SELECTIVE BREEDING AND GENETIC MAPPING OF DISEASE RESISTANCE IN RAINBOW TROUT -
Palti, Y., Rexroad Iii, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Selective breeding and genetic mapping of disease resistance in rainbow trout. Meeting Abstract. Presented at The 9th International Symposium of The International Association for Genetics in Aquaculture, June 26-30, 2006 at Montpellier, France. Meeting Book of Abstracts p. 81.
PCR PRIMERS FOR TRINUCLEOTIDE AND TETRANUCLEOTIDE MICROSATELLITES IN GREATER AMBERJACK, SERIOLA DUMERILI -
Renshaw, M.A., Patton, J.C., Rexroad III, C.E., Gold, J.R. 2006. Pcr primers for trinucleotide and tetranucleotide microsatellites in greater amberjack, seriola dumerili. Molecular Ecology Notes 6: 1162-1164.
FASTING AND REFEEDING EFFECTS THE EXPRESSION OF THE INHIBITOR OF DNA BINDING (ID)GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) MUSCLE -
Gahr, S.A., Weber, G.M., Rexroad III, C.E. 2006. Fasting and refeeding effects the expression of the inhibitor of dna binding (id)genes in rainbow trout (Oncorhynchus mykiss) muscle. Comparative Biochemistry and Physiology. 144:472-477.
GENE EXPRESSION AND CELLULAR IMMUNE RESPONSE OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) EXPOSED TO YERSINIA RUCKERI: A MODEL SYSTEM FOR UNDERSTANDING MECHANISMS OF TELEOST PROTECTIVE IMMUNITY -
Wiens, G.D., Lapatra, S., Palti, Y., Rexroad III, C.E., Yao, J., Welch, T.J. 2006. Gene expression and cellular immune response of rainbow trout (Oncorhynchus mykiss) exposed to Yersinia ruckeri: A model system for understanding mechanisms of teleost protective immunity. 10th International Congress, International Society of Developmental and Comparative Immunology, July 1 - 6, 2006. Meeting Abstract. Page 249.
SALMONID GENOMIC SEQUENCING INITIATIVE: THE CASE FOR SEQUENCING THE GENOMICS OF ATLANTIC SALMON (SALMO SALAR) AND RAINBOW TROUT (ONCORYNCHUS MYKISS) -
Davidson, W., Chevalet, C., Rexroad III, C.E., Omholt, S. 2006. Salmonid genomic sequencing initiative: the case for sequencing the genomics of atlantic salmon (salmo salar) and rainbow trout (oncorynchus mykiss). Government Publication/Report. p. 1-22.
ANABOLIC EFFECTS OF FEEDING BETA-2 ADRENERGIC AGONISTS ON RAINBOW TROUT MUSCLE PROTEASES AND MYOFIBRILLAR PROTEINS -
Salem, M., Levesque, A., Moon, T., Rexroad III, C.E., Yao, J. 2006. Anabolic effects of feeding beta-2 adrenergic agonists on rainbow trout muscle proteases and myofibrillar proteins. Comparative Biochemistry and Physiology. 1 44(2) 145-154.
MOLECULAR CHARACTERIZATION OF FISH MUSCLE ATROPHY AND PROTEOLYSIS ASSOCIATED WITH SPAWNING -
Mohamed, S., Keeney, B., Rexroad III, C.E., Yao, J. 2006. Molecular characterization of fish muscle atrophy and proteolysis associated with spawning. Comparative Biochemistry and Physiology 1(2):227-237.
GENETICS AND GENOMICS-INTREGRATION OF BREEDING AND MOLECULAR GENETICS PROGRAMS -
Silverstein, J., Weber, G.M., Rexroad Iii, C.E., Vallejo, R.L. 2006. Genetics and genomics-intregration of breeding and molecular genetics programs. Meeting Abstract. Presented at BARD sponsored workshop on Aquaculture Genetics in Eilat, Israel, Feb 20-23, 2006.
COMPARATIVE MAPS OF SALMONID GENOMES: AN UPDATE -
Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Guyomard, R., Ferguson, M., Danzmann, R. 2006. Comparative maps of salmonid genomes: an update. Meeting Abstract. Montpellier, France 6/25 - 30, 2006.
PROGRESS TOWARD A GENE MAP FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Ferguson, M., Danzmann, R. 2006. Progress toward a gene map for rainbow trout (oncorhynchus mykiss). Meeting Abstract International Symposium for Genetics in Aquaculture 6/25-30, 2006 Montpellier, France.
GENOMICS AND GENETICS:MOLECULAR VARIATION, BIOINFORMATICS AND FUNCTIONAL GENOMICS, IMPLEMENTATION INTO THE NCCCWA BREEDING PROGRAM -
Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Genomics and genetics:molecular variation, bioinformatics and functional genomics, implementation into the ncccwa breeding program. BARD Workshop: Aquaculture Genetics-Status and Prospects, Eilat, Israel. Meeting Abstract.
IDENTIFICATION AND CHARACTERIZATION OF MICROSATELLITES FOR STRIPED BASS FROM REPEAT-ENRICHED LIBRARIES -
Rexroad III, C.E., Vallejo, R.L., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2006. Identification and characterization of microsatellites for striped bass from repeat-enriched libraries. Conservation Genetics 7(6) 971-982.
EFFECTS OF RECOMBINANT BOVINE SOMATOTROPIN (RBST) ON THE LIVER AND MUSCLE TRANSCRIPTOMES OF HIGH GROWTH RATE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Weber, G.M., Shepherd, B.S., Silverstein, J., Vallejo, R.L., Coulibaly, I., Rexroad III, C.E. 2005. Effects of Recombinant Bovine Somatotropin (rbst) on the Liver and Muscle Transcriptomes of High Growth Rate Rainbow Trout (Oncorhynchus Mykiss). Plant and Animal Genome Conference, Jan 2006. Abstract ID P534, pg 260.
GENOMIC STRUCTURE AND EXPRESSION PATTERNS OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT -
Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2005. Genomic structure and expression patterns of uncoupling protein 2 genes in rainbow trout. Plant and Animal Genome Conference. Abstract ID W188, page 50.
MAPPING, EXPRESSION, AND MOLECULAR VARIATION OF POTENTIAL CANDIDATE GENES UNDERLYING A MAJOR EMBRYONIC DEVELOPMENT RATE QTL IN RAINBOW TROUT -
Nichols, K., Gahr, S.A., Rexroad III, C.E., Phillips, R., Thorgaard, G. 2005. Mapping, expression, and molecualr variation of potential candidate genes underlying a major embryonic development rate qtl in rainbow trout. Plant and Animal Genome Conference. Abstract ID W205, page 54.
CHARACTERIZATION OF MAJOR HISTOCOMPATIBILITY (MH) HAPLOTYPES AND THEIR ASSOCIATION WITH DISEASE RESISTANCE IN RAINBOW TROUT -
Palti, Y., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J. 2005. Characterization of major histocompatibility (MH) haplotypes and their association with desease resistance in rainbow trout. Plant and Animal Genome Conference. Abstract ID P643, page 262.
MICROSATELLITE MARKERS FOR POPULATION GENETICS AND GENOME MAPPING IN STRIPED BASS -
Rexroad III, C.E., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2005. Microsatellite markers for population genetics and genome mapping in striped bass. Plant and Animal Genome Conference. Abstract ID P638, page 261.
THE NATIONAL CENTER FOR COOL AND COLD WATER AQUACULTURE GENETIC MAP FOR RAINBOW TROUT -
Rexroad III, C.E., Danzmann, R., Palti, Y., Vallejo, R.L. 2005. The national center for cool and cold water aquaculture genetic map for rainbow trout. Plant and Animal Genome Conference. Abstract ID P639, page 261.
A PCR SCREENING METHOD FOR RAPID DETECTION OF MICROSATELLITES IN BACTERIAL ARTIFICIAL CHROMOSOMES (BACS) -
Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2006. A pcr screening method for rapid detection of microsatellites in bacterial artificial chromosomes (bacs). Marine Biotechnology DOI: 10.1007/s10126-005-5064-7. Online Publication 5/25/2006.
ISOLATION AND CHARACTERIZATION OF 149 NOVEL MICROSATELLITE DNA MARKERS FOR STRIPED BASS, MORONE SAXATILIS, AND CROSS-SPECIES AMPLIFICATION IN WHITE BASS, M. CHRYSOPS, AND THEIR HYBRID -
Couch, C., Garber, A., Rexroad III, C.E., Abrams, J., Stannard, J., Westerman, M., Sullivan, C. 2006. Isolation and characterization of 149 novel microsatellite dna markers for striped bass, morone saxatilis, and cross-species amplification in white bass, m. chrysops, and their hybrid. Molecular Ecology Notes. 6(3):667-669.
Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss) -
Higgins, A., Silverstein, J., Engles, J., Wilson, M., Rexroad III, C.E., Blemmings, K. 2006. Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 31(1):33-44.
CRITICAL EVALUATION OF A NEW MULTIPLEX SYSTEM USED FOR PARENTAL ALLOCATION AND BROODSTOCK MANAGEMENT IN RAINBOW TROUT (Oncorhynchus mykiss) SELECTION PROGRAMS -
Johnson, N., Palti, Y., Rexroad III, C.E., Silverstein, J., Vallejo, R.L. 2006. Critical evaluation of a new multiplex system used for parental allocation and broodstock management in rainbow trout (oncorhynchus mykiss) selection programs. World Aquaculture Society Meeting.
ESTROGEN RECEPTOR ALPHA-2: A NOVEL ISOFORM FROM THE RAINBOW TROUT -
Nagler, J., Cavileer, T., Cyr, D., Rexroad III, C.E. 2005. Estrogen receptor alpha-2: a novel isoform from the rainbow trout. Society for the Study of Reproduction Annual Meeting. 38:M184.
GENOMIC SEQUENCE AND ANNOTATION OF A REGION THAT HARBORS MAJOR HISTOCOMPATIBILITY GENES IN RAINBOW TROUT -
Palti, Y., Rodriguez, M.F., Gahr, S.A., Rexroad Iii, C.E., Hansen, J.D. 2005. Genomic sequence and annotation of a region that harbors major histocompatibility genes in rainbow trout. Meeting Abstract. The 3rd International Symposium of Genetics of Animal Health, July 13-15, 2005 held in Ames, Iowa, USA, Meeting Book of Abstracts p. 124.
CHARACTERIZATION OF THE CALPASTATIN GENE IN FISH: ITS POTENTIAL ROLE IN MUSCLE GROWTH AND FILLET QUALITY -
Mohamed, S., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Characterization of the calpastatin gene in fish: its potential role in muscle growth and fillet quality. Comparative Biochemistry and Physiology 141: 488-97.
IDENTIFICATION OF A NOVEL GILL SPECIFIC CALPAIN FROM THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Salem, S., Rexroad Iii, C.E., Yao, J. 2006. Identification of a novel gill specific calpain from the rainbow trout (oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 32:1-6.
MICROSATELLITE DEVELOPMENT FOR A HYBRID STRIPED BASS (MORONE CHRYSOPS X M. SAXATILIS) SELECTIVE BREEDING PROGRAM -
Couch, C., Garber, A., Abrams, J., Rexroad III, C.E., Westerman, M., Sullivan, C. 2005. Microsatellite development for a hybrid striped bass (morone chrysops x m. saxatilis) selective breeding program. Meeting Abstract. International Marine Biotechnology Conference, June 7 - 12, 2005, St. Johns, New Foundland, Canada.
TRANSCRIPTOME RESPONSES TO CARBON TETRACHLORIDE AND PYRENE IN THE KIDNEY AND LIVER OF JUVENILE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Krasnov, A., Koskinen, H., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2005. Transcriptome responses to carbon tetrachloride and pyrene in the kidney and liver of juvenile rainbow trout (oncorhynchus mykiss). Aquatic Toxicology 74: 70-81.
A COMPARATIVE ANALYSIS OF THE RAINBOW TROUT GENOME WITH TWO OTHER SPECIES OF FISH (ARCTIC CHARR AND ATLANTIC SALMON) WITHIN THE TETRAPLOID DERIVATIVE SALOMIDAE FAMILY (SUBFAMILY: SALMONINAE) -
Danzmann, R., Cairney, M., Ferguson, M., Gharbi, K., Guyomard, R., Holm, L., Hoyheim, B., Leder, E.H., Okamoto, N., Ozaki, A., Rexroad III, C.E., Sakomoto, T., Taggart, J., Woram, R. 2005. A comparative analysis of the rainbow trout genome with two other species of fish (arctic charr and atlantic salmon) within the tetraploid derivative salomidae family (subfamily: salmoninae). Genome 2005 Dec;48(6):1037-51.
COMPARATIVE MAPPING OF EXPRESSED SEQUENCE TAGS CONTAINING MICROSATELLITES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Rexroad III, C.E., Rodriguez, M.F., Gharbi, K., Danzmann, R., Dekoning, J., Phillips, R., Palti, Y. 2005. Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (oncorhynchus mykiss). Genomics. BMC Genomics 6:54.
IDENTIFICATION AND EXPRESSION PROFILE OF THE ID GENE FAMILY IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Rodriguez, M.F., Rexroad III, C.E. 2005. Identification and expression profile of the id gene family in rainbow trout (oncorhynchus mykiss). Biochimica et Biophysica Acta 1729:64-73.
GENOMIC SEQUENCING OF A RAINBOW TROUT MAJOR HISTOCOMPATIBILITY REGION THAT HARBORS CLASS II AND CLASS III GENES -
Palti, Y., Fincham, M.R., Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Hansen, 2005. J. Genomic sequencing of a rainbow trout major histocompatibility region that harbors class ii and class iii genes. Plant and Animal Genome XIII Abstracts P606, pg 222.
ASSIGNMENT OF RAINBOW TROUT LINKAGE GROUPS TO SPECIFIC CHROMOSOMES -
Phillips, R., Noakes, M., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Palti, Y., Danzmann, R., Nichols, K., Drew, R., Thorgaard, G. 2005. Assignment of rainbow trout linkage groups to specific chromosomes. Plant and Animal Genome XIII Abstracts W034, page 13.
IDENTIFYING CANDIDATE GENES FOR RAINBOW TROUT ONCORHYNCHUS MYKISS AQUACULTURE RESEARCH -
Rexroad III, C.E., Gahr, S.A., Palti, Y. 2005. Identifying candidate genes for rainbow trout (Oncorhynchus mykiss) aquaculture research. Aquaculture America Conference page 362, January 17-20, New Orleans, LA.
DEVELOPMENT OF COMPARATIVE MAPS USING MICROSATELLITES DEVELOPED FROM RAINBOW TROUT EST -
Rexroad III, C.E., Rodriguez, M.F., Danzmann, R., Palti, Y. 2005. Development of comparative maps using microsatellites developed from rainbow tourt est. Plant and Animal Genome XIII P604, page 221.
GENOMIC CHARACTERIZATION OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) TOLL-LIKE RECEPTOR GENES -
Rodriguez, M.F., Wiens, G.D., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2005. Genomic characterization of rainbow trout (Oncorhynchus mykiss) toll-like receptor genes. Plant and Animal Genome XIII Abstract W030 page 12.
MOLECULAR CHARACTERIZATION OF CALPASTATINS FROM RAINBOW TROUT: THEIR ROLE IN MUSCLE GROWTH AND FILLET TEXTURE DEVELOPMENT -
Salem, M., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Molecular characterization of calpastatins from rainbow trout: their role in muscle growth and fillet texture development. Aquaculture America Conference 2005 page 388.
TRANSCRIPTOME ANALYSES OF RAINBOW TROUT OOCYTES -
Yao, J., Higgins, A., Rexroad III, C.E. 2005. Transcriptome analyses of rainbow trout oocytes. Plant and Animal Genome XIII p33, page 88.
GENE EXPRESSION OF THE INHIBITOR OF DNA BINDING (ID) PROTEINS DURING EMBRYONIC DEVELOPMENT IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Rexroad III, C.E. 2005. Gene expression of the inhibitor of DNA binding (ID) proteins during embryonic development in the rainbow trout (oncorhynchus mykiss). Aquaculture America Conference January 17-20, page 140 New Orleans, LA.
CHARACTERIZATION AND COMPARISON OF MICROSATELLITES DERIVED FROM REPEAT-ENRICHED LIBRARIES AND EXPRESSED SEQUENCE TAGS -
Coulibaly, I., Gharbi, K., Danzmann, R., Yao, J., Rexroad III, C.E. 2005. Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags. Animal Genetics 36, 309-315.
COMPARISONS OF MICROSATELLITES DERIVED FROM REPEAT-ENRICHED LIBRARIES AND EST IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Coulibaly, I., Yao, J., Rexroad III, C.E. 2005. Comparisons of microsatellites derived from repeat-enriched libraries and est in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome XIII P602 pg 221.
TISSUE DISTRIBUTION AND EMBRYONIC EXPRESSION OF THE INHIBITOR OF DIFFERENTIATION/DNA BINDING (ID) FAMILY OF PROTEINS IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Rexroad III, C.E. 2005. Tissue distribution and embryonic expression of the inhibitor of differentiation/DNA binding (ID) family of proteins in the rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome, XIII P603, pg 221.
GENE EXPRESSION IN THE BRAIN AND KIDNEY OF RAINBOW TROUT IN RESPONSE TO HANDLING STRESS -
Krasnov, A., Koskinen, H., Petri, P., Rexroad Iii, C.E., Afanasyev, S., Molsa, H. 2005. Gene expression in the brain and kidney of rainbow trout in response to handling stress. Biomed Central (BMC) Genomics 6:3.
HETEROSIS AND GENETIC DISTANCE IN STRAIN CROSSES OF RAINBOW TROUT -
Silverstein, J., Parsons, J., Rexroad III, C.E., Palti, Y. 2005. Heterosis and genetic distance in strain crosses of rainbow trout. Aquaculture America Conference 2005. New Orleans, LA 1/17 - 1/20/2005.
MICROSATELLITE DNA MARKERS FOR POPULATION-GENETIC STUDIES AND PARENTAGE ASSIGNMENT COBIA, RACHYENTRON CANADUM -
Pruett, C., Saillant, E., Renshaw, M., Patton, J., Rexroad Iii, C.E., Gold, J., Microsatellite dna markers for population-genetic studies and parentage assignment cobia, rachyentron canadum. Molecular Ecology Notes 5: 84-86.
IDENTIFICATION AND MOLECULAR CHARACTERIZATION OF THE RAINBOW TROUT CALPAINS (CAPN1 AND CAPN2)THEIR EXPRESSION IN MUSCLE WASTING DURING STARVATION -
Salem, M., Nath, J., Rexroad III, C.E., Killefer, J., Yao, J. 2005. Identification and molecular characterization of the rainbow trout calpains (capn1 and capn2)their expression in muscle wasting during starvation. Comparative Biochemistry and Physiology 140:63-71.
CHARACTERIZATION OF POLYMORPHIC MICROSATELLITES IN THE PACIFIC SARDINE SARDINOPS SAGAX SAGAX (CLUPEIDAE) -
Pereyra, R., Saillant, E., Pruett, C., Rexroad III, C.E., Rocha-Olivares, A., Gold, J. 2004. Characterization of polymorphic microsatellites in the pacific sardine sardinops sagax sagax (clupeidae). Molecular Ecology Notes 4(4):739-41.
GENOMIC CHARACTERIZATION OF A NOVEL PAIR OF ID GENES IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Rexroad III, C.E., Palti, Y. 2004. Genomic characterization of a novel pair of id genes in the rainbow trout (oncorhynchus mykiss). Animal Genetics. 35(4):317-320.
RESPONSE OF RAINBOW TROUT TRANSCRIPTOME TO MODEL CHEMICAL CONTAMINANTS -
Koskinen, H., Pehkonen, P., Vehniainen, E., Krasnov, A., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2004. Response of rainbow trout transcriptome to model chemical contaminants. Biochemical and Biophysical Research Communications. 320(3):745-753.
THE 14-3-3 PROTEINS IN THE TELEOST FISH RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Koskinen, H., Krasnov, A., Rexroad III, C.E., Gorodilov, Y., Afanasyev, S., Molsa, H. 2004. The 14-3-3 proteins in the teleost fish rainbow trout (oncorhynchus mykiss). Journal Experimental Biology 207(19):3361-8.
GENOMIC CHARACTERIZATION AND EXPRESSION OF THE ID PROTEIN GENES IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Rexroad III, C.E. 2004. Genomic characterization and expression of the id protein genes in the rainbow trout (oncorhynchus mykiss). Experimental Biology. April 17-21, 2004. Abstract 233.2.
GENOMIC CHARACTERIZATION AND EXPRESSION ANALYSIS OF A TUMOR NECROSIS FACTOR SUPERFAMILY 13B (TNFSF 13B) HOMOLOGUE FROM RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Wiens, G.D., Gahr, S.A., Morrison, C., Palti, Y., Rexroad III, C.E., Rodriguez, M.F., Welch, T.J. 2004. Genomic characterization and expression analysis of a tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). International Immunology Congress p. 82C (abstract W15.15).
CHARACTERIZATION OF A NEW BAC LIBRARY FOR RAINBOW TROUT -
Palti, Y., Gahr, S.A., Rexroad III, C.E. 2004. Characterization of a new bac library for rainbow trout. Animal Genetics.35(2):130-133.
APPLYING GENOMICS TO SALMONID AQUACULTURE -
Rexroad III, C.E. 2004. Applying genomics to salmonid aquaculture. Global Aquaculture Advocate. 7(2):46-47.
A GENETIC LINKAGE MAP FOR ARCTIC CHAR (SALVELINUS ALPINUS): EVIDENCE FOR HIGHER RECOMBINATION RATES AND SEGRETATION DISTORTION IN HYBRID VERSUS PURE STRAIN MAPPING PARENTS -
Woram, R.A., Mcgowan, C., Stout, J.A., Gharbi, K., Ferguson, M.M., Hoyheim, B., Davidson, W.S., Rexroad III, C.E., Danzmann, R.G. 2004. A genetic linkage map for arctic char (salvelinus alpinus): evidence for higher recombination rates and segretation distortion in hybrid versus pure strain mapping parents. Genome. 47:304-315.
APPLYING GENOMICS TO SALMONID AQUACULTURE -
Rexroad III, C.E. 2004. Applying genomics to salmonid aquaculture. World Aquaculture Society Meeting. p.497.
IDENTIFICATION AND USE OF POLYMORPHIC MARKERS IN RAINBOW TROUT -
Stewart, A., Dailey, R., Rexroad Iii, C.E. 2004. Identification and use of polymorphic markers in rainbow trout. World Aquaculture Society Meeting. March 1 - 5, 2004 Honolulu, Hawaii.
THE EFFECT OF GENETICS AND STARVATION ON LYSINE CATABOLISM IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) LIVER -
Federation of American Societies for Experimental Biology Conference J. 18(4):A539
IDENTIFICATION OF ANONYMOUS MICROSATELLITE MARKERS FOR MAPPING IN RAINBOW TROUT -
Coulibaly, I., Rexroad III, C.E. 2004. Identification of anonymous microsatellite markers for mapping in rainbow trout. Plant and Animal Genome Abstracts. Abstract P718. p.250.
IDENTIFICATION AND CHARACTERIZATION OF TWO INHIBITOR OF DIFFERENTIATION (ID) GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Gahr, S.A., Palti, Y., Rexroad III, C.E. 2004. Identification and characterization of two inhibitor of differentiation (id) genes in rainbow trout (oncorhynchus mykiss). Plant and Animal Genome Abstracts. p.252.
PHYSICAL MAPPING OF LOCI OF INTEREST IN RAINBOW TROUT: EVIDENCE FOR GENOME-WIDE DUPLICATION -
Palti, Y., Gahr, S.A., Hansen, J., Rexroad III, C.E. 2004. Physical mapping of loci of interest in rainbow trout: evidence for genome-wide duplication. Plant and Animal Genome Abstracts. p.251.
EXPRESSED SEQUENCE TAGS IN RAINBOW TROUT INTESTINE, LIVER, AND KIDNEY (ONCORHYNCHUS MYKISS) -
Stewart, A., Soonhag, K., Killefer, J., Rexroad III, C.E. 2004. Expressed sequence tags in rainbow trout intestine, liver, and kidney (oncorhynchus mykiss). Plant and Animal Genome Abstracts. Abstract P53. p.85.
A PROPOSAL ADVOCATING DRAFT SEQUENCING THE GENOME OF RAINBOW TROUT, ONCORHYNCHUS MYKISS -
Rexroad III, C.E., Palti, Y., Thorgaard, G., Hansen, J., Silverstein, J., Weber, G.M., Wiens, G.D., Gahr, S.A., Rodriguez, M.F., Coulibaly, I., Overturf, K. 2004. A proposal advocating draft sequencing the genome of rainbow trout, oncorhynchus mykiss. Government Publication/Report.. Dept of Energy Joint Genome Institute Community Sequencing Program.
SEQUENCE ANALYSIS OF A RAINBOW TROUT CDNA LIBRARY AND CREATION OF A GENE INDEX -
Rexroad III, C.E., Gahr, S.A., Palti, Y., Karamycheva, S., Keele, J.W., Quackenbush, J. 2003. Sequence analysis of a rainbow trout cdna library and creation of a gene index. Cytogenetics and Genome Research. 102(1-4):347-354.
CHARACTERIZATION OF TWENTY FOUR MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Rodriguez, M.F., Rexroad III, C.E., Palti, Y. 2003. Characterization of twenty four microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 3(4):619-622.
MOLECULAR CHARACTERIZATION OF A PUTATIVE TUMOR NECROSIS FACTOR SUPERFAMILY 13B (TNFSF 13B) HOMOLOGUE FROM RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Wiens, G.D., Palti, Y., Rexroad III, C.E., Welch, T.J. 2003. Molecular characterization of a putative tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). Immunology Research Workshop. p.35.
DEVELOPMENT OF GENETIC MARKERS FOR STRIPED BASS (MORONE SAXITILIS) AND RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Rexroad III, C.E. 2003. Development of genetic markers for striped bass (morone saxitilis) and rainbow trout (oncorhynchus mykiss). Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.8.
RAPID DEVELOPMENT OF GENE-TAGGED MICROSATELLITE MARKERS FROM BAC CLONES OF CHANNEL CATFISH, ICTALURUS PUNCTATUS, AND RAINBOW TROUT, ONCORHYNCHUS MYKISS -
Waldbieser, G.C., Karsi, A., Gahr, S.A., Rexroad III, C.E. 2003. Rapid development of gene-tagged microsatellite markers from bac clones of channel catfish, ictalurus punctatus, and rainbow trout, oncorhynchus mykiss. Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.22.
DEVELOPMENT OF MICROARRAYS FOR TRANSCRIPTOME RESEARCH IN RAINBOW TROUT -
Rexroad III, C.E., Keele, J.W. 2003. Development of microarrays for transcriptome research in rainbow trout. VI Inter Congress of Comparative Physiology & Biochemistry. Feb 2-7, 2003. Vol 134. Supl 1. Abstract 8.2. p.S29.
UTILIZATION AND CHARACTERIZATION OF THE NCCCWA RAINBOW TROUT BAC LIBRARY FOR PHYSICAL AND LINKAGE MAPPING -
Palti, Y., Rexroad Iii, C.E., Gahr, S.A. 2003. Utilization and characterization of the ncccwa rainbow trout bac library for physical and linkage mapping. Plant and Animal Genome XI. p.241.
SEQUENCE ANALYSIS AND UTILIZATION OF RAINBOW TROUT EXPRESSED SEQUENCE TAGS (EST'S) -
Gahr, S.A., Keele, J.W., Palti, Y., Rexroad III, C.E. 2003. Sequence analysis and utilization of rainbow trout expressed sequence tags (est's). Plant and Animal Genome Abstracts. Abstract P667. p.241.
DEVELOPMENT OF MOLECULAR TOOLS FOR GENOME RESEARCH IN RAINBOW TROUT -
Rexroad III, C.E. 2003. Development of molecular tools for genome research in rainbow trout. Plant and Animal Genome Abstracts. Abstract W18B. p.8.
IDENTIFICATION AND MAPPING OF MICROSATELLITES IN RAINBOW TROUT EST SEQUENCES -
Rexroad III, C.E., Keele, J.W., Hostuttler, M.A., Palti, Y. 2003. Identification and mapping of microsatellites in rainbow trout est sequences. Plant and Animal Genome XI Book of Abstracts. p.242.
GENETIC VARIATION MEASURED BY MICROSATELLITES AMONG THREE STRAINS OF DOMESTICATED RAINBOW TROUT -
Silverstein, J., Rexroad III, C.E., King, T. 2004. Genetic variation measured by microsatellites among three strains of domesticated rainbow trout. Aquaculture Research. 35:40-48.
CHARACTERIZATION OF GENETIC VARIATION IN THREE STRAINS OF RAINBOW TROUT USED TO INITIATE A SELECTIVE BREEDING PROGRAM FOR AQUACULTURE PRODUCTION EFFICIENCY -
Silverstein, J., Rexroad III, C.E. 2003. Characterization of genetic variation in three strains of rainbow trout used to initiate a selective breeding program for aquaculture production efficiency. Plant and Animal Genome 2003 Annual Meeting Book of Abstracts.
CHARACTERIZATION AND MAPPING OF NINETEEN POLYMORPHIC MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Palti, Y., Danzman, R.G., Rexroad Iii, C.E. 2003. Characterization and mapping of nineteen polymorphic microsatellite markers for rainbow trout (oncorhynchus mykiss). Animal Genetics. 34(2):153-156.
CHARACTERIZATION OF THIRTY EIGHT POLYMORPHIC MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) -
Palti, Y., Fincham, M.R., Rexroad Iii, C.E. 2002. Characterization of thirty eight polymorphic microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 2(4):449-452.
REVIEW: STATUS AND OPPORTUNITIES FOR GENOMIC RESEARCH WITH RAINBOW TROUT -
Rexroad III, C.E., Palti, Y., Thorgaard, G.H. 2002. Review: status and opportunities for genomic research with rainbow trout. Comparative Biochemistry and Physiology. 133(4):609-646.
STATUS AND OPPORTUNITIES FOR GENOMICS RESEARCH WITH RAINBOW TROUT -
Overturf, K.E., Rexroad Iii, C.E., Palti, Y., Thorgaard, Buhler, Bailey, Williams, Kaattari, Hansen, Hardy 2002. Status and opportunities for genomics research with rainbow trout. Comparative Biochemistry and Physiology. Bol 133, Issue 4 p. 609-646.
MOLECULAR CHARACTERIZATION OF LYSOZYME TYPE II GENE IN RAINBOW TROUT. -
Mitra, A., Foster-Frey, J. A., Wells,K. D., Rexroad,C. E. III, Wells,K. D. and Wall,R. J. (2003) Molecular Characterization lysozyme type II gene in rainbow trout (Oncorhynchus mykiss): Evidence of Gene Duplication. Animal Biotechnology 14:7-12.
COMBINING GENETICS AND GENOMICS FOR ENHANCING COOL AND COLDWATER AQUACULTURE PRODUCTION -
Rexroad III, C.E., Silverstein, J. 2002. Combining genetics and genomics for enhancing cool and coldwater aquaculture production. Proceedings of the International Conference on Recirculating Aquaculture. July 17-21, 2002. Book of Abstracts. p. 133-142
COMPARISON OF GROWTH PERFORMANCE, IMMUNOLOGICAL RESPONSE AND GENETIC DIVERSITY OF FIVE STRAINS OF RAINBOW TROUT (ONCORHYNCHUS MYKISS). -
COMPARATIVE MAPPING OF BTA15 AND HSA11 INCLUDING A REGION CONTAINING A QTL FOR MEAT TENDERNESS -
ISOLATION OF RAINBOW TROUT MICROSATELLITE MARKERS FROM ENRICHED LIBRARIES -
Rexroad III, C.E. 2001. Isolation of rainbow trout microsatellite markers from enriched libraries. International Plant and Animal Genome IX Conference. Jan 13-17, 2001. Abstract P613. p.214.
BOVINE CAPN1 MAPS TO A REGION OF BTA29 CONTAINING A QTL FOR MEAT TENDERNESS -
RAPID COMMUNICATION: MAPPING OF NINE BOVINE MICROSATELLITE MARKERS OBTAINED FROM LARGE INSERT GENOMIC LIBRARIES -
BOVINE CAPN1 MAPS TO A REGION OF BTA29 CONTAINING A QTL FOR MEAT TENDERNESS -
BOVINE UCP2 AND UCP3 MAP TO BTA15 (SHORT COMMUNICATION) -
FINE MAPPING OF A WARNER-BRATZLER SHEAR FORCE QUANTITATIVE TRAIT LOCUS ON BOVINE CHROMOSOME 15 -
THE PROCESS AND USE OF FUNCTIONAL GENOMICS IN BEEF CATTLE: SO YOU HAVE A QTL, NOW WHAT? -
FINE MAPPING OF THE OVINE CALLIPYGE LOCUS -
FINE MAPPING OF A WARNER-BRATZLER SHEAR FORCE QTL ON BTA15 -
Last Modified: 8/26/2016
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