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United States Department of Agriculture

Agricultural Research Service

Brian Scheffler
COMPUTATIONAL MOLECULAR BIOLOGIST


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Amplicon based RNA interference targeting V2 gene of cotton leaf curl Kokhran virus-Burewala strain can provide resistance in transgenic cotton plants -
Yasmeen, A., Kiani, S., Butt, A., Rao, A.Q., Akram, F., Ahmad, A., Nasir, I.A., Husnain, T., Mansoor, S., Amin, I., Zubair, M., Tahir, M.N., Akhtar, S., Scheffler, J.A., Scheffler, B.E. 2016. Amplicon based RNA interference targeting V2 gene of cotton leaf curl Kokhran virus-Burewala strain can provide resistance in transgenic cotton plants. Molecular Biotechnology. DOI 10.1007/s12033-016-9980-8.
Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan -
Zaidi, S.S., Shafiq, M., Amin, I., Scheffler, B.E., Scheffler, J.A., Briddon, R.W., Mansoor, S. 2016. Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan. PLoS One. DOI:10.1371/journal.pone.0155520.
The channel catfish genome sequenc provides insights into the evolution of scale formation in teleosts -
Liu, Z., Liu, S., Yao, J., Bao, L., Jiang, C., Want, R., Sun, L., Li, Y., Zhang, Y., Zhang, J., Zhou, T., Zeng, Q., Fu, Q., Gao, S., Li, N., Koren, S., Jiang, Y., Zimim, A., Xu, P., Phillippy, A., Geng, X., Song, L., Sun, F., Li, C., Want, X., Chen, A., Jin, Y., Yuan, Z., Yang, Y., Tan, S., Peatman, E., Lu, J., Qin, Z., Dunham, R., Li, Z., Sonstegard, T.S., Feng, J., Danzmann, R.G., Schroeder, S.G., Scheffler, B.E., Duke, M.V., Ballard, L.L., Kucuktas, H., Kaltenboeck, L., Liu, H., Armbruster, J., Xie, Y., Kirby, M.A., Tian, Y., Moore Flanagan, M.E., Mu, W., Waldbieser, G.C. 2016. The channel catfish genome sequenc provides insights into the evolution of scale formation in teleosts. Nature Communications. doi:10.1038/ncomms11757.
RNA interference based approach to down regulate Osmoregulators of whitefly Bemisia tabaci: potential technology for the control of whitefly Reprint Icon -
Raza, A., Malik, H., Shafiq, M., Amin, I., Scheffler, J.A., Scheffler, B.E., Mansoor, S. 2016. RNA interference based approach to down regulate Osmoregulators of whitefly Bemisia tabaci: potential technology for the control of whitefly. PLoS One. 11:e0153883.
Workflow to study genetic biodiversity of aflatoxigenic Aspergillus spp. in Georgia, USA -
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut -
Bertioli, D., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E., Dash, S., Liu, X., Barkley, N.L., Guo, B., Scheffler, B.E., et al. 2016. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. 48:438-446. doi: 10.1038/ng.3517.
Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set -
Hinze, L.L., Gazave, E., Gore, M.A., Fang, D.D., Scheffler, B.E., Yu, J., Jones, D.C., Frelichowski, J.E., Percy, R.G. 2016. Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set. Journal of Heredity. 107(3):274-286.
Application of genomic, transcriptomic and metabolomic technologies in Arachis species -
Chu, Y., Clevenger, J., Hovav, R., Wang, J., Scheffler, B.E., Jackson, S., Ozias-Akins, P. 2016. Peanuts: Genetics, Processing, and Utilization. San Diego, CA: Elsevier. Book Chapter (7). 30 p.
Virus-induced gene silencing (VIGS) in cultivated cotton (Gossypium spp.) using Tobacco rattle virus (TRV) Reprint Icon -
Mustafa, R., Shafiq, M., Mansoor, S., Briddon, R.W., Scheffler, B.E., Scheffler, J.A., Amin, I. 2016. Virus-induced gene silencing (VIGS) in cultivated cotton (Gossypium spp.) using Tobacco rattle virus (TRV). Molecular Biotechnology. 58:65–72, DOI 10.1007/s12033-015-9904-z.
Analysis of genetic diversity and population structure for the native tree Viburnum rufidulum occurring in Kentucky and Tennessee -
Genomic resources for water yam (Dioscorea alata L.): analyses of EST-Sequences, De Novo sequencing and GBS libraries -
Saski, C.A., Bhattacharjee, R., Scheffler, B.E., Asiedu, R. 2015. Genomic resources for water yam (Dioscorea alata L.): analyses of EST-Sequences, De Novo sequencing and GBS libraries. PLoS One. doi:10.1371/journal.pone.0134031.
Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall sythesis, represses lignification, and prolongs elongation Reprint Icon -
Tuttle, J.R., Nah, G., Duke, M.V., Alexander, D.C., Guan, X., Song, Q., Chen, Z.J., Scheffler, B.E., Haigler, C.H. 2015. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall sythesis, represses lignification, and prolongs elongation. Biomed Central (BMC) Genomics. 16:477. doi:10.1186/s12864-015-1708-9.
Development of a large set of microsatellite markers in Zapote Maney (Pouteria sapota (Jacq.) (H.E. Moore & Stearn) and their potential use in the study of the species -
Arias De Ares, R.S., Castillo, J.M., Sobolev, V., Blancarte-Jasso, N.H., Simpson, S.A., Ballard, L.L., Duke, M.V., Liu, X.F., Irish, B.M., Scheffler, B.E. 2015. Development of a large set of microsatellite markers in Zapote Maney (Pouteria sapota (Jacq.) (H.E. Moore & Stearn) and their potential use in the study of the species. Molecules. 20(60):11400-11417.
Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences -
Gardner, E.M., Laricchia, K.M., Murphy, M., Ragone, D., Scheffler, B.E., Simpson, S.A., Williams, E., Zerega, N.C. 2015. Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences. Applications in Plant Sciences. 3(9):1500049. doi:10.3732/apps.1500049.
Transcriptomic changes in zebrafish embryos and larvae following benzo[a]pyrene exposure -
Fang, X., Corrales, J., Thornton, C., Clerk, T., Scheffler, B.E., Willett, K.L. 2015. Transcriptomic changes in zebrafish embryos and larvae following benzo[a]pyrene exposure. Toxicological Sciences. 146(2):395-411. doi: 10.1093/toxsci/kfv105..
The first nearly cryptic Scorpionfly (Mecoptera: Panorpidae) from North America -
Bicha, W., Schiff, N., Lancaster, A., Scheffler, B.E. 2015. The first nearly cryptic Scorpionfly (Mecoptera: Panorpidae) from North America. Zootaxa. 3973(3):591–600. doi.org/10.11646/zootaxa.3973.3.12.
Fluorescence- and capillary electrophoresis (CE)-based SSR DNA fingerprinting and a molecular identity database for the Louisiana sugarcane industry -
Pan, Y., Scheffler, B.E., Dufrene Jr, E.O., Waguespack, H., Grisham, M.P. 2015. Fluorescence- and capillary electrophoresis (CE)-based SSR DNA fingerprinting and a molecular identity database for the Louisiana sugarcane industry. Journal of the American Society of Sugar Cane Technologists. 35:51.
Ecology, Behavior and Bionomics: First Genotyping of Spodoptera frugiperda (J. E. Smith)(Lepidoptera: Noctuidae) Progeny from Crosses between Bt-Resistant and Bt-Susceptible Populations, and 65-Locus Discrimination of Isofami -
Arias De Ares, R.S., Portilla, M., Ray, J.D., Blanco, C.A., Simpson, S.A., Scheffler, B.E. 2015. Ecology, Behavior and Bionomics: First Genotyping of Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae) Progeny from Crosses between Bt-Resistant and Bt-Susceptible Populations, and 65-Locus Discrimination of Isofamilies. The Journal of Botanical Society. 4:18-29.
BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping -
Hulse-Kemp, A.M., Hamid, A., Stoffel, K., Pepper, A.E., Saski, C., Scheffler, B.E., Fang, D.D., Chen, Z., Van Deynze, A., Zheng, X., Stelly, D.M. 2015. BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping. Genes, Genomes, and Genomics. 5:1095-1105. doi:10.1534/g3.115.017749/-/DC1.
Biotechnology in weed control -
Duke, S.O., Scheffler, B.E., Boyette, C.D., Dayan, F.E. 2015. Biotechnology in weed control. In: Kirk Othmer Encyclopedia for Technical Technology, Wiley Interscience, New York. p. 1-25. DOI: 10.1002/0471238961.
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement -
Zhang, T., Hu, Y., Jiang, W., Fang, L., Guan, X., Chen, J., Zhang, J., Saski, C., Scheffler, B.E., Stelly, D.M., Hulse-Kemp, A.M., Wan, Q., Liu, B., Liu, C., Wang, S., Pan, M., Wang, Y., Wang, D., Ye, W., Chang, L., Zhang, W., Song, Q., Kirkbride, R.C., Chen, X., Dennis, E., Llewellyn, D.J., Peterson, D.G., Thaxton, P., Jones, D.C., Wang, Q., Xu, X., Zhang, H., Wu, H., Zhou, L., Mei, G., Chen, S., Tian, Y., Xiang, D., Li, X., Ding, J., Zuo, Q., Tao, L., Liu, Y., Li, J., Lin, Y., Hui, Y., Cao, Z., Cai, C., Zhu, X., Jiang, Z., Zhou, B., Guo, W., Li, R., Chen, Z. 2015. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature Biotechnology. 33(5):531-537. doi:10.1038/nbt.3207.
Development of microsatellites from Fothergilla xintermedia (Hamamelidaceae) and cross transfer to four other genera within Hamamelidaceae Reprint Icon -
Hatmaker, E., Wadl, P.A., Mantooth, K., Scheffler, B.E., Ownley, B.H., Trigiano, R.N. 2015. Development of microsatellites from Fothergilla xintermedia (Hamamelidaceae) and cross transfer to four other genera within Hamamelidaceae. Applications in Plant Sciences. 3(4):1400123. doi.org/10.3732/apps.1400123. Availiable: http://www.bioone.org/doi/full/10.3732/apps.1400123.
Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection -
Duitama, J., Silva, A., Sanabria, Y., Cruz, D., Quintero, C., Ballen, C., Lorieux, M., Scheffler, B.E., Farmer, A., Torres, E., Oard, J., Tohme, J. 2015. Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection. PLoS One. 10(4):e0124617. doi:10.1371/journal.pone.0124617.
RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean -
Horvath, D.P., Hansen, S.A., Moriles-Miller, J.C., Pierik, R., Yan, C., Clay, D.E., Scheffler, B., Clay, S.A. 2015. RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean. New Phytologist. 207:196-210. doi:10.1111/nph.13351.
Diversity of the breadfruit complex (Artocarpus, Moraceae): Genetic characterization of critical germplasm -
Zerega, N., Wiesner-Hanks, T., Ragone, D., Irish, B.M., Scheffler, B.E., Simpson, S.A., Zee, F.T. 2015. Diversity of the breadfruit complex (Artocarpus, Moraceae): Genetic characterization of critical germplasm. Tree Genetics and Genomes. doi: 10.1007/s11295-014-0824-z.
Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection -
Hinze, L.L., Fang, D.D., Gore, M.A., Scheffler, B.E., Yu, J., Frelichowski, J.E., Percy, R.G. 2015. Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection. Theoretical and Applied Genetics. 128(2):313-327.
Development of microsatellites from Cornus mas L. (Cornaceae) and characterization of genetic diversity of cornelian cherries from China, central Europe, and the United States Reprint Icon -
Wadl, P.A., Szyp-Borowska, I., Piórecki, N., Schlarbaum, S.E., Scheffler, B.E., Trigiano, R.N. 2014. Development of microsatellites from Cornus mas L. (Cornaceae) and characterization of genetic diversity of cornelian cherries from China, central Europe, and the United States. Scientia Horticulturae. 179:314-320.
Characterization of 12 polymorphic microsatellite loci of Pityopsis graminifolia var. latifolia Reprint Icon -
Boggess, S.L., Wadl, P.A., Hadziabdic, D., Scheffler, B.E., Windham, A.S., Klingeman, W.E., Trigiano, R.N. 2014. Characterization of 12 polymorphic microsatellite loci of Pityopsis graminifolia var. latifolia. Conservation Genetics. 6(4):1043-1045. DOI: 10.1007/s12686-014-0282-9.
Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton) -
Guo, H., Wang, X., Gundlach, H., Mayer, K.F., Peterson, D.G., Scheffler, B.E., Chee, P.W., Paterson, A.H. 2014. Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton). Genetics. 197:1153-1163. do1 1 0.1 534/genetics.114.1 66124/-/DC 1.
Musa spp. germplasm management: microsatellite fingerprinting of USDA-ARS National Plant Germplasm System (NPGS) collection -
Irish, B.M., Cuevas, H.E., Simpson, S.A., Scheffler, B.E., Sardos, J., Ploetz, R., Goenaga, R.J. 2014. Musa spp. germplasm management: microsatellite fingerprinting of USDA-ARS National Plant Germplasm System (NPGS) collection. Crop Science. 54:2140-2151.
Complete genome sequence of an attenuated Sparfloxacin-resistant Streptococcus agalactiae strain 138spar -
Wei Pridgeon, Y., Zhang, D., Zhang, L., Ballard, L.L., Scheffler, B.E. 2014. Complete genome sequence of an attenuated Sparfloxacin-resistant Streptococcus agalactiae strain 138spar. Genbank. Accession No. CP007565.1.
Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure -
Corrales, J., Fang, X., Thornton, C., Mei, W., Barbazuk, B.W., Duke, M.V., Scheffler, B.E., Willett, K.L. 2014. Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure. Comparative Biochemistry and Physiology. Part C 163 (2014): 37-46.
Using RNA-seq transcriptome profiling in support of field based strategies to improve cotton productivity under water deficit stress -
Campbell, B.T., Bowman, M., Park, W., Bauer, P.J., Scheffler, B.E., Udall, J., Jones, D.C. 2014. Using RNA-seq transcriptome profiling in support of field based strategies to improve cotton productivity under water deficit stress. In: Proceeedings of the Plant and Animal Genome XXII Conference, January 10-15, San Diego, CA. p918.
RNA-seq transcriptome profiling of upland cotton (Gossypium hirsutum) root tissue under water-deficit stress -
Bowman, M.J., Park, W., Bauer, P.J., Udall, J.A., Page, J.T., Raney, J., Scheffler, B.E., Jones, D.C., Campbell, B.T. 2013. RNA-seq transcriptome profiling of upland cotton (Gossypium hirsutum) root tissue under water-deficit stress. PLoS One. 8:e82634.
The haustorial transcriptomes of Uromyces appendiculatus and Phakopsora pachyrhizi and their candidate effector families Reprint Icon -
Link, T.I., Lang, P., Scheffler, B.E., Duke, M.V., Graham, M.A., Cooper, B., Tucker, M.L., Van De Mortel, M., Voegele, R.T., Mendgen, K., Baum, T.J., Whitham, S.A. 2014. The haustorial transcriptomes of Uromyces appendiculatus and Phakopsora pachyrhizi and their candidate effector families. Molecular Plant Pathology. 15(4):379-393. DOI:10.1111/mpp.12099.
Complete genome sequence of channel catfish gastrointestinal sepicemia isolate Edwardsiella tarda C07-087 Reprint Icon -
Tekedar, H.C., Karsi, A., Williams, M.L., Vamenta, S., Banes, M.M., Duke, M.V., Scheffler, B.E., Lawrence, M.L. 2013. Complete genome sequence of channel catfish gastrointestinal sepicemia isolate Edwardsiella tarda C07-087. American Society for Microbiology. 1(6):e00959-13. doi:10.1128/genomeA.00959-13.
Candidate gene association mapping of Sclerotinia stalk rot resistance in sunflower (Helianthus annuus L.) uncovers the importance of COI1 homologs -
Talukder, Z.I., Hulke, B.S., Qi, L., Scheffler, B.E., Pegadaraju, V., McPhee, K., Gulya, T.J. 2014. Candidate gene association mapping of Sclerotinia stalk rot resistance in sunflower (Helianthus annuus L.) uncovers the importance of COI1 homologs. Theoretical and Applied Genetics. 127:193-209.
'Ebony Embers', 'Ebony Fire', 'Ebony Flame','Ebony Glow' and 'Ebony and Ivory' Dark-Leaf Crapemyrtles -
Pounders Jr, C.T., Scheffler, B.E., Rinehart, T.A. 2013. 'Ebony Embers', 'Ebony Fire', 'Ebony Flame','Ebony Glow' and 'Ebony and Ivory' Dark-Leaf Crapemyrtles. HortScience. 48(12)1568-1570.
Integrated genomic and phenomic approaches for improving cotton productivity under water deficit stress -
Campbell, B.T., Park, W., Bowman, M.J., Bauer, P.J., Scheffler, B.E., Udall, J., Jones, D.C. 2013. Integrated genomic and phenomic approaches for improving cotton productivity under water deficit stress. In: Proceedings of the Interdrought-IV Research conference, September 6-8, Perth, australia. 2013 CDROM.
Developmental regulation of diacylglycerol acyltransferase family gene expression in tung tree tissues -
Cao, H., Shockey, J.M., Klasson, K.T., Chapital, D.C., Mason, C.B., Scheffler, B.E. 2013. Developmental regulation of diacylglycerol acyltransferase family gene expression in tung tree tissues. PLoS ONE 8(10):e76946. doi: 10.1371/journal.pone.0076946.
Submission to NCBI Sequence Read Archive (SRA): Raw read files from manuscript “RNA-seq transcriptome profiling of upland cotton (Gossypium hirsutum) root tissue under water deficit stress” NCBI SRA Accession No. PRJNA210770 -
Bowman, M.J., Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T., Page, J.T., Udall, J.A., Raney, J. 2013. Submission to NCBI Sequence Read Archive (SRA): Raw read files from manuscript “RNA-seq transcriptome profiling of upland cotton (Gossypium hirsutum) root tissue under water deficit stress” NCBI SRA Accession No. PRJNA210770. National Center for Biotechnology Information (NCBI). National Center for Biotechnology Information. SRA PRJNA210770.
Transcriptome sequencing of Hydrangea macrophylla to uncover genes related to reblooming and powdery mildew resistance -
Rinehart, T.A., Reed, S.M., Scheffler, B.E. 2013. Transcriptome sequencing of Hydrangea macrophylla to uncover genes related to reblooming and powdery mildew resistance. Acta Horticulture Proceedings. 3:30-37.
Global and gene specific DNA methylation changes during zebrafish development Reprint Icon -
Fang, X., Corrales, J., Thornton, C., Scheffler, B.E., Willett, K.L. 2013. Global and gene specific DNA methylation changes during zebrafish development. Comparative Biochemistry and Physiology. Part B. 166:99-108. DOI.org/10.1016/j.cbpb.2013.07.007.
Drought stress related gene expression patterns and sub-genome localization of five aquaporin genes in upland cotton (Gossypium hirsutum) -
Bowman, M.J., Park, W., Bauer, P.J., Udall, J.A., Page, J.T., Scheffler, B.E., Campbell, B.T. 2013. Drought stress related gene expression patterns and sub-genome localization of five aquaporin genes in upland cotton (Gossypium hirsutum). In: Proceedings of the 2013 Joint Annual Meeting of the National Association of Plant Breeders and the Plant Breeding Coordinating Committee, Tampa, FL. June 2-5. 20.
Molecular characterization of Uzbekistan isolates of fusarium oxysporum f. sp. vasinfectum -
Egamberdiev, S.S., Ulloa, M., Saha, S., Salakhudinov, I.B., Abdullaev, A., Glukhova, L.A., Adylova, A.T., Scheffler, B.E., Jenkins, J.N., Abdurakhmonov, I.Y. 2013. Molecular characterization of Uzbekistan isolates of fusarium oxysporum f. sp. vasinfectum. Journal of Plant Science and Molecular Breeding. 2:3.
Isolation and characterization of microsatellite Loci for Cornus sanguniea (Cornaceae) 1 -
Wadl, P.A., Hatmaker, A., Fussi, B., Scheffler, B.E., Trigiano, R.N. 2013. Isolation and characterization of microsatellite Loci for Cornus sanguniea (Cornaceae) 1. American Journal of Botany. 1(9):1300012. doi:10.3732/apps.1300012.
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color -
Motamayor, J.C., Mockaitis, K., Schmutz, J., Haiminen, N., Livinstone Iii, D., Cornejo, O., Findley, S., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B.E., Stack, J.C., Feltus, A., Mustiga, G., Amores, F., Phillips, W., Marelli, J., May, G.D., Shapiro, H., Ma, J., Bustamante, C.D., Schnell, R.J., Main, D., Gilbert, D., Parida, L., Kuhn, D.N. 2013. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biology. Genome Biology 2013, 14:R53 doi:10.1186/gb-2013-14-6-r53.
Development and characterization of simple sequence repeats for Bipolaris sokiniana and cross transferability to related species Reprint Icon -
Fajolu, O.L., Wadl, P.A., Vu, A.L., Gwinn, K.D., Scheffler, B.E., Trigiano, R.N., Ownley, B.H. 2013. Development and characterization of simple sequence repeats for Bipolaris sokiniana and cross transferability to related species. Mycologia. 105(5):1164-1173. DOI: 10.3852/12-210.
Development and characterization of seashore paspalum SSR markers -
Harris-Shultz, K.R., Raymer, P., Scheffler, B.E., Arias De Ares, R.S. 2013. Development and characterization of seashore paspalum SSR markers. Crop Science. 53:2679-2685.
Camelina seed transcriptome: Tool for meal and oil improvement and translational research -
Nguyen, T., Collins-Silva, J.E., Macrander, J., Yang, W., Nazarenus, T.J., Nam, J., Jaworski, J.G., Lu, C., Scheffler, B.E., Mockaitis, K., Cahoon, E.B. 2013. Camelina seed transcriptome: Tool for meal and oil improvement and translational research. Plant Biotechnology Journal. pp. 1-11.
Benzo[a]pyrene decreases global and gene specific DNA methylation during zebrafish development -
Fang, X., Thornton, C., Scheffler, B.E., Willett, K.L. 2013. Benzo[a]pyrene decreases global and gene specific DNA methylation during zebrafish development. Environmental Toxicology and Pharmacology. p. 40-50.
Tissue specific transcriptome changes during water deficit stress in tetraploid cotton -
Bowman, M.J., Park, W., Bauer, P.J., Udall, J.A., Page, J.T., Raney, J., Scheffler, B.E., Campbell, B.T. 2013. Tissue specific transcriptome changes during water deficit stress in tetraploid cotton [Abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 7-10, San Antonio, Texas. 1255.
The Genome of the Most Widely Cultivated Cacao Type and Its Use to Identify Candidate Genes Regulating Traits: Pod Color as an Example -
Motamayor, J., Mockaitis, K., Schmutz, J., Haiminen, N., Livingstone Iii, D.S., Cornejo, O., Findley, S.D., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B.E., Feltus, A.F., Amores, F.M., Phillips, W., Marelli, J., May, G.D., Shapiro, H., Ma, J., Bustamante, C., Schnell, R.J., Main, D., Gilbert, D., Parida, L., Kuhn, D.N. 2013. The Genome of the Most Widely Cultivated Cacao Type and Its Use to Identify Candidate Genes Regulating Traits: Pod Color as an Example . Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.
The Genome of the Most Widely Cultivated Cacao Type and Its Use to Identify Candidate Genes Regulating Traits: Pod Color as an Example -
Motamayor Arias, J., Mockaitis, K., Schmutz, J., Haiminen, N., Livingstone Iii, D.S., Cornejo, O., Findley, S.D., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B.E., Feltus, A.F., Amores, F.M., Phillips, W., Marelli, J., May, G., Shapiro, H., Ma, J., Bustamante, C., Schnell, R.J., Main, D., Gilbert, D., Parida, L., Kuhn, D.N. 2013. The Genome of the Most Widely Cultivated Cacao Type and Its Use to Identify Candidate Genes Regulating Traits: Pod Color as an Example. Meeting Abstract. Plant and Animal Genome Meeting XXI, January 12-16, 2013 San Diego, CA.
Molecular diversity among G. hirsutum accessions in the Gossypium Diversity Reference Set -
Molecular properties of the class III subfamily of acyl-coenyzme A binding proteins from tung tree (Vernicia fordii) Reprint Icon -
Pastor, S., Sethumadhavan, K., Ullah, A.H.J., Gidda, S., Cao, H., Mason, C., Chapital, D., Scheffler, B., Mullen, R., Dyer, J., Shockey, J. 2013. Molecular properties of the class III subfamily of acyl-coenyzme A binding proteins from tung tree (Vernicia fordii). Plant Science. 203-204:79-88.
Development of microsatellite loci in Artocarpus altilis (Moraceae) and cross-amplification in congeneric species Reprint Icon -
Witherup, C., Ragone, D., Wiesner-Hanks, T., Irish, B.M., Scheffler, B.E., Simpson, S.A., Zee, F.T., Zuberi, M., Zerega, N. 2013. Development of microsatellite loci in Artocarpus altilis (Moraceae) and cross-amplification in congeneric species. Applications in Plant Sciences. 1(7):1200423. doi: org/10.3732/apps.1200423.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres -
Paterson, A.H., Wendel, J.F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K.C., Shu, S., Udall, J., Duke, M.V., Scheffler, B.E., Scheffler, J.A. 2012. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 492:423-428.
Sub-genomic level sequence analysis of the aquaporin multi-gene family in cotton -
Park, W., Bauer, P.J., Scheffler, B.E., Bowman, M.J., Campbell, B.T. 2012. Sub-genomic level sequence analysis of the aquaporin multi-gene family in cotton [Abstract]. In: Proceedings of the International Cotton Genome Initiative 2012 Conference, October 8-12, Raleigh, North Carolina. 50. 2012 CDROM.
Submission to GenBank a set of differentially expressed transcript derived fragments (TDFs) upon water deficit stress in Gossypium hirsutum L - GenBank Accession No. JK512212-JK512358 -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2012. Submission to GenBank a set of differentially expressed transcript derived fragments (TDFs) upon water deficit stress in Gossypium hirsutum L - GenBank Accession No. JK512212-JK512358. National Center for Biotechnology Information (NCBI).
Transcriptome sequencing of Hydrangea macrophylla to uncover genes related to reblooming and powdery mildew resistance -
Rinehart, T.A., Reed, S.M., Scheffler, B.E. 2012. Transcriptome sequencing of Hydrangea macrophylla to uncover genes related to reblooming and powdery mildew resistance. International Hydrangea Conference. vol3, pg 9.
Transcriptome sequencing of flowering dogwodd (Cornus florida) for development of EST-SSRs -
Wadl, P.A., Rinehart, T.A., Scheffler, B.E., Trigiano, R.N. 2012. Transcriptome sequencing of flowering dogwodd (Cornus florida) for development of EST-SSRs. International Symposium on Woody Ornamentals of the Temperate Zone. vol2, pg 66.
Transcriptome sequencing of Hydrangea macrophylla -
Rinehart, T.A., Reed, S.M., Scheffler, B.E. 2012. Transcriptome sequencing of Hydrangea macrophylla. International Symposium on Woody Ornamentals of the Temperate Zone. vol 2, pg 67.
Transcriptome sequencing of flowering dogwood (Cornus florida) for development of EST-SSRs -
Wadl, P.A., Rinehart, T.A., Scheffler, B.E., Trigiano, R. 2013. Transcriptome sequencing of flowering dogwood (Cornus florida) for development of EST-SSRs. Acta Horticulture Proceedings. 990:265-270.
Development and characterization of seashore paspulum SSR markers and identification of markers associated with salt tolerance -
Harris-Shultz, K.R., Raymer, P., Duke, M.V., Ballard, L.L., Scheffler, B.E., Arias De Ares, R.S. 2012. Development and characterization of seashore paspulum SSR markers and identification of markers associated with salt tolerance. Visions for a Sustainable Planet. ASA, CSSA, and SSSA 2012 International Annual Meetings. Oct. 21-24, 2012, Cincinnati, OH. Agronomy Abstracts. p. 143.
Genome-wide identification of differentially expressed genes under water deficit stress in Upland cotton (Gossypium hirsutum L.) -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2012. Genome-wide identification of differentially expressed genes under water deficit stress in Upland cotton (Gossypium hirsutum L.). Biomed Central (BMC) Plant Biology. Available: http://www.biomedcentral.com/1471-2229/12/90.
Genetic diversity assessment of Musa spp. germplasm using SSR markers -
Irish, B.M., Scheffler, B.E., Goenaga, R.J. 2012. Genetic diversity assessment of Musa spp. germplasm using SSR markers. HortScience 47(9):S342.
Microsatellite markers in plant pathogenic fungi -
Arias, R.S., Ray, J.D., Mengistu, A., Glynn, N.C., Scheffler, B.E. 2012. Microsatellite markers in plant pathogenic fungi. Meeting Proceedings.
Analysis of the aquaporin gene family in cotton -
Park, W., Bauer, P.J., Scheffler, B.E., Campbell, B.T. 2012. Analysis of the aquaporin gene family in cotton [abstract]. In: Proceedings of the American Society of Plant Biologists Southern Section Annual Meeting, March 3-5, 2012, Myrtle Beach, South Carolina.
Transcriptomes of Lolium/Schedonorus/Festuca species -
Dinkins, R.D., Hesse, U., Arnaoudova, E., Nagabhyru, P., Moore, N., Liu, J., Jaromczyk, J., Zeng, Z., Liu, J., Dai, X., Zhao, P.X., Scheffler, B.E., Jaromczyk, J., Schardl, C.L. 2012. Transcriptomes of Lolium/Schedonorus/Festuca species. International Symposium on Fungal Endophytes of Grasses. ISBNL 978-0-9754303-6-1.
Development of a core set of SSR markers for the characterization of Gossypium germplasm -
Yu, J., Fang, D.D., Kohel, R.J., Ulloa, M., Hinze, L.L., Percy, R.G., Zhang, J., Chee, P., Scheffler, B.E., Jones, D.C. 2012. Development of a core set of SSR markers for the characterization of Gossypium germplasm. Euphytica. 187(2):203-213.
MiRNAs from cotton roots infected with Meloidogyne incognita -
Shapulatov, U.M., Abdusalom, M., Saha, S., Wubben, M., Jenkins, J.N., Buriev, Z.T., Ulloa, M., Scheffler, B.E., Abdurakhmonov, I.Y. 2012. MiRNAs from cotton roots infected with Meloidogyne incognita [abstract]. National Cotton Council Beltwide Cotton Conference. p. 730.
Genetic diversity in the U.S. Cotton Germplasm Collection as revealed by SSR markers -
Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina -
Trigiano, R.N., Wadl, P.A., Dean, D., Hadziabdic, D., Scheffler, B.E., Runge, F., Telle, S., Thines, M., Ristaino, J., Spring, O. 2012. Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina. Mycological Society of America. 104(3):633-640.
High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform -
Thomson, M.J., Zhao, K., Wright, M., McNally, K.L., Rey, J., Tung, C., Reynolds, A., Scheffler, B.E., Eizenga, G.C., McClung, A.M., Kim, H., Ismail, A.M., Ocampo, M., Mojica, C., Reveche, M., Dilla-Ermita, C.J., Mauleon, R., Leung, H., Bustamante, C., McCouch, S.R. 2011. High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform. Molecular Breeding. 29:875-886. doi: 10.1007/s11032-011-9663-x.
High-throughput SNP genotyping for breeding applications in rice using the BeadXpress platform -
Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina -
Trigiano, R.N., Wadl, P.A., Dean, D., Hadziabdic, D., Scheffler, B.E., Runge, F., Telle, S., Thines, M., Ristaino, J., Spring, O. 2012. Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina. Mycologia. 104(3):633-640.
Development of microsatellite loci for the endangered species Pityopsis ruthii (Asteraceae)1 -
Wadl, P.A., Dattilo, A.J., Scheffler, B.E., Trigiano, R.N. 2011. Development of microsatellite loci for the endangered species Pityopsis ruthii (Asteraceae)1. American Journal of Botany. 0:e1-e4.
Development and characterization of sixteen microsatellite loci for Geosmithia morbida, the causal agent of thousand canker disease in black walnut (Juglans nigra) -
Hadziabdic, D., Wadl, P.A., Boggess, S.L., Scheffler, B.E., Windham, M.T., Trigiano, R.N. 2011. Development and characterization of sixteen microsatellite loci for Geosmithia morbida, the causal agent of thousand canker disease in black walnut (Juglans nigra). Conservation Genetics. 4(2):287-289.
Screening and characterization of eleven novel microsatellite markers from Viburnum dilatatum -
Dean, D., Wadl, P.A., Trigiano, R., Wang, X., Klingeman, W., Ownley, B.H., Rinehart, T.A., Scheffler, B.E. 2011. Screening and characterization of eleven novel microsatellite markers from Viburnum dilatatum. HortScience. 46(11):1456-1459.
QTL mapping for milling quality in elite western U.S. rice germplasm -
Nelson, J.C., Jodari, F., Roughton, A.I., McKenzie, K.S., McClung, A.M., Fjellstrom, R.G., Scheffler, B.E. 2012. QTL mapping for milling quality in elite western U.S. rice germplasm. Crop Science. 52:242-252.
Identification of Candidate Genes in Rice for Resistance to Sheath Blight Disease by Whole Genome Sequencing -
Silva, J., Scheffler, B.E., Sanabria, Y., De Guzman, C., Galam, D., Farmer, A., Woodward, J., May, G., Oard, J. 2012. Identification of Candidate Genes in Rice for Resistance to Sheath Blight Disease by Whole Genome Sequencing. Journal of Theoretical and Applied Genetics. 124(1):63-74.
Registration of "Rex" Southern Long-Grain Rice -
Solomon, W.L., Kanter, D.G., Walker, T.W., Baird, III, G.E., Scheffler, B.E., Lanford, L.S., Shaifer, S. 2012. Registration of "Rex" Southern Long-Grain Rice. Journal of Plant Registrations. 6(1).
Integrating genomics and phenomics to improve abiotic stress tolerance in cotton -
Campbell, B.T., Park, W., Bauer, P.J., Scheffler, B.E. 2011. Integrating genomics and phenomics to improve abiotic stress tolerance in cotton. In: Proceedings of the 2011 Plant Genomics Eurepean Meeting, May 4-7, 2011, Istanbul, Turkey. 2011 CDROM.
Transcriptome sequencing of Hydrangea macrophylla a non-model woody plant and specialty crop -
Rinehart, T.A., Reed, S.M., Scheffler, B.E. 2011. Transcriptome sequencing of Hydrangea macrophylla a non-model woody plant and specialty crop. Botanical Society of America Abstracts. vol 1 pg 92.
Sheath-blight resistance QTLs and in japonica rice germplasm -
Nelson, J., Oard, J.H., Groth, D., Utomo, H., Jia, Y., Liu, G., Moldenhauer, K.K., Correa-Victoria, F.J., Fjellstrom, R.G., Scheffler, B.E., Prado, G.A. 2012. Sheath-blight resistance QTLs and in japonica rice germplasm. Euphytica. 184:23-24. 10.1007/s10681-011-0475-1.
Comparison of whole-genome amplifications for microsatellite genotyping of Rotylenchulus reniformis -
Arias, R.S., Stetina, S.R., Scheffler, B.E. 2011. Comparison of whole-genome amplifications for microsatellite genotyping of Rotylenchulus reniformis. Electronic Journal of Biotechnology. DOI:10.2225/vol14-issue3-fulltext-13.
Generation and analysis of expressed sequence tags(ESTs) for marker development in yam (Dioscores alata L.) -
Narina, S.S., Buyyarapu, R., Kottapalli, R., Sartie, A.M., Moahmed, A., Asiedu, R., Mignouna, H., Sayre, B., Scheffler, B.E. 2011. Generation and analysis of expressed sequence tags(ESTs) for marker development in yam (Dioscores alata L.). Biomed Central (BMC) Genomics. 1471-2164.
Water deficit stress induced gene expression -
Campbell, B.T., Park, W., Bauer, P.J., Scheffler, B.E. 2011. Water deficit stress induced gene expression [abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. p. 725.
Isolation and characterisation of the first microsatellite markers for Cyperus rotundus -
Arias, R.S., Molin, W.T., Ray, J.D., Peel, M., Scheffler, B.E. 2011. Isolation and characterisation of the first microsatellite markers for Cyperus rotundus. Weed Research. 51:451-460.
First microsatellites developed from Spodoptera frugiperda and their potential use for population genetics -
Arias De Ares, R.S., Blanco, C.A., Portilla, M., Snodgrass, G.L., Scheffler, B.E. 2011. First microsatellites developed from Spodoptera frugiperda and their potential use for population genetics. Entomology Society America Annual Meeting. 104(3):516-587.
First microsatellites from Spodoptera frugiperda (Lepidoptera: Noctuidae) and their potential use for population genetics -
Arias, R.S., Blanco, C.A., Portilla, M., Snodgrass, G.L., Scheffler, B.E. 2011. First microsatellites from Spodoptera frugiperda (Lepidoptera: Noctuidae) and their potential use for population genetics. Annals of the Entomological Society of America. 104(3):576-587.
Cocoa/Cotton Comparative Genomics -
ay, G.D., Mudge, J., Crow, J.A., Bharti, A.K., Woodward, J.E., Ramaraj, T., Farmer, A.D., Rice, B.J., Kramer, R.S., Wilkins, T.A., Schmutz, J., Kim, R.W., Mockaitis, K., Saski, C., Scheffler, B.E., Main, D., Jenkins, J., Livingstone, D., Zheng, P., Gilbert, D., Feltus, A., Haiminen, N., Parida, L., Tondo, C.L., Royaert, S.E., Phillips, W., Shapiro, H., Schnell, R.J., Kuhn, D.N., Motamayor, J. 2011. Cocoa/Cotton Comparative Genomics. Annual International Plant & Animal Genome Conference. 2011.
Genomic resources for valuable woody ornamental landscape plants such as hydrangea macrophylla -
Rinehart, T.A., Reed, S.M., Scheffler, B.E. 2011. Genomic resources for valuable woody ornamental landscape plants such as hydrangea macrophylla. Plant and Animal Genome VX Conference Abstracts. W396.
Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection -
Percy, R.G., Fang, D.D., Hinze, L.L., Yu, J., Frelichowski, J.E., Scheffler, B.E., Gore, M.A. 2011. Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. 2011 CDROM.
Advances in molecular breeding of flowering dogwood (Cornus florida L.) -
Wadhl, P.A., Xingwang, X., Saxton, A.M., Rinehart, T.A., Scheffler, B.E., Pantalone, V.R., Trigiano, R.N. 2011. Advances in molecular breeding of flowering dogwood (Cornus florida L.). Plant and Animal Genome Conference. W397.
Differentially expressed genes in drought stressed cotton -
Park, W., Bauer, P.J., Scheffler, B.E., Campbell, B.T. 2010. Differentially expressed genes in drought stressed cotton. In: Proceedings of the American Society of Agronomy-Crop Science Society of America-Soil Science Society of America International Annual Meetings, October 31-November 4, 2010, Long Beach, California. 2010 CDROM.
Development of Mississippi cotton breeding lines resistant to reniform and root-koot nematodes via marker assisted selection -
Wallace, T.P., Thaxton, P.S., Gutierrez, O.A., Scheffler, B.E., Stetina, S.R., Scheffler, J.A. 2011. Development of Mississippi cotton breeding lines resistant to reniform and root-koot nematodes via marker assisted selection. National Cotton Council Beltwide Cotton Conference. pp.742.
Evaluation of genetic diversity and pedigree within crapemyrtle (Lagerstroemia spp.) cultivars using simple sequence repeat (SSR) markers -
Wang, X., Wadl, P.A., Cabrera, R.I., Pounders Jr, C.T., Scheffler, B.E., Pooler, M.R., Rinehart, T.A., Trigiano, R.N. 2011. Evaluation of genetic diversity and pedigree within crapemyrtle (Lagerstroemia spp.) cultivars using simple sequence repeat (SSR) markers. Journal of the American Society for Horticultural Science. 136(2):116-128.
Batch Isolation of Microsatellites for Tropical Plant Species Pyrosequencing -
Arias De Ares, R.S., Irish, B.M., Ballard, L.L., Duke, M.V., Liu, X.F., Simpson, S.A., Scheffler, B.E. 2010. Batch Isolation of Microsatellites for Tropical Plant Species Pyrosequencing. Plant and Animal Genome. Abstract P089.
Metagenomic analysis of the turkey gut RNA virus community Reprint Icon -
Day, J.M., Ballard, L.L., Duke, M.V., Scheffler, B.E., Zsak, L. 2010. Metagenomic analysis of the turkey gut RNA virus community. Virology Journal. 7:313.
Major Pesticide Receptors, Detoxification Enzymes, and Transcriptional Profile in Midgut of the Tobacco Budworm, Heliothis virescens (Lepidoptera: Noctuidae) -
Zhu, Y., Guo, Z., Chen, M., Zhu, K., Liu, X.F., Scheffler, B.E. 2011. Major Pesticide Receptors, Detoxification Enzymes, and Transcriptional Profile in Midgut of the Tobacco Budworm, Heliothis virescens (Lepidoptera: Noctuidae). Insect Molecular Biology. 106:296-307. doi: 10.1016/jip.2010.10.007.
Discriminating microsatellites from Macrophomina phaseolina and their potential association to biological functions -
Arias, R.S., Ray, J.D., Mengistu, A., Scheffler, B.E. 2011. Discriminating microsatellites from Macrophomina phaseolina and their potential association to biological functions. Plant Pathology. 60(4):709-718 DOI:10.1111/j.1365-3059.2010.02421.x.
UPIC + GO: Zeroing in on informative markers -
Ford, D., Arias, R.S., Ballard, L.L., Scheffler, B.E., Duke, M.V., Simpson, S.A., Newsome, A. 2010. UPIC + GO: Zeroing in on informative markers. Eighth Annual Rocky Mountain Bioinformatics Conference, International Society of Computational Biology (ISCB), December 09-11, 2010, Aspen, CO. Meeting Proceedings.
Development of simple sequence repeat markers for Chionanthus retusus (Oleaceae) and effective discrimination of closely related taxa -
Arias, R.S., Techen, N., Rinehart, T.A., Olsen, R.T., Kirkbride, J.H., Scheffler, B.E. 2010. Development of simple sequence repeat markers for Chionanthus retusus (Oleaceae) and effective discrimination of closely related taxa. HortScience. 46(1):23-29.
Discovering genes with potential abiotic stress tolerance applications in cotton -
Campbell, B.T., Park, W., Bauer, P.J., Scheffler, B.E. 2010. Discovering genes with potential abiotic stress tolerance applications in cotton [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, September 21-23, 2010, Canberra, Australia. p. 39.
Interspecific Chromosome Substitution Lines as Genetic Resources for Improvement, Trait Analyses and Genomic Inference -
Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) Reprint Icon -
Tung, C., Zhao, K., Wright, M.K., Ali, M., Jung, J., Kimball, J.A., Tyagi, W., Thomson, M.J., McNally, K., Leung, H., Kim, H., Ahn, S., Reynolds, A., Scheffler, B.E., Eizenga, G.C., McClung, A.M., Bustamante, C.D., McCouch, S.D. 2010. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.). Rice. 3:205–217.
Development and characterization of microsatellites for switchgrass rust fungus (Puccinia emaculata) -
Wadl, P.A., Dean, D., Li, Y., Vito, L.M., Scheffler, B.E., Hadziabdic, D., Windham, M.T., Trigiano, R.N. 2011. Development and characterization of microsatellites for switchgrass rust fungus (Puccinia emaculata). Conservation Genetics. 3:185–188.
Mapping QTL main and interaction influences on milling quality in elite U.S. rice germplasm -
Nelson, J.C., McClung, A.M., Fjellstrom, R.G., Moldenhauer, K.K., Boza, E., Jodari, F., Oard, J.H., Linscombe, S., Scheffler, B.E., Yeater, K.M. 2011. Mapping QTL main and interaction influences on milling quality in elite U.S. rice germplasm. Theoretical and Applied Genetics. 122(2):291-309.
Characterization of novel blast resistant genes for US rice breeding -
Yan, W., Scheffler, B.E., Correll, J.C., Fjellstrom, R.G., Feng, C.D., Jackson, A.K., McClung, A.M. 2010. Characterization of novel blast resistant genes for US rice breeding [abstract]. Proceedings of 5th International Rice Blast Conference, August 11-14, 2010, Little Rock, Arkansas. p. 36.
Functional diversity in fungal fatty acid synthesis the first acetylenase from the Pacific Golden Chanterelle Cantharellus formosus -
Blacklock, B.J., Scheffler, B.E., Shepard, M.R., Jayasuriya, N., Minto, R.E. 2010. Functional diversity in fungal fatty acid synthesis. The first acetylenase from the Pacific Golden Chanterelle, Cantharellus formosus. Journal of Biological Chemistry. 287(37):28442-28449.
Identification of the family of aquaporin genes and their expression in Upland cotton (Gossypium hirsutum L.) Reprint Icon -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Identification of the family of aquaporin genes and their expression in Upland cotton (Gossypium hirsutum L.). Biomed Central (BMC) Plant Biology. 10:142.
Microbial and Antibiotic REsistant Constituents Associated with Biological Aerosols Within A Commercial Poultry House -
Brooks, J.P., McLaughlin, M.R., Scheffler, B.E., Miles, D.M. 2010. Microbial and antibiotic resistant constituents associated with biological aerosols and poultry litter within a commercial poultry house. Science of the Total Environment. 408:4770-4777.
Registration of the MY2 Cypress/LaGrue rice recombinant inbred line mapping population. Journal of Plant Registrations 4(3): 261-265. -
Oard, J.H., Moldenhauer, K.K., Fjellstrom, R.G., Nelson, J., Linscombe, S.D., Silva, J., May, G.D. 2010. Registration of the MY2 Cypress/LaGrue rice recombinant inbred line mapping population. Journal of Plant Registrations. 4(3):1-5.
Submission to GenBank of the Plasma membrane intrinsic protein (PIP) Subfamily in Cotton – GenBank Accession No. GU998827-GU998830 and GenBank Accession TPA;inferential No. BK007045-BK007052 -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Submission to GenBank of the Plasma membrane intrinsic protein (PIP) Subfamily in Cotton – GenBank Accession No. GU998827-GU998830 and GenBank Accession TPA;inferential No. BK007045-BK007052. National Center for Biotechnology Information (NCBI).
Submission to GenBank of the X intrinsic protein (XIP) Subfamily in Cotton – GenBank Accession No. GU998849 -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Submission to GenBank of the X intrinsic protein (XIP) Subfamily in Cotton – GenBank Accession No. GU998849. National Center for Biotechnology Information (NCBI).
Submission to GenBank of the Nodulin 26-like intrinsic protein (NIP) Subfamily in Cotton – GenBank Accession No. GU998840-GU998845 and GenBank Accession TPA;inferential No. BK007061-BK007062 -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Submission to GenBank of the Nodulin 26-like intrinsic protein (NIP) Subfamily in Cotton – GenBank Accession No. GU998840-GU998845 and GenBank Accession TPA;inferential No. BK007061-BK007062. National Center for Biotechnology Information (NCBI).
Submission to GenBank of the Small intrinsic protein (SIP) Subfamily in Cotton – GenBank Accession No. GU998846-GU998848 and GenBank Accession TPA;inferential No. BK007063-BK007064 -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Submission to GenBank of the Small intrinsic protein (SIP) Subfamily in Cotton – GenBank Accession No. GU998846-GU998848 and GenBank Accession TPA;inferential No. BK007063-BK007064. National Center for Biotechnology Information (NCBI).
Submission to GenBank of the Tonoplast membrane intrinsic protein (TIP) Subfamily in Cotton – GenBank Accession No. GU998831-GU998839 and GenBank Accession TPA;inferential No. BK007053-BK007060 -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Submission to GenBank of the Tonoplast membrane intrinsic protein (TIP) Subfamily in Cotton – GenBank Accession No. GU998831-GU998839 and GenBank Accession TPA;inferential No. BK007053-BK007060. National Center for Biotechnology Information (NCBI).
Characterization of twelve microsatellite markers for the native redbud tree (Cercis canadensis) -
Rinehart, T.A., Trigiano, R., Wadl, P., Hadziabdic, D., Pooler, M.R., Scheffler, B.E. 2010. Characterization of twelve microsatellite markers for the native redbud tree (Cercis canadensis). Molecular Ecology Resources. 10(4):751-754.
Drought-related gene expression in Upland cotton -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Drought-related gene expression in Upland cotton [abstract]. Proceedings of the nternational Association for Plant Biotechnology Congress, June 6-11, 2010, St. Louis, Missouri. CDROM.
Development of microsatellite markers from crape myrtle (Lagerstroemia L.) -
Wang, X., Dean, D., Wadl, P., Hadziabdic, D., Scheffler, B.E., Rinehart, T.A., Trigiano, R. 2010. Development of microsatellite markers from Crape Myrtle (Lagerstroemia L.). HortScience. 45(5):842-844.
Characterization of Two Cotton (Gossypium hirsutum) Invertase Genes Reprint Icon -
Taliercio, E.W., Scheffler, J.A., Scheffler, B.E. 2010. Characterization of Two Cotton (Gossypium hirsutum) Invertase Genes. Molecular Biology Reports. 37:3915-3920.
Transcript Analysis of Parasitic Females of the Sedentary Semi-Endoparasitic Nematode Rotylenchulus reniformis -
Wubben, M., Callahan, F.E., Scheffler, B.E. 2010. Transcript Analysis of Parasitic Females of the Sedentary Semi-Endoparasitic Nematode Rotylenchulus reniformis. Molecular and Biochemical Parasitology. 172:31-40.
Toward identification of complete set of aquaporin gene family in cotton - A possible way to improve cotton production -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2010. Toward identification of complete set of aquaporin gene family in cotton - A possible way to improve cotton production. p. 815. In: Proceedings of the Beltwide Cotton Conference, January 4-7, 2010, New Orleans, Louisiana.
DNA Fingerprinting Eastern Redbud Cultivars (Cercis canadensis) Using SSR Markers -
Rinehart, T.A., Scheffler, B.E., Trigiano, R., Pooler, M.R. 2011. DNA Fingerprinting Eastern Redbud Cultivars (Cercis canadensis) Using SSR Markers. Southern Nursery Association Research Conference. 55:40-45.
The need for an assembly pilot project -
Kuhn, D.N., Saski, C., Feltus, F.A., Haiminen, N., Main, D., May, G.D., Schnell Ii, R.J., Motamayor, J.C., Mockaitis, K., Scheffler, B.E., Shapiro, H. 2010. The need for an assembly pilot project. Plant and Animal Genome Conference. 1.
T. cacao Transcriptome Sequencing -
Mockaitis, K., Kuhn, D.N., Main, D., Haiminen, N., May, G., Saski, C., Scheffler, B.E., Schnell Ii, R.J., Harkins, T., Motamayor, J.C., Shapiro, H. 2010. T. cacao Transcriptome Sequencing. Plant and Animal Genome Conference. 1.
Functional genomics analysis of horseweed (Conyza canadensis) with special reference to the evolution of non-target-site glyphosate resistance -
Yuan, J.S., Abercrombie, L., Cao, Y., Halfhill, M.D., Zhou, X., Peng, Y., Hu, J., Rao, M.R., Heck, G.R., Larosa, T.J., Sammons, R.D., Wang, X., Ranjan, P., Johnson, D.H., Wadl, P.A., Scheffler, B.E., Rinehart, T.A., Trigiano, R.N., Stewart, Jr, C.N. 2010. Functional genomics analysis of horseweed (Conyza canadensis) with special reference to the evolution of non-target-site glyphosate resistance. Weed Science. 58:109-117.
Optimized construction of microsatellite-enriched libraries -
Techen, N., Arias De Ares, R.S., Pan, Z., Khan, I., Scheffler, B.E. 2010. Optimized construction of microsatellite-enriched libraries. Molecular Ecology. 10:508-515.
Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. -
Simko, I., Pechenick, D.A., Mchale, L.K., Truco, M.J., Ochoa, O.E., Michelmore, R.W., Scheffler, B.E. 2009. Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1.. Biomed Central (BMC) Plant Biology, Year 2009, volume 9, article number 135.
Transcript Analysis of Sedentary Parastic Female Reniform Nematodes (Rotylenchulus reniformis) Identifies Candidate Parasitism Genes and Targets for RNA-Interference -
Wubben, M., Callahan, F.E., Scheffler, B.E. 2010. Transcript analysis of sedentary parastic female reniform nematodes (Rotylenchulus reniformis) identifies candidate parasitism genes and targets for RNA-interference. Proceedings Plant and Animal Genome Conference. CD-ROM.
Microsatellites Reveal Genetic Diversity in Reniform Nematode Populations -
Arias De Ares, R.S., Stetina, S.R., Tonos, J.L., Scheffler, J.A., Scheffler, B.E. 2010. Microsatellites Reveal Genetic Diversity in Reniform Nematode Populations. National Cotton Council Beltwide Cotton Conference, New Orleans, Louisiana, January 4-7, 2010
Optimized Construction of SSR-enriched Libraries -
Techen, N., Arias De Ares, R.S., Glynn, N.C., Pan, Z., Khan, I.A., Scheffler, B.E. 2010. Optimized Construction of SSR-enriched Libraries. Molecular Ecology Resources. 10(3)508-515
Development of molecular markers for marker-assisted selection in lettuce (Lactuca sativa). -
Simko, I., Pechenick, D.A., Mchale, L.K., Truco, M.J., Ochoa, O.E., Michelmore, R.W., Scheffler, B.E. 2010. Development of molecular markers for marker-assisted selection in lettuce (Lactuca sativa). Acta Horticulture Proceedings, Year 2010, volume 859, pages 401-408.
Benzo(A)pyrene induced glycine N-methyltransferase messenger rna expression in Fundulus heteroclitus embryos -
Fang, X., Dong, W., Thornton, C., Scheffler, B.E., Willet, K. 2010. Benzo(A)pyrene induced glycine N-methyltransferase messenger rna expression in Fundulus heteroclitus embryos. Marine Environmental Research. 69:274-276.
Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.) -
Buriev, Z.T., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abdukarimov, A., Scheffler, B.E., Stelly, D.M. 2010. Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics. 120:587-606.
Fingerprinting the bad guys, SSR DNA-profiling of Nutsedge -
Structural and functional properties of the cotton Aquaporin gene family -
Park, W., Scheffler, B.E., Bauer, P.J., Campbell, B.T. 2009. Structural and functional properties of the cotton Aquaporin gene family [abstract]. In: Proceedings of the American Society of Agronomy-Crop Science Society of America-Soil Science Society of America International Annual Meetings, November 1-5, 2009, Pittsburg, Pennsylvania. CDROM.
RiceCAP: Progress in identifying QTL for sheath blight resistance and milling yield -
Mcclung, A.M., Boza, E., Brooks, S.A., Correll, J., Eizenga, G.C., Fjellstrom, R.G., Groth, D.E., Jia, Y., Jodari, F., Linscombe, S.D., Liu, G., Moldenhauer, K.K., Nelson, J.C., Oard, J., Pinson, S.R., Prasad, B., Scheffler, B.E., Yeater, K.M., Wang, Y. 2009. RiceCAP: Progress in identifying QTL for sheath blight resistance and milling yield. American Society of Agronomy Abstracts.
Genetic Likage Map for Hydrangea macrophylla Using SSR and AFLP Markers -
Rinehart, T.A., Scheffler, B.E., Reed, S.M. 2009. Genetic Likage Map for Hydrangea macrophylla Using SSR and AFLP Markers. Meeting [Abstract]. pg. 75.
Ethanol Disrupts Chondrification of the Neurocranial Cartilages in Medaka Embryos without Affecting Aldehyde Dehydrogenase 1A2 (Aldh1A2) Promoter Methylation Reprint Icon -
Hu, Y., Willett, K.L., Khan, I.A., Scheffler, B.E., Dasmahapatra, A.K. 2009. Ethanol Disrupts Chondrification of the Neurocranial Cartilages in Medaka Embryos without Affecting Aldehyde Dehydrogenase 1A2 (Aldh1A2) Promoter Methylation. Comparative Biochemistry and Physiology. 150(4):495-502.
Development of SSR markers for Chionanthus retusus (Oleaceae) and effective discrimination of closely related taxa -
Arias, R.S., Techen, N., Rinehart, T.A., Olsen, R.T., Kirkbride, J.H., Scheffler, B.E. 2009. Development of SSR markers for Chionanthus retusus (Oleaceae) and effective discrimination of closely related taxa. American Society of Horticulture Science Meeting, July 24-28, 2008, St. Louis, MO. meeting Prodeedings. 44(4):1007.
Characterization of Pi-ta Blast resistance gene in an international rice core collection -
Wang, X., Fjellstrom, R.G., Jia, Y., Yan, W., Jia, M.H., Scheffler, B.E., Wu, D., Shu, Q., McClung, A.M. 2010. Characterization of Pi-ta Blast resistance gene in an international rice core collection. Plant Breeding. 129(5):491-501.
UPIC: Perl scripts to determine the number of SSR markers to run -
Arias, R.S., Ballard, L.L., Scheffler, B.E. 2009. UPIC: Perl scripts to determine the number of SSR markers to run. Molecular markers in Horticulture Symposium, July 29-31, 2009, Corvallis, Oregon State University. Meeting Proceedings.
Laser capture microdissection and expressed sequence tag analysis of uredinia formed by Phakopsora pachyrhizi, the causal agent of Asian soybean rust -
Tremblay, A., Li, S., Scheffler, B.E., Matthews, B.F. 2009. Laser capture microdissection (LCM) and expressed sequence tag analysis of uredinia formed by Phakopsora pachyrhizi, the causal agent of Asian soybean rust. Physiological and Molecular Plant Pathology. 73(6):163-174.
Microsatellites Reveal Genetic Diversity in Rotylenchulus reniformis Populations -
Arias, R.S., Stetina, S.R., Tonos, J.L., Scheffler, J.A., Scheffler, B.E. 2009. Microsatellites Reveal Genetic Diversity in Rotylenchulus reniformis Populations. Journal of Nematology. 41(2): 146-156.
Ploidy Variation and Genetic Diversity in Dichroa -
Rinehart, T.A., Scheffler, B.E., Reed, S.M. 2010. Ploidy Variation and Genetic Diversity in Dichroa. HortScience. 45:208-213.
Development of molecular markers for marker-assisted selection in lettuce (Lactuca sativa). -
Microsatellites from Conyza canadensis (horseweed) -
Wang, X.W., Good, L.L., Wadl, P.A., Johnson, D.H., Panthee, D., Scheffler, B.E., Rinehart, T.A., Stewart, N.R., Yuan, J., Stewart, N.C., Trigiano, R.N. 2009. Microsatellites from Conyza canadensis (horseweed). Molecular Ecology Resources. 9(5):1375-1379.
A Genetic Linkage Map of Louisiana Sugarcane (Saccharum spp. hybrids) using AFLP and SSR Markers -
Pan, Y.-B., Suman, A., Zhou, M., Kimbeng, C.A., Scheffler, B.E., Grisham, M.P., Tew, T.L., White, W.H., Richard Jr, E.P. 2009. A Genetic Linkage Map of Louisiana Sugarcane (Saccharum spp. hybrids) using AFLP and SSR Markers. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper 58-1. Available: http://a-c-s.confex.com/crops/2009am/webprogram/Paper52547.html
Genomic profile of maize response to Aspergillus flavus infection -
Kelley, R.Y., Williams, W.P., Mylroie, J.E., Boykin, D.L., Hawkins, L.K., Windham, G.L., Brooks, T.D., Bridges, S.M., Scheffler, B.E., Wilkinson, J.R. 2009. Genomic Profile of Maize Response to Aspergillus flavus Infection. Toxin Reviews. 28:129-141.
UPIC: Perl scripts to determine the number of SSR markers to run Reprint Icon -
Arias, R.S., Ballard, L.L., Scheffler, B.E. 2009. UPIC: How Many SSR Markers to Run. Bioinformation 3(8):352-360, http://www.bioinformation.net/003/007800032009.htm
SSR-FACILITATED IDENTIFICATION OF INTERSPECIFIC HYPOANEUPLOID HYBRIDS OF GOSSYPIUM HIRSUTUM X G. TOMENTOSUM NUTT. -
Gutierrez, O.A., Stelly, D.M., Saha, S., Jenkins, J.N., McCarty Jr., J.C., Raska, D.A., Scheffler, B.E. 2009. Integrative placement and orientation of non-redundant SSR loci in cotton linkage groups by deficiency analysis. Molecular Breeding. 23:693-707.
Worldwide distribution and origin of rice blast resistance gene Pi-ta -
Xueyan, W., Fjellstrom, R.G., Jia, Y., Yan, W., Jia, M.H., Scheffler, B.E., Dianxing, W., Qingyao, S., McClung, A.M. 2009. Worldwide distribution and origin of rice blast resistance gene Pi-ta. In: Proceedings of the Plant and Animal Genome Conference XVII, January 10-14-2009, San Diego, CA. P116.
Analysis of the RiceCAP germplasm panel for SNP diversity, population structure and seven yield-component traits of rice -
Solomon, W., Oard, J., McClung, A.M., Wright, M., Zhao, K., Reynolds, A., Bustamante, C., Kanter, D., McCouch, S., Scheffler, B.E. 2009. Analysis of the RiceCAP germplasm panel for SNP diversity, population structure and seven yield-component traits of rice. In: Proceedings of Plant and Animal Genome Conference XVII, January 10-14, 2009, San Diego, CA. P220.
Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm -
Abdurakhmonov, I.Y., Saha, S., Jenkins, J.N., Buriev, Z.T., Shermatov, S.E., Scheffler, B.E., Pepper, A.E., Yu, J., Kohel, R.J., Abdukarimov, A. 2009. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica. 136:401-417.
Detection of Illicium anisatum as Adulterant of Illicium verum -
Techen, N., Pan, Z., Scheffler, B.E., Kahn, I.A. 2009. Detection of Illicium anisatum as Adulterant of Illicium verum. Planta Medica. 75:392–395.
Transcript analysis of sedentary female reniform nematodes identifies potential targets ofr RNAi-mediated resistance -
Wubben, M., Callahan, F.E., Scheffler, B.E., Jenkins, J.N. 2009. Transcript analysis of sedentary female reniform nematodes identifies potential targets ofr RNAi-mediated resistance [abstract]. National Cotton Council Beltwide Cotton Conference. p. 179.
A Linkage Map for Flowering Dogwood (Cornus florida L.) Based on Microsatellite Markers -
Wang, X., Wadl, P.A., Rinehart, T.A., Scheffler, B.E., Windham, M.T., Spiers, J.M., Johnson, D.H., Trigiano, R.N. 2008. A linkage map for flowering dogwood (cornus florida l.) based on microsatellite markers. Euphytica. 165:165-175.
Quantitative Proteomic Analysis of Bean Plants Infected by a Virulent and Avirulent Obligate Rust Fungus -
Lee, J., Campbell, K., Scheffler, B.E., Feng, J., Naiman, D.Q., Garrett, W.M., Thibivilliers, S., Stacey, G., Tucker, M.L., Pastor Corrales, M.A., Cooper, B. 2008. Quantitative Proteomic Analysis of Bean Plants Infected by a Virulent and Avirulent Obligate Rust Fungus. Molecular and Cellular Proteomics. 8:19-31.
Identification and Differentiation Between Hoodia gordonii Masson) Sweet ex Decne., Opuntia ficus indica (L.) P. Miller and Other Related Hoodia Species by Microscopy and PCR Methods -
Joshi, V., Techen, N., Scheffler, B.E., Khan, I.A. 2009. Identification and Differentiation Between Hoodia gordonii Masson) Sweet ex Decne., Opuntia ficus indica (L.) P. Miller and Other Related Hoodia Species by Microscopy and PCR Methods. Journal of Herbs, Spices and Medicinal Plants. 15(3)253-264
Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm -
Abdurakhmonov, I.Y., Kohel, R.J., Yu, J., Pepper, A.E., Abdullaev, A.A., Kushanov, F.N., Salakhutdinov, I.B., Buriev, Z.T., Saha, S., Scheffler, B.E., Jenkins, J.N., Abdukarimov, A. 2008. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics. 92:478-487.
Applications of Microsatellites in Two Big Bracted Dogwood Species, Flowering and Kousa Dogwood -
Xinwang, W., Scheffler, B.E., Rinehart, T.A., Gann, A.M., Reed, S.M., Windham, M.T., Trigiano, R.N., Wadl, P.A. 2008. Applications of Microsatellites in Two Big Bracted Dogwood Species, Flowering and Kousa Dogwood. American Society of Horticulture Science Meeting.
Analysis of expressed sequence tags from Uromyces appendiculatus hyphae and haustoria and their comparison to sequences from other rust fungi -
Tucker, M.L., Puthoff, D.P., Neelam, A., Ehrenfried, M.L., Scheffler, B.E., Ballard, L.L., Campbell, K.B., Cooper, B. 2008. Analysis of expressed sequence tags from Uromyces appendiculatus hyphae and haustoria and their comparison to sequences from other rust fungi. Phytopathology. 98:1126-1135.
Developing a sugarcane molecular identity database for use in breeding -
Pan, Y.-B., Scheffler, B.E., Richard Jr, E.P. 2008. Developing a sugarcane molecular identity database for use in breeding [abstract]. Available: http://www.issct.org/past-workshops/pathmbiolreport08.html. Also in: Proceedings IX Plant Pathology and VI Molecular Biology Workshop. June 23-27, 2008. Cali, Colombia. p. 6.
Mining novel genes resistant to blast disease for US rice production -
Yan, W., Correll, J., Agrama, H., Scheffler, B.E., Fjellstrom, R.G., McClung, A.M. 2008. Mining novel genes resistant to blast disease for US rice production. American Society of Agronomy Abstracts. p. 551-8.
Benzo(A)pyrene Decreases Brain and Ovarian Aromatase mRNA Expression -
Dong, W., Wang, L., Thornton, C., Scheffler, B.E., Willett, K.L. 2008. Benzo(A)pyrene Decreases Brain and Ovarian Aromatase mRNA Expression. Aquatic Toxicology.
Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylo-genomic characterization, chromosome localization and linkage mapping -
An, C., Saha, S., Jenkins, J.N., Ma, D., Scheffler, B.E., Kohel, R.J., Yu, J., Stelly, D.M. 2008. Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylogenomic characterization, chromosome localization and linkage mapping. Theoretical and Applied Genetics. 161:1015-1026.
Factors contributing to milling quality differences in MY3, a 'RiceCAP' project milling population -
Jodari, F., Roughton, A.I., Fjellstrom, R.G., Scheffler, B.E., Nelson, J.C. 2008. Factors contributing to milling quality differences in MY3, a 'RiceCAP' project milling population [abstract]. In: Proceedings of the Thirty-Second Rice Technical Working Group, February 18–21, 2008, San Diego, California. p. 55.
Fractionation of Synteny in a Genomic Region Containing Tandemly Duplicated Genes Across Glycine max, Medicago truncatula and Arabidopsis thaliana -
Schlueter, J.A., Scheffler, B.E., Jackson, S., Shoemaker, R.C. 2008. Fractionation of Synteny in a Genomic Region Containing Tandemly Duplicated Genes Across Glycine max, Medicago truncatula and Arabidopsis thaliana. Journal of Heredity.
Microsatellites from Kousa dogwood (Cornus Kousa) -
Wadl, P., Wang, X., Scheffler, B.E., Rinehart, T.A., Trigiano, R. 2007. Microsatellites from Kousa dogwood (Cornus Kousa). Molecular Ecology Notes, online (doi:10.1111/j.1471-8286.2007.02062.x)
Development and Characterization of Simple Sequence Repeats for Flowering Dogwood (Cornus florida L.) -
Wang, X., Trigiano, R.N., Windham, M.T., Scheffler, B.E., Rinehart, T.A., Spiers, J.M. 2007. Development and Characterization of Simple Sequence Repeats for Flowering Dogwood (Cornus florida L.). Tree Genetics & Genomics Vol 4, no.3 pp.461-468.
BAC-DERIVED SSR CHROMOSOME LOCATIONS IN COTTON -
Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Scheffler, B.E., Stelly, D.M. 2008. BAC-derived SSR chromosome locations in cotton. Euphytica. 161:361-370.
GENE DUPLICATION AND PALEOPOLYPLOIDY IN SOYBEAN AND THE IMPLICATIONS FOR WHOLE GENOME SEQUENCING -
Schlueter, J., Lin, J., Schlueter, S., Vasylenko-Sanders, I., Deshpandem, S., Yi, J., O'Bleness, M., Roe, B., Nelson, R., Scheffler, B.E., Jackson, S., Shoemaker, R.C. 2007. Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing. Biomed Central (BMC) Genomics. 8:330.
Towards Sequencing Cotton (Gossypium) Genomes -
Chen, Z., Scheffler, B.E., Dennis, E., Triplett, B.A., Zhang, T., Chen, X., Stelly, D., Rabinowicz, P., Town, C., Arioli, T., Brubaker, C., Cantrell, R., Lacape, J., Ulloa, M., Chee, P., Gingle, A.R., Haigler, C.H., Percy, R.G., Saha, S., Wilkins, T., Wright, R.I., Van Deynze, A., Zhu, Y., Yu, S., Guo, W., Abdurakhmonov, I., Katageri, I., Ur-Rahman, M., Zafar, Y., Yu, J., Kohel, R.J., Wendel, J., Paterson, A. 2007. Towards Sequencing Cotton (Gossypium) Genomes. Plant Physiology. 145:1303-1310.
Analysis of Transcripts and Proteins Expressed in the Salivary Glands of Hessian Fly (Mayetiola destructor) Larvae -
Chen, M., Huixian, Z., Zhu, Y., Scheffler, B.E., Liu, X., Liu, X., Hulbert, S., Stuart, J. 2008. Analysis of Transcripts and Proteins Expressed in the Salivary Glands of Hessian Fly (Mayetiola destructor) Larvae. Journal of Insect Physiology.54:1-16.
Development and characterization of RiceCAP QTL mapping population for sheath blight resistance -
Mcclung, A.M., Groth, D., Oard, J.H., Utomo, H., Moldenhauer, K.K., Boza, E., Scheffler, B.E., Jia, Y., Liu, G., Correa, F., Fjellstrom, R.G. 2007. Development and characterization of RiceCAP QTL mapping population for sheath blight resistance. [abstract] American Society of Agronomy Abstracts. p. 259-4.
Development of Reniform Nematode Resistance in Upland Cotton -
Robinson, A.F., Augudelo, P., Avila, C.A., Bell, A.A., Callahan, F.E., Cook, C.G., Dighe, N.D., Gutierrez, O.A., Hayes, R.W., Jenkins, J.N., Johnson, J.T., Kantety, R., Lawrence, G.W., Lawrence, K.S., Mangineni, L., Mccarty, J.C., Menz, M.A., Meredith, W.A., Nichols, R.L., Robbins, R.T., Sacks, E., Scheffler, B., Sciumbato, G.L., Smith, C.W., Starr, J.L., Stelly, D.M., Stetina, S.R., Stewart, J.M., Thaxton, P.M., Wallace, T.P., Weaver, D.B., Wubben, M.J., Young, L.D. 2008. Development of reniform nematode resistance in Upland cotton. In: Proceedings of the World Cotton Research Conference-4, September 10-14, 2007, Lubbock, Texas. 2008 CDROM.
AFLATOXIN FORMATION AND GENE EXPRESSION IN RESPONSE TO CARBON SOURCE MEDIA SHIFT IN ASPERGILLUS PARASITICUS -
Wilkinson, J.R., Yu, J., Abbas, H.K., Scheffler, B.E., Kim, H.S., Nierman, W.C., Bhatnagar, D., Cleveland, T.E. 2007. Aflatoxin formation and gene expression in response to carbon source media shift in Aspergillus parasiticus. Journal of Food Additives & Contaminants. 24(10):1051-1060.
Microsatellites and Their Appliation in Flowering Dogwood -
Wang, X., Trigiano, R., Windham, M., Scheffler, B.E., Rinehart, T.A., Spiers, J.M. 2008. Microsatellites and Their Appliation in Flowering Dogwood. Meeting Abstract.
High-throughput genotyping of commercial sugarcane clones with microsatellite (SSR) DNA markers -
Pan, Y.-B., Scheffler, B.S., Richard, Jr., E.P. 2007. High-throughput genotyping of commercial sugarcane clones with microsatellite (SSR) DNA markers. Sugar Tech. 9:176-181.
RiceCAP: Development of molecular markers associated with long grain milling yield -
Mcclung, A.M., Boza, E., Fjellstrom, R.G., Guo, Z., Jodari, F., Linscombe, S.D., Moldenhauer, K.K., Nelson, J., Oard, J., Scheffler, B.E., Sun, X. 2007. RiceCAP: Development of molecular markers associated with long grain milling yield. Cereal Foods World 52:A5.
Transcriptome profiling, sequence characterization, and assignment to chromosomes of SNP markers for EXPANSIN genes in cotton -
An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Wilkins, T.A., Stelly, D.M. 2007. Transcriptome profiling, sequence characterization, and SNP-based chromosomal assignment of the EXPANSIN genes in cotton. Molecular Genetics and Genomics. 278:539-553.
Molecular and SNP characterization of two genome specific transcription factor genes GhMyb8 and GhMyb10 in cotton species -
Hsu, C., An, C., Saha, S., Ma, D., Jenkins, J.N., Scheffler, B.E., Stelly, D. 2008. Molecular and SNP characterization of two genome specific transcription factor genes GhMyb8 and GhMyb10 in cotton species. Euphytica. 159:259-273.
Characterization of Microsatellite Loci in the Western Tarnished Plant Bug, Lygus hesperus Knight (Hemiptera: Miridae) -
Shrestha, R.B., Parajulee, M.N., Perera, O.P., Scheffler, B.E., Densmore, L.S. 2007. Characterization of Microsatellite Loci in the Western Tarnished Plant Bug, Lygus hesperus Knight (Hemiptera: Miridae). Molecular Ecology Notes. 7:1342-1344. (doi:10.1111/j.147-8286.2007.01875.x)
Using microsatellite DNA markers to determine the genetic identity of parental clones used in the Louisiana sugarcane breeding program -
Pan, Y.-B., Scheffler, B.E., Richard Jr, E.P. 2007. Using microsatellite DNA markers to determine the genetic identity of parental clones used in the Louisiana sugarcane breeding program. Journal of the American Society of Sugar Cane Technologists. 27:71.
Chararacteristics of Thirteen Polymorphic Microsatellite Markers in the Corn Earworm, Helicovepa zea (Lepidoptera : Noctuidae) -
Perera, O.P., Blanco C.A., SchefflerB.E., and Abel C.A. 2007. Characteristics of 13 ploymorphic microsatellite makers in the corn earworm, Helicovepa zea (Lepidoptera: Noctuidae). Mol. Ecol. Notes. doi: 10.1111/j.147-8286.2007.01806.x
Protein Accumulation Changes Associated with Germination of the Uromyces appendiculatus Uredospore -
Cooper, B., Neelan, A., Campbell, K., Lee, J., Liu, G., Garrett, W.M., Scheffler, B.E., Tucker, M.L. 2007. Protein Accumulation Changes Associated with Germination of the Uromyces appendiculatus Uredospore. Molecular Plant-Microbe Interactions. 20(7):857-866.
Characterization of Eight Polymorphic Microsatellite Markers from the Tarnished Plant Bug, Lygus lineolaris (Palisot de Beauvois) -
Perera O. P., Snodgras G.L., Scheffler B.E., Gore J., and Abel C. A. 2007. characterization of eight ploymorphic microsatelliet markers in the tarnished plant bug, Lygus lineolaris (Palisot de Beauvois). Mol. Ecol. Notes. doi: 10.1111/j.1471-8286.2007.01747.x
Aspergillus flavus whole genome and EST sequence releases and construction of homologous gene search blast server -
Yu, J., Moore Flanagan, M.E., Scheffler, B.E., King Jr, E.G., Bhatnagar, D., Cleveland, T.E. 2007. Aspergillus flavus whole genome and EST sequence releases and construction of homologous gene search blast server. Germplasm Release. Web Blast Server for Gene Homology Search and Genome Sequence Releases at USDA/ARS/MSA, Stoneville, MS. (http://199.133.182.124:4443/blast/Unique.html).
The R2R3-Myb transcription fators of cotton: SNP characterization, chromosomal assignment, and phylogenetic analysis -
An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Ma, D-P., Stelly, D.M. 2007. MYB genes, a family of transcription fators: SNPS characterization, chromosomal location, and phylogenetic analysis [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1620.
Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton -
Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Abdullaev, A., Shermatov, S., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2007. Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. W199.
EVIDENCE OF CLUSTERING FOR THE MIC-3 ROOT-SPECIFIC GENE FAMILY ASSOCIATED WITH NEMATODE RESISTANCE IN GOSSYPIUM SPP. -
Buriev, Z., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abukarimov, A., Scheffler, B.E., Stelly, D.M., Wubben, M. 2006. Evidence of clustering for the mic-3 root-specific gene family associated with nematode resistance in gossypium spp [abstract]. American Society of Agronomy Abstracts. CDROM.
A Simple and Effective Procedure for Discovering Microsatellites from Small Insert Libraries -
Wang, X., Trigiano, R.N., Windham, M.T., Devries, R., Scheffler, B.E., Rinehart, T.A., Spiers, J.M. 2006. A simple and effective procedure for discovering microsatellites from small insert libraries. Molecular Ecology Notes. Vol 7. pp 558-561
Analysis of ESTs from Multiple Gossypium hirsutum Tissues and Identification of SSRs -
Taliercio, E.W., Allen, R.D., Essenberg, M., Nguyen, H., Patil, M., Payton, P.R., Phillips, A., Pierce, M., Scheffler, B.E., Turley, R.B., Wang, J., Zhang, D., Scheffler, J.A. 2006. Analysis of ESTs from Multiple Gossypium hirsutum Tissues and Identification of SSRs. Genome. 49:306-319.
THE FAD2 GENE FAMILY OF SOYBEAN:INSIGHTS INTO THE STRUCTURAL AND FUNCTIONAL DIVERGENCE OF A PALEOPOLYPLOID GENOME -
Schlueter, J.A., Sanders, I.F., Deshpande, S., Yi, J., Seigfried, M., Roe, B.A., Schlueter, S.D., Scheffler, B.E., Shoemaker, R.C. 2006. The fad2 gene family of soybean:insights into the structural and functional divergence of a paleopolyploid genome. The Plant Genome. 1:14-26.
EVALUATION OF THE CMD PANEL -
A STRATEGY FOR DEVELOPING SNP MARKERS FOR THE MIC-3 ROOT-SPECIFIC GENE FAMILY ASSOCIATED WITH NEMATODE RESISTANCE IN GOSSYPIUM SPP. -
Buriev, Z., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abdukarimov, A., Scheffler, B.E., Stelly, D.M., Wubben, M. 2006. A strategy for developing snp markers for the mic-3 root-specific gene family associated with nematode resistance in gossypium spp. [abstract]. Proceedings International Cotton Genome Initiative Conference. Available: http:\\cgi.tamu.edu\pds\icgi06-abs-final.
Genetic diversity estimates for the genus Hydrangea and development of a molecular key based on SSR -
Rinehart, T.A., Scheffler, B.E., Reed, S.M. 2006. Genetic diversity estimates for the genus Hydrangea and development of a molecular key based on SSR. Journal of the American Society for Horticultural Science. 131:787-797.
Linkage Disequilibrium Based Association Mapping of Fiber Quality Traits in Cotton Using Diverse Cotton Germplasm from Uzbekistan -
Abdurakhomonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Kushanov, F.N., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2006. Linkage disequilibrium based association mapping of fiber quality traits in cotton using diverse cotton germplasm from Uzbekistan [abstract]. In: Proceedings of International Cotton Genome Initiative Workshop, Structural Genomics Session, September 18-20, 2006, Brasilia, Brazil. Paper No. 7. Available: http://icgi.tamu.edu/pdf/icgi06_abs_final.pdf.
Analysis of Genetic Diversity in Selected Cornus Species Using SSR Markers -
Wang, X., Trigiano, R., Windham, M., Devries, R., Rinehart, T.A., Spiers, J.M., Scheffler, B.E. 2007. Analysis of Genetic Diversity in Selected Cornus Species Using SSR Markers. Southern Nursery Association Research Conference vol.51, pp. 616-617.
CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics -
Blenda, A.V., Scheffler, J.A., Scheffler, B.E., Palmer, M., Lacape, J., Yu, J., Jesudraui, C., Jung, S., Muthukumar, S., Yellambalase, P., Ficklin, S., Staton, M., Eschelman, R., Ulloa, M., Saha, S., Burr, B., Lui, S., Zhang, T., Fang, D., Pepper, A.E., Kumpatla, S.P., Jacobs, J., Tomkins, J.P., Cantrell, R.G., Main, D. 2006. CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics. Biomed Central (BMC) Genomics. 7:132.
ON THE HUNT FOR NEW MOLECULAR MARKERS: EVALUATING SOYBEAN (GLYCINE MAX) SSR'S FOR COTTON (GOSSYPIUM HIRSUTUM) -
Scheffler, J.A., Scheffler, B.E., Ray, J.D., Taliercio, E.W. 2006. On the hunt for new molecular markers: evaluating soybean (glycine max) ssr's for cotton (gossypium hirsutum). Indian Society for Cotton Improvement. Vol 31: 79-87
MEDIA SHIFT OF ASPERGILLUS PARASITICUS CULTURES FOR STUDYING THE MOLECULAR REGULATION OF AFLATOXIN -
Wilkinson, J.R., Yu, J., Abbas, H.K., Scheffler, B.E., Kim, H.S., Nierman, W.C., Bhatnagar, D., Cleveland, T.E. 2006. Media shift of Aspergillus parasiticus cultures for studying the molecular regulation of aflatoxin. In: Proceedings of the American Society for Microbiology Annual Meeting, May 21-26, 2006, Orlando, FL. Abstract #O-064, p. 433.
INFLUENCE OF TRYPTOPHAN ON AFLATOXIN BIOSYNTHESIS AND REGULATION IN ASPERGILLUS FLAVUS -
Wilkinson, J.R., Yu, J., Bland, J.M., Scheffler, B.E., Kim, H.S., Nierman, W.C., Cleveland, T.E. 2006. Influence of tryptophan on aflatoxin biosynthesis and regulation in Aspergillus flavus. In: Proceedings of the American Society for Microbiology Annual Meeting, May 21-26, 2006, Orlando, FL. Abstract #O-042, p. 429.
TRYPTOPHAN’S EFFECTS ON AFLATOXIN BIOSYNTHESIS AND ITS REGULATION IN ASPERGILLUS FLAVUS -
Wilkinson, J.R., Yu, J., Bland, J.M., Scheffler, B.E., Kim, H.S., Nierman, W.C., Cleveland, T.E. 2006. Tryptophan’s effects on aflatoxin biosynthesis and its regulation in Aspergillus flavus. In: Proceedings of the 8th European Conference on Fungal Genetics, April 6-12, 2006, Vienna, Austria. p. 68.
USING SSR MARKERS TO VERIFY CRAPEMYRTLE HYBRIDS -
Rinehart, T.A., Pounders Jr, C.T., Scheffler, B.E. Using ssr markers to verify crapemyrtle hybrids. American Society of Horticulture Science Meeting vol. 41, 1008.
ANALYSIS OF GENETIC DIVERSITY IN SELECTED CORNUS SPECIES USING SSR MARKERS -
Wang, X., Trigiano, R.N., Windham, M.T., Rinehart, T.A., Spiers, J.M., Scheffler, B.E. 2006. Analysis of genetic diversity in selected cornus species using ssr markers. American Society of Horticulture Science Meeting.
Cotton Marker Database -
SEQUENCE ANALYSIS OF SIX A-EXPANSIN GENES IN COTTON -
An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Wilkins, T.A. 2006. Chromosomal assignment of six alpha-expansin genes using SNP markers in cotton (Gossypium spp.). Beltwide Cotton Conferences. p. 737.
EFFECTS OF BENZO(A)PYRENE EXPOSURSE ON KILLFISH (FUNDULUS HETEROCLITUS) AROMATASE ACTIVITIES AND MRNA -
Patel, M.R., Scheffler, B.E., Wang, L., Willett, K.L. 2006. Effects of benzo(a)pyrene exposure on killfish (fundulus heteroclitus) aromatase activities and mrna. Aquatic Toxicology. 77(3):267-278.
IN VIVO AND IN VITRO CYP1B MRNA EXPRESSION IN CHANNEL CATFISH -
Willett, K.L., Ganesan, S., Patel, M., Metzger, C., Quiniou, S.M., Waldbieser, G.C., Scheffler, B.E. 2005. In vivo and in vitro cyp1b mrna expression in channel catfish. Marine Environmental Research.
Characterization of a higher plant herbicide-resistant phytoene desaturase and its use as a selectable marker -
Arias De Ares, R.S., Dayan, F.E., Albrecht, M., Howell, J., Scheffler, B.E. 2006. Characterization of a higher plant herbicide-resistant phytoene desaturase and its use as a selectable marker. Plant Biotechnology Journal. 4:263-273.
CHARACTERIZATION OF A HIGHER PLANT HERBICIDE-RESISTANT PHYTOENE DESATURASE AND ITS USE AS A SELECTABLE MARKER -
Arias, R.S., Dayan, F.E., Michel, A., Howell, J., Scheffler, B.E. 2006. Characterization of a higher plant herbicide-resistant phytoene desaturase and its use as a selectable marker. Plant Biotechnology Journal. 4: 263-273.
THE OPTIMIZATION OF MICROSATELLITE DISCOVERY IN FLOWERING DOGWOOD (CORNUS FLORIDA L.) -
Wang, X., Trigiano, R.N., Windham, M.T., Devries, R., Rinehart, T.A., Spiers, J.M., Scheffler, B.E. 2006. The optimization of microsatellite discovery in flowering dogwood (cornus florida l.). Annual International Plant & Animal Genome Conference.
GENETIC DIVERSITY IN FLOWERING DOGWOOD (CORNUS FLORIDA L.) USING MICROSATELLITE (SSR) MARKERS -
Wang, X., Trigiano, R.N., Windham, M.T., Devries, R., Rinehart, T.A., Spiers, J.M., Scheffler, B.E. 2006. Genetic diversity in flowering dogwood (cornus florida l.) using microsatellite (ssr) markers. Annual International Plant & Animal Genome Conference.
CULTIVAR IDENTIFICATION AND INTERSPECIFIC HYBRID VERIFICATION IN LAGERSTROEMIA USING SSR MARKERS -
Rinehart, T.A., Pounders Jr, C.T., Scheffler, B.E. 2006. Cultivar identification and interspecific hybrid verification in lagerstroemia using ssr markers. Annual International Plant & Animal Genome Conference.
Estimating Genetic Diversity within the Hydrangea Genus Using Molecular Markers -
Rinehart, T.A., Scheffler, B.E., Reed, S.M. 2005. Estimating Genetic Diversity within the Hydrangea Genus Using Molecular Markers. Southern Nursery Association Research Conference. pp. 656-659.
APPLICATION OF HIGH-THROUGHPUT DNA MARKER TECHNOLOGY IN SUGARCANE BREEDING: PHASE II - PCR AMPLIFICATION AND CAPILLARY ELECTROPHORESIS -
Pan, Y., Scheffler, B.E., Richard Jr, E.P. 2005. Application of High-Throughput DNA Marker Technology in Sugarcane Breeding: Phase II - PCR Amplification and Capillary Electrophoresis. Journal of the American Society of Sugar Cane Technologists. 25:117. Available: http://www.assct.org/journal/journal.htm
THE DOMINANT INHIBITORY CHALCONE SYNTHASE ALLELE C2-IDF (INHIBITOR DIFFUSE) FROM ZEA MAYS(L.) ACTS VIA AN ENDOGENOUS RNA SILENCING MECHANISM -
Della Vedova, C.B., Lorbiecke, R., Kirsch, H., Schulte, M.B., Scheets, K., Borchert, L.M., Scheffler, B.E., Wienand, U., Cone, K.C., Birchler, J.A. 2006. The dominant inhibitory chalcone synthase allele C2-IDF (inhibitor diffuse) from zea mays(L.) acts via an endogenous rna silencing mechanism. Genetics. 170:1989-2002.
THE USE OF POLYMERASE CHAIN REACTION (PCR) FOR THE IDENTIFICATION OF EPHEDRA DNA IN DIETARY SUPPLEMENTS -
Techen, N., Khan, I.A., Pan, Z., Scheffler, B.E. 2006. The use of polymerase chain reaction (pcr) for the identification of ephedra dna in dietary supplements. Planta Medica. 72: 241-247.
PATTERNS OF ESSENTIAL OIL RELATIONSHIPS IN PIMPINELLA (UMBELLIFERAE) BASED ON PHLYOGENETIC RELATIONSHIPS USING NUCLEAR AND CHLOROPLAST SEQUENCES -
Tabanca, N., Douglas, A.W., Bedir, E., Dayan, F.E., Kirimer, N., Baser, H.K., Aytac, Z., Khan, I.A., Scheffler, B.E. 2005. Patterns of essential oil relationships in pimpinella (umbelliferae) based on phlyogenetic relationships using nuclear and chloroplast sequences. Plant Genetic Resources. 3(2):149-169.
GENE TRANSCRIPTION PROFILES OF SACCHAROMYCES CEREVISIAE AFTER TREATMENT WITH PLANT PROTECTION FUNGICIDES THAT INHIBIT ERGOSTEROL BIOSYNTHESIS -
Kagan, I., Michel, A., Prause, A., Scheffler, B.E., Pace, P., Duke, S.O. 2005. Gene transcription profiles of saccharomyces cerevisiae after treatment with plant protection fungicides that inhibit ergosterol biosynthesis. Journal of Pesticide Biochemistry and Physiology. 82(2):133-153.
GLOBAL GENE EXPRESSION APPROACHES TO MODE-OF-ACTION STUDIES WITH NATURAL PRODUCT-BASED PESTICIDES -
Kagan, I., Michel, A., Scheffler, B.E., Prause, A., Baerson, S.R., Duke, S.O. Global gene expression approaches to mode-of-action studies with natural product-based pesticides. Rimando, A.M., Duke, S.O., editors. American Chemical Society, Washington, DC. Natural Products for Pest Management. 2006. pp. 255-264.
EVALUATION OF SEVEN AB INITIO GENE PREDICTION PROGRAMS FOR THE DISCOVERY OF MAIZE GENES -
Yao, H., Guo, L., Fu, Y., Wen, T., Borsuk, L.A., Skibbe, D.S., Cui, X., Scheffler, B.E., Cao, J., Ashlock, D.A., Schnable, P.S. 2005. Evaluation of seven ab initio gene prediction programs for the discovery of maize genes. Plant Physiology. 57(3): 445-460.
MOLECULAR EVOLUTION OF HERBICIDE RESISTANCE TO PHYTOENE DESATURASE INHIBITORS IN HYDRILLA VERTICILLATA AND ITS POTENTIAL USE TO GENERATE HEBICIDE-RESISTANT CROPS -
Arias, R.S., Netherland, M.D., Scheffler, B.E., Puri, A., Dayan, F.E. 2005. Molecular evolution of herbicide resistance to phytoene desaturase inhibitors in hydrilla verticillata and its potential use to generate hebicide-resistant crops. Pest Management Science. 61:258-268.
HERBICIDES, BIOTECHNOLOGY -
Duke, S.O., Scheffler, B.E., Boyette, C.D., Lydon, J., Oliva, A. 2005. Herbicides, biotechnology. In Kirk-Othmer Encyclopedia of Chemical Technology, Wiley-Interscience, New York. 13:346-369.
THE SOYBEAN GENOME: DUPLICATIVE, YET UNIQUE -
Shoemaker, R.C., Schlueter, J., Scheffler, B.E. 2005. The soybean genome: duplicative, yet unique. Plant and Animal Genome Abstracts. W207:Legumes.
MOLECULAR MARKERS RUN ON A TEST PANEL: A DATA SOURCE FOR THE COTTON COMMUNITY -
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: a data source for the cotton community. International Cotton Genome Initiative Workshop.
THE ROADMAP TO THE COTTON GENOME -
Scheffler, B.E. 2004. The roadmap to the cotton genome. International Cotton Genome Initiative Workshop.
ON THE HUNT FOR NEW MOLECULAR MARKERS -
MOLECULAR MARKERS RUN ON A TEST PANEL: A DATA SOURCE FOR THE COTTON COMMUNITY -
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: A data source for the cotton community [abstract]. International Cotton Genome Initiative Workshop. Paper No. 18-45.
HIGHLY POLYMORPHIC MICROSATELLITE DNA MARKERS FOR U.S. SUGARCANE GERMPLASM EVALUATION AND VARIETY FINGERPRINTING -
Pan, Y.B., Comstock, J.C., Scheffler, B.E. 2005. Highly Polymorphic Microsatellite DNA Markers for U.S. Sugarcane Germplasm Evaluation and Variety Fingerprinting [abstract]. Guide of Plant and Animal Genome XIII. p. 36.
GENETIC PROFILING OF HYPERICUM L. (ST. JOHN'S WORT) SPECIES BY NUCLEAR RIBOSOMAL I.T.S. SEQUENCE ANALYSIS -
Crockett, S.L., Douglas, A.W., Scheffler, B.E., Khan, I.A. 2004. Genetic profiling of Hypericum L. (St. John's Wort) species by nuclear ribosomal I.T.S. sequence analysis. Planta Medica. 70:929-935.
SOR1, A GENE ASSOCIATED WITH BIOHERBICIDE PRODUCTION IN SORGHUM ROOT HAIRS -
Yang, X., Scheffler, B.E., Weston, L.A. 2004. Sor1, a gene associated with bioherbicide production in sorghum root hairs. Experimental Biology. 55(406):2251-2259.
SOMATIC MUTATION-MEDIATED EVOLUTION OF HERBICIDE RESISTANCE IN THE NONINDIGENOUS INVASIVE PLANT HYDRILLA (HYDRILLA VERTICILLATA) -
Michel, A., Arias De Ares, R.S., Scheffler, B.E., Duke, S.O., Netherland, M., Dayan, F.E. 2004. Somatic mutation-mediated evolution of herbicide resistance in the nonindigenous invasive plant hydrilla (Hydrilla verticillata). Molecular Ecology. 13:3229-3237.
APPLICATION OF HIGH-THROUGHPUT DNA MARKER TECHNOLOGY IN SUGARCANE BREEDING: PHASE I - NUCLEIC ACIDS EXTRACTION -
Pan, Y., Veremis, J.C., Scheffler, B.E., Tew, T.L., Grisham, M.P., White, W.H., Richard Jr, E.P. 2004. High-throughput application of the DNA marker technology in sugarcane breeding: Phase I - DNA extraction [abstract]. Journal of the American Society of Sugar Cane Technologists. 24:117.
DNA MICROARRAY AND PROTEOMIC ANALYSIS OF ROOT HAIR INFECTION -
Stacey, G., Huang, S., Wan, J., Zou, J., Clough, S.J., Scheffler, B.E., Kim, S., Nguyen, H. 2004. DNA microarray and proteomic analysis of root hair infection. International Conference on Legume Genomics and Genetics. p. 183-184.
AUTHENTICATION OF MEDICINAL PLANTS USING MOLECULAR BIOLOGY TECHNIQUES TO COMPLIMENT CONVENTIONAL METHODS -
Techen, N., Crockett, S.L., Khan, I.A., Scheffler, B.E. Authentication of medicinal plants using molecular biology techniques to compliment conventional methods. Current Medicinal Chemistry. 2004. V. 11. P. 1391-1401.
EVALUATION OF THE TRANSCRIPTOME RESPONSE OF CHANNEL CATFISH TO ENTERIC SEPTICEMIA OF CATFISH -
Arnizaut, A., Waldbieser, G.C., Scheffler, B.E., Bengten, E., Wilson, M., Wolters, W.R., Hanson, L. 2004. Evaluation of the transcriptome response of channel catfish to enteric septicemia of catfish. 55th Annual Meeting of the Animal Disease Research Workers in Southern States/6th Annual Meeting of the Southern Conference of Researchers in Aquatic Diseases. Biloxi, MS. p. 28.
GENOMIC AND PHYLOGENIC COMPARISONS OF THE ALPHA GLOBIN AND BETA GLOBIN INTERGENIC SEQUENCES BETWEEN ZEBRA FISH (DANIO RERIO) AND SIX CLOSELY RELATED CYPRININDAE SPECIES -
Vidal, G., Scheffler, B.E., Michel, A., D'Surney, S.J. 2004. Genomic and phylogenic comparisons of the alpha globin and beta globin intergenic sequences between zebra fish (danio rerio) and six closely related cyprinindae species. DNA and Cell Biology. V. 23. P. 325-334.
MOLECULAR MARKER POSSIBILITIES - GOING BEYOND GOSSYPIUM -
Scheffler, J.A., Ray, J.D., Scheffler, B.E., Techan, N. 2004. Molecular marker possibilities - going beyond Gossypium [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1130.
NEW POSSIBILITIES FOR SOME OLD GENES: IMPROVED HOST PLANT RESISTANCE IN COTTON -
Scheffler, J.A., Dowd, M.K., Meredith Jr, W.R., Scheffler, B.E. 2004. New possibilities for some old genes: improved host plant resistance in cotton. In: Proceedings of the World Cotton Research Conference III, March 9-13, 2003, Cape Town, South Africa. p. 175-182.
DOSE-RESPONSE RELATIONSHIPS BETWEEN HERBICIDES WITH DIFFERENT MODES OF ACTION AND GROWTH OF LEMNA PAUCICOSTATA: AN IMPROVED ECOTOXICOLOGICAL METHOD -
Michel, A., Johnson, R.D., Duke, S.O., Scheffler, B.E. Dose-response relationships between herbicides with different modes of action and growth of Lemna paucicostata: an improved ecotoxicological method. Environmental Toxicology and Chemistry. 2004. V. 23(4). P. 1074-1079.
Bioengineering resistance to phytoene desaturase inhibitors in Arabidopsis thaliana -
Arias, R.S., Netherland, M.D., Michel, A., Duke, S.O., Scheffler, B.E., Dayan, F.E. 2004. Bioengineering resistance to phytoene desaturase inhibitors in Arabidopsis thaliana. Weed Science Society of America (WSSA) Meeting, February 11, 2004, Kansas City, MO. Meeting Proceedings.
MANIPULATION OF ROOT HAIR DEVELOPMENT AND SORGOLEONE PRODUCTION IN SORGHUM SEEDLINGS -
Yang, X., Owens, T.G., Scheffler, B.E., Weston, L.A. Manipulation of root hair development and Sorgoleone production in sorghum seedlings. Journal of Chemical Ecology. 2004. V. 30(1). P. 199-213.
HOW MOLECULAR BIOLOGY METHODS CAN BE USED IN THE AUTHENTICATION OF BOTANICALS -
Scheffler, B.E., Tabanca, N., Crockett, S., Douglas, A., Techen, N., Kahn, I. 2003. How molecular biology methods can be used in the authentication of botanicals. American Society for Horticultural Science.
ARS RESEARCH ON NATURAL PRODUCTS FOR PEST MANAGEMENT -
DUKE, S.O., BAERSON, S.R., DAYAN, F.E., RIMANDO, A.M., SCHEFFLER, B.E., TELLEZ, M.R., WEDGE, D.E., AKEY, D.H., ARTHUR, F.H., DE LUCCA II, A.J. ARS RESEARCH ON NATURAL PRODUCTS FOR PEST MANAGEMENT. PEST MANAGEMENT SCIENCE. 2003. V.59:708-717.
STRATEGIES FOR THE USE OF NATURAL PRODUCTS FOR WEED MANAGEMENT -
DUKE, S.O., RIMANDO, A.M., BAERSON, S.R., SCHEFFLER, B.E., OTA, E., BELZ, R.G. STRATEGIES FOR THE USE OF NATURAL PRODUCTS FOR WEED MANAGEMENT. JOURNAL OF PESTICIDE SCIENCE. 2002. V.27:298-306.
BIOACTIVATION OF THE FUNGAL PHYTOTOXIN 2,5-ANHYDRO-D GLUCITOL BY GLYCOLYTIC ENZYMES IS AN ESSENTIAL COMPONENT OF ITS MECHANISM OF ACTION -
THE INHIBITORY ACTIVITY OF NATURAL PRODUCTS ON PLANT P-HYDROXYPHENYL- PYRUVATE DIOXYGENASE -
MOLECULAR METHODS IN WEED SCIENCE -
STRATEGIES FOR USING TRANSGENES TO PRODUCE ALLELOPATHIC CROPS -
BIOTECHNOLOGY FOR CONTROL OF WEEDS -
Duke, S.O., Scheffler, B.E., Boyette, D.C., Lydon, J., Oliva, A. 2003. Biotechnology for control of weeds. In: Plimer, J., Gammon, D.W., Ragsdale, N.N., editors. Encyclopedia of Agrochemicals, Vol. 2. New York, NY: John Wiley & Sons. P. 733-744.
MOLECULAR MARKERS: A DIAGNOSTIC TOOL FOR THE ASSESSMENT OF GENETIC DIVERSITY IN PODOPHYLLUM PELTATUM -
ALLELOCHEMICALS AS HERBICIDES -
DUKE,S.O., SCHEFFLER,B.E., DAYAN,F.E., ALLELOCHEMICALS AS HERBICIDES, EUROPEAN ALLELOPATHY SYMPOSIUM, 2002. Book Chapter: "Allelopathy from molecules to ecosystems". PP. 183-195.
STRATEGIES FOR RESEARCH IN APPLIED ASPECTS OF ALLELOPATHY -
DUKE,S.O., RIMANDO,A.M., SCHEFFLER,B.E., DAYAN,F.E. STRATEGIES FOR RESEARCH IN APPLIED ASPECTS OF ALLELOPATHY. EUROPEAN ALLELOPATHY SYMPOSIUM. 2002. Book Chapter: "Allelopathy from molecules to ecosystems". PP. 139-151.
GENETIC FINGERPRINTING OF HYPERICUM SPECIES: TOWARDS CERTIFICATION OF ST. JOHN'S WORT AT THE SEED LEVEL -
ISOLATION OF TWO NEW CACTA TRANSPOSABLE ELEMENTS FROM ANTHOCYANIN GENES IN MAIZE -
MOLECULAR ANALYSIS OF IN-D; A SEMI-DOMINANT ALLELE OF THE ANTHOCYANIN REGULATORY GENE INTENSIFIER -
Last Modified: 8/26/2016
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