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James L Bono (Jim)
Research Microbiologist


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Pathogenomes and virulence profiles of representative emerging non-O157 Shiga Toxin-Producing Escherichia coli - (Peer Reviewed Journal)
Pathogenomes and virulence profiles of representative emerging big six non-O157 serogroups Shiga toxin-producing Escherichia coli - (Abstract Only)
Kalalah, A.A., Konig, S.S., Bono, J.L., Bosilevac, J.M., Eppinger, M. 2024. Pathogenomes and virulence profiles of representative emerging big six non-O157 serogroups Shiga toxin-producing Escherichia coli(abstract). American Society for Microbiology, No. 5613.
Pathogenomes of Shiga toxin positive and negative Escherichia coli O157:H7 strains TT12A and B: comprehensive phylogenomic analysis using closed genomes - (Abstract Only)
Kalalah, A.A., Koenig, S.S., Feng, P.C., Bosilevac, J.M., Bono, J.L., Eppinger, M. 2024. Pathogenomes of Shiga toxin positive and negative Escherichia coli O157:H7 strains TT12A and B: comprehensive phylogenomic analysis using closed genomes [abstract]. American Society for Microbiology. No. 5741.
Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition - (Peer Reviewed Journal)
Weinroth, M.D., Clawson, M.L., Harhay, G.P., Eppinger, M., Harhay, D.M., Smith, T.P.L., Bono, J.L. 2023. Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition. Frontiers in Microbiology. 14:1303387. https://doi.org/10.3389/fmicb.2023.1303387.
Genomic and phenotypic characterization of Shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California - (Peer Reviewed Journal)
Carter, M.Q., Quinones, B., He, X., Pham, A.C., Carychao, D.K., Cooley, M., Lo, C., Chain, P.S., Lindsey, R.L., Bono, J.L. 2023. Genomic and phenotypic characterization of Shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California. Microorganisms. 11. Article 2803. https://doi.org/10.3390/microorganisms11112803.
Whole genome sequencing of Moraxella bovis strains from North America reveals two genotypes with different genetic determinants - (Peer Reviewed Journal)
Wynn, E.L., Hille, M.M., Loy, J.D., Schuller, G., Kuhn, K.L., Dickey, A.M., Bono, J.L., Clawson, M.L. 2022. Whole genome sequencing of Moraxella bovis strains from North America reveals two genotypes with different genetic determinants. BMC Microbiology. 22(1). Article 258. https://doi.org/10.1186/s12866-022-02670-3.
Comparative genomics of Escherichia coli serotype O55:H7 using complete closed genomes - (Peer Reviewed Journal)
Weinroth, M.D., Bono, J.L. 2022. Comparative genomics of Escherichia coli serotype O55:H7 using complete closed genomes. Microorganisms. 10(8): Article 1545. https://doi.org/10.3390/microorganisms10081545.
Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche - (Peer Reviewed Journal)
Weinroth, M.D., Clawson, M.L., Arthur, T.M., Wells, J., Harhay, D.M., Strachan, N., Bono, J.L. 2022. Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche. BMC Genomics. 23. Article 275. https://doi.org/10.1186/s12864-022-08497-6.
Whole-genome sequencing analysis of Shiga toxin-producing Escherichia coli O22:H8 isolated from cattle prediction pathogenesis and colonization factors and position in STEC universe phylogeny - (Peer Reviewed Journal)
Marques Da Silva, W., Larzabal, M., Figueira Aburjaile, F., Rivieri, N., Martorelli, L., Bono, J.L., Amadio, A., Cataldi, A. 2022. Whole-genome sequencing analysis of Shiga toxin-producing Escherichia coli O22:H8 isolated from cattle prediction pathogenesis and colonization factors and position in STEC universe phylogeny. Journal of Microbiology. 60:689-704. https://doi.org/10.1007/s12275-022-1616-z.
One Health Enteric Package: Expanded and standardized metadata for enteric genomic epidemiology in the US (GenFS Metadata workgroup) - (Abstract Only)
Genomic analysis of shiga toxin-containing Escherichia coli O157:H7 isolated from Argentinean cattle - (Peer Reviewed Journal)
Amadio, A., Bono, J.L., Irazoqui, M., Larzabal, M., Marques Da Siliva, W., Eberhardt, M.F., Riviere, N.A., Gally, D., Manning, S.D., Cataldi, A. 2021. Genomic analysis of shiga toxin-containing Escherichia coli O157:H7 isolated from Argentinean cattle. PLoS ONE. 16(10). Article e0258753. https://doi.org/10.1371/journal.pone.0258753.
Genome structural variation in Escherichia coli O157:H7 - (Peer Reviewed Journal)
Fitzgerald, S., Lupolova, N., Shaaban, S., Dallman, T.J., Greig, D.Q., Allison, L., Tongue, S.C., Evans, J., Henry, M.K., McNeilly, T., Bono, J.L., Gally, D.L. 2021. Genome structural variation in Escherichia coli O157:H7. Microbial Genomics. 7(11). Article 000682. https://doi.org/10.1099/mgen.0.000682.
Characterisation of early positive mcr-1 resistance gene and plasmidome in Escherichia coli pathogenic strains associated with variable phylogroups under colistin selection - (Peer Reviewed Journal)
Macori, G., Nguyen, S.V., Naithani, A., Hurley, D., Bai, L., El Garach, F., Woehrlé, F., Miossec, C., Roques, B., O'Gaora, P., Bono, J.L., Fanning, S. 2021. Characterisation of early positive mcr-1 resistance gene and plasmidome in Escherichia coli pathogenic strains associated with variable phylogroups under colistin selection. Antibiotics. 10. Article 1041. https://doi.org/10.3390/antibiotics10091041.
Complete closed genome sequence of extremely heat resistant escherichia coli AW1.7 - ()
Locus of Heat Resistance (LHR) in meat-borne Escherichia coli: Screening and genetic characterization - (Peer Reviewed Journal)
Guragain, M., Brichta-Harhay, D.M., Bono, J.L., Bosilevac, J.M. 2021. Locus of Heat Resistance (LHR) in meat-borne Escherichia coli: Screening and genetic characterization. Applied and Environmental Microbiology. 87:e02343-20. https://doi.org/10.1128/AEM.02343-20.
Prophage-dependent recombination drives genome structural variation and phenotypic heterogeneity in Escherichia coil O157:H7 - ()
Fitzgerald, S.F., Lupolova, N., Shaaban, S., Dallman, T.J., Greig, D., Allison, L., Tongue, S.C., Evans, J., Henry, M.K., McNeilly, T.N., Bono, J.L., Gally, D.L. 2020. Prophage-dependent recombination drives genome structural variation and phenotypic heterogeneity in Escherichia coil O157:H7. bioRxiv. 407981. https://doi.org/10.1101/2020.12.02.407981.
Rapid estimation of Salmonella enterica contamination level in ground beef – application of the time-to-positivity method using a combination of molecular detection and direct plating Reprint Icon - (Peer Reviewed Journal)
Harhay, D.M., Weinroth, M.D., Bono, J.L., Harhay, G.P., Bosilevac, J.M. 2021. Rapid estimation of Salmonella enterica contamination level in ground beef – application of the time-to-positivity method using a combination of molecular detection and direct plating. Food Microbiology. 93. Article 103615. https://doi.org/10.1016/j.fm.2020.103615.
Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica - (Peer Reviewed Journal)
Clawson, M.L., Schuller, G., Dickey, A.M., Bono, J.L., Murray, R.W., Sweeney, M.T., Apley, M.D., DeDonder, K.D., Capik, S.F., Larson, R.L., Lubbers, B.V., White, B.J., Blom, J., Chitko-McKown, C.G., Brichta-Harhay, D.M., Smith, T.P.L. 2020. Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica. BMC Microbiology. 20:250. https://doi.org/10.1186/s12866-020-01932-2.
Changes in a closed feedlot Escherchia coli O157:H7 population over 22 years - (Abstract Only)
Weinroth, M., Clawson, M., Arthur, T., Wells, J., Harhay, D., Bono, J. 2020. Changes in a closed feedlot Escherchia coli O157:H7 population over 22 years. [Abstract]. International Association for Food Protection Conference, Cleveland, Ohio, August 2-5 2020. Virtual. Journal of Food Protection. 83(Supplement A):P2-198.
Determination of gastrointestinal tract colonization sites from feedlot cattle transiently shedding or super-shedding Escherichia coli O157:H7 at harvest - (Peer Reviewed Journal)
Wells, J., Berry, E.D., Kim, M., Bono, J.L., Oliver, W.T., Kalchayanand, N., Wang, R., Freetly, H.C., Means, W.J. 2020. Determination of gastrointestinal tract colonization sites from feedlot cattle transiently shedding or super-shedding Escherichia coli O157:H7 at harvest. Journal of Applied Microbiology. 129:1419-1426. https://doi.org/10.1111/jam.14684.
Pathogenomes of atypical non-Shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive phylogenomic analysis using closed genomes - (Peer Reviewed Journal)
Nyong, E.C., Zaia, S.R., Allue-Guardia, A., Rodriguez, A.L., Irion-Byrd, Z., Koenig, S.S.K., Feng, P., Bono, J.L., Eppinger, M. 2020. Pathogenomes of atypical non-Shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive phylogenomic analysis using closed genomes. Frontiers in Microbiology. 11:619. https://doi.org/10.3389/fmicb.2020.00619.
Prophage variation and rearrangements in E. coli O157 and implications for zoonotic threat - (Abstract Only)
Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers - (Peer Reviewed Journal)
Whitman, K.J., Bono, J.L., Clawson, M.L., Loy, J.D., Bosilevac, J.M., Arthur, T.M., Ondrak, J.D. 2020. Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers. BMC Veterinary Research. 16:70. https://doi.org/10.1186/s12917-020-2276-z.
Complete genome sequencing of four Arcobacter species reveals a diverse suite of mobile elements - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2020. Complete genome sequencing of four Arcobacter species reveals a diverse suite of mobile elements. Genome Biology and Evolution. 12(2):3850–3856. https://doi.org/10.1093/gbe/evaa014.
Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids - (Peer Reviewed Journal)
Fitzgerald, S.F., Beckett, A.E., Palarea-Albaladejo, J., McAteer, S., Shaaban, S., Morgan, J., Ahmad, N.I., Young, R., Mabbott, N.A., Morrison, L., Bono, J.L., Gally, D.L., McNeilly, T.N. 2019. Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids. PLoS Pathogens. 15(10):e1008003. https://doi.org/10.1371/journal.ppat.1008003.
Occurrence of Escherichia coli O157:H7 in pest flies captured in leafy greens plots grown near a beef cattle feedlot - (Peer Reviewed Journal)
Berry, E.D., Wells, J.E., Durso, L.M., Friesen, K.M., Bono, J.L., Suslow, T.V. 2019. Occurrence of Escherichia coli O157:H7 in pest flies captured in leafy greens plots grown near a beef cattle feedlot. Journal of Food Protection. 82(8):1300-1307. https://doi.org/10.4315/0362-028X.JFP-18-601.
A computational method to quantify the effects of slipped strand mispairing on bacterial tetranucleotide repeats - (Peer Reviewed Journal)
Harhay, G.P., Harhay, D.M., Bono, J.L., Capik, S.F., DeDonder, K.D., Apley, M.D., Lubbers, B.V., White, B.J., Larson, R.L., Smith, T.P.L. 2019. A computational method to quantify the effects of slipped strand mispairing on bacterial tetranucleotide repeats. Nature Scientific Reports. 9:18087. https://doi.org/10.1038/s41598-019-53866-z.
Closed genome sequence of Escherichia coli K-12 group strain C600 - (Peer Reviewed Journal)
Allue-Guardia, A., Nyong, E.C., Koenig, S.S.K., Vargas, S.M., Bono, J.L., Eppinger, M. 2019. Closed genome sequence of Escherichia coli K-12 group strain C600. Microbiology Resource Announcements. 8:e1052-18. https://doi.org/10.1128/MRA.01052-18.
Complete genome sequences of three Shiga toxin-producing Escherichia coli O111:H8 strains exhibiting an aggregation phenotype - (Peer Reviewed Journal)
Parker, C., Huynh, S., Bono, J.L., Miller, W.G., Cooley, M.B., Brandl, M. 2019. Complete genome sequences of three Shiga toxin-producing Escherichia coli O111:H8 strains exhibiting an aggregation phenotype. Microbiology Resource Announcements. 8(1):e01335-18. https://doi.org/10.1128/MRA.01335-18.
Complete genome sequences of the Arcobacter cryaerophilus strains ATCC 43158T and ATCC 49615 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequences of the Arcobacter cryaerophilus strains ATCC 43158T and ATCC 49615. Microbiology Resource Announcements. 7(20):e01463-18. https://doi.org/10.1128/MRA.01463-18.
Complete genome sequence of the Arcobacter suis type strain LMG 26152 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter suis type strain LMG 26152. Microbiology Resource Announcements. 7(17):e01307-18. https://doi.org/10.1128/MRA.01307-18.
Phylogeographic analysis reveals multiple international transmission events have driven the global emergence of Escherichia coli O157:H7 - (Peer Reviewed Journal)
Franz, E., Rotariu, O., Lopes, B.S., MacRae, M., Bono, J.L., Laing, C., Gannon, V., Söderlund, R., van Hoek, A., Friesema, I., French, N.P., George, T., Biggs, P.J., Jaros, P., Rivas, M., Chinen, I., Campos, J., Jernberg, C., Gobius, K., Mellor, G.E., Chandry, P., Perez-Reche, F., Forbes, K.J., Strachan, N. 2019. Phylogeographic analysis reveals multiple international transmission events have driven the global emergence of Escherichia coli O157:H7. Clinical Infectious Diseases. 69(3):428-437. https://doi.org/10.1093/cid/ciy919.
Complete genome sequence of the Arcobacter ellisii type strain LMG 26155 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter ellisii type strain LMG 26155. Microbiology Resource Announcements. 7(16):e01268-18. https://doi.org/10.1128/MRA.01268-18.
Complete genome sequence of the Arcobacter molluscorum type strain LMG 25693 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter molluscorum type strain LMG 25693. Microbiology Resource Announcements. 7(16):e01293-18. https://doi.org/10.1128/MRA.01293-18.
Complete genome sequence of the Arcobacter halophilus type strain CCUG 53805 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter halophilus type strain CCUG 53805. Microbiology Resource Announcements. 7(14):e01077-18. https://doi.org/10.1128/MRA.01077-18.
Complete genome sequence of the Arcobacter bivalviorum type strain LMG 26154 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter bivalviorum type strain LMG 26154. Microbiology Resource Announcements. 7(12):e01076-18. https://doi.org/10.1128/MRA.01076-18.
Closed genome sequences and antibiograms of 16 pasteurella multocida isolates from bovine respiratory disease complex cases and apparently healthy controls - (Peer Reviewed Journal)
Harhay, G.P., Harhay, D.M., Bono, J.L., Smith, T.P.L., Capik, S.F., DeDonder, K.D., Apley, M.D., Lubbers, B.V., White, B.J., Larson, R.L. 2018. Closed genome sequences and antibiograms of 16 pasteurella multocida isolates from bovine respiratory disease complex cases and apparently healthy controls. Microbiology Resource Announcements. 7(11):e00976-18. https://doi.org/10.1128/MRA.00976-18.
Complete genome sequence of the Arcobacter mytili type strain LMG 24559 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter mytili type strain LMG 24559. Microbiology Resource Announcements. 7(11):e01078-18. https://doi.org/10.1128/MRA.01078-18.
Draft genome sequences of seven strains of Shiga toxin-producing Escherichia coli O111 with variation in their sensitivity to novobiocin - (Peer Reviewed Journal)
Rotundo, L., Boccia, F., Fratamico, P.M., Xu, A., Sommers, C.H., Liu, Y., Bono, J.L., Pepe, T. 2018. Draft genome sequences of seven strains of Shiga toxin-producing Escherichia coli O111 with variation in their sensitivity to novobiocin. Microbiology Resource Announcements. 7(10). https://doi.org/10.1128/MRA.01030-18.
Closed genome and comparative phylogenetic analysis of the clinical multidrug resistant Shigella sonnei strain 866 - (Peer Reviewed Journal)
Allue-Guardia, A., Koenig, S.S.K., Quiros, P., Muniesa, M., Bono, J.L., Eppinger, M. 2018. Closed genome and comparative phylogenetic analysis of the clinical multidrug resistant Shigella sonnei strain 866. Genome Biology and Evolution. 10(9):2241-2247. https://doi.org/10.1093/gbe/evy168.
Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association - (Peer Reviewed Journal)
Nguyen, S.V., Harhay, D.M., Bono, J.L., Smith, T.P.L., Fields, P.I., Dinsmore, B.A., Santovina, M., Wang, R., Bosilevac, J.M., Harhay, G.P. 2018. Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association. Microbial Genomics. 4:1-17. https://doi.org/10.1099/mgen.0.000202.
Genome sequences of eight Shiga toxin-producing Escherichia coli strains isolated from a produce-growing region in California - (Peer Reviewed Journal)
Parker, C., Cooper, K.K., Huynh, S., Smith, T.P., Bono, J.L., Cooley, M.B. 2018. Genome sequences of eight Shiga toxin-producing Escherichia coli strains isolated from a produce-growing region in California. Genome Announcements. 7(1):1-3. https://doi.org/10.1128/MRA.00807-18.
Identification of a new Shiga toxin-producing Escherichia coli O26:H11 stx2 single nucleotide polymorphism clonal complex in the United States - (Abstract Only)
Bono, J., Strockbine, N. 2018. Identification of a new Shiga toxin-producing Escherichia coli O26:H11 stx2 single nucleotide polymorphism clonal complex in the United States. Journal of Food Protection. 81 (Supplement A): P2-229.
Genetic context of antimicrobial-resistant Escherichia coli at the livestock-wildlife interface - (Abstract Only)
Chandler, J.C., Blouin, N.A., Bono, J.L., Franklin, A.B., Goodridge, L.D., Root, J., Shriner, S., Bisha, B. 2018. Genetic context of antimicrobial-resistant Escherichia coli at the livestock-wildlife interface. Journal of Food Protection. 81 (Supplement A): P2-228.
Complete genome sequence of the hippuricase-positive Campylobacter avium type strain LMG 24591 - (Peer Reviewed Journal)
Miller, W.G., Chapman, M.H., Yee, E., Revez, J., Bono, J.L., Rossi, M. 2017. Complete genome sequence of the hippuricase-positive Campylobacter avium type strain LMG 24591. Genome Announcements. 5(43):e01221-17. https://doi.org/10.1128/genomeA.01221-17.
Closed genome sequences of seven histophilus somni isolates from beef calves with bovine respiratory disease complex Reprint Icon - (Peer Reviewed Journal)
Harhay, G.P., Harhay, D.M., Bono, J.L., Smith, T.P.L., Capik, S.F., DeDonder, K.D., Apley, M.D., Lubbers, B.V., White, B.J., Larson, R.L. 2017. Closed genome sequences of seven histophilus somni isolates from beef calves with bovine respiratory disease complex. Genome Announcements. 5(40):e01099-17. https://doi.org/10.1128/genomeA.01099-17.
The impact of the bovine faecal microbiome on Escherichia coli O157:H7 prevalence and enumeration in naturally infected cattle Reprint Icon - (Peer Reviewed Journal)
Kim, M., Kuehn, L.A., Bono, J.L., Berry, E.D., Kalchayanand, N., Freetly, H.C., Benson, A.K., Wells, J. 2017. The impact of the bovine faecal microbiome on Escherichia coli O157:H7 prevalence and enumeration in naturally infected cattle. Journal of Applied Microbiology. 123:1027-1042. https://doi.org/10.1111/jam.13545.
Comparative genomics of all three Campylobacter sputorum biovars and a novel cattle-associated C. sputorum clade - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Chapman, M.H., Bono, J.L. 2017. Comparative genomics of all three Campylobacter sputorum biovars and a novel cattle-associated C. sputorum clade. Genome Biology and Evolution. 9(6): 1513-1518.
The effects of monensin in diets fed to finishing beef steers and heifers on growth performance and fecal shedding of Escherichia coli O157:H7 Reprint Icon - (Peer Reviewed Journal)
Hales, K.E., Wells, J., Berry, E.D., Kalchayanand, N., Bono, J.L., Kim, M.S. 2017. The effects of monensin in diets fed to finishing beef steers and heifers on growth performance and fecal shedding of Escherichia coli O157:H7. Journal of Animal Science. 95(8):3738-3744. https://doi.org/10.2527/jas2017.1528.
Comparative genomic analysis identifies a Campylobacter clade deficient in selenium metabolism - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Lopes, B.S., Chapman, M.H., Huynh, S., Bono, J.L., Parker, C., Strachan, N., Forbes, K.J. 2017. Comparative genomic analysis identifies a Campylobacter clade deficient in selenium metabolism. Genome Biology and Evolution. doi: 10.1093/gbe/evx093.
Complete genome sequence of the Campylobacter cuniculorum type strain LMG 24588 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Revez, J., Bono, J.L., Rossi, M. 2017. Complete genome sequence of the Campylobacter cuniculorum type strain LMG 24588. Genome Announcements. 5:e00543-17.
Whole genome sequencing may not be adequate to determine genome relatedness for surveillance and outbreak investigation of foodborne pathogens - (Abstract Only)
Bono, J.L., Arthur, T.M., Harhay, G.P., Smith, T.P. 2017. Whole genome sequencing may not be adequate to determine genome relatedness for surveillance and outbreak investigation of foodborne pathogens. [Abstract]. 12th Annual Sequencing, Finish, and Analysis in the Future Meeting, PS-2.32. Available: http://www.lanl.gov/conferences/sequencing-finishing-analysis-future/index.php.
Complete genome sequence of the Campylobacter helveticus type strain ATCC 51209T - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2017. Complete genome sequence of the Campylobacter helveticus type strain ATCC 51209T. Genome Announcements. 5(21): e00398-17.
Complete genome sequence of the thermotolerant foodborne pathogen Salmonella enterica serovar Senftenberg ATCC 43845 and phylogenetic analysis of loci encoding thermotolerance - (Abstract Only)
Nguyen, S.V., Bono, J.L., Smith, T.P., Harhay, G.P., Harhay, D.M. 2017. Complete genome sequence of the thermotolerant foodborne pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and phylogenetic analysis of Loci encoding thermotolerance . [Abstract] International Association for Food Protection Proceedings. Session T2-09. Available at: https://iafp.confex.com/iafp/2017/webprogram/authork.html.
Closed genomes and phenotypes of seven Histophilus somni isolates from beef calves with bovine respiratory disease complex - (Abstract Only)
Harhay, G.P., Harhay, D.M., Bono, J.L., Smith, T.P., Heaton, M.P., Clawson, M.L., Chitko-McKown, C.G., Capik, S.F., DeDonder, K.D., Apley, M.D., Lubbers, B.V., White, B.J., Larson, R.L. 2017. Closed genomes and phenotypes of seven Histophilus somni isolates from beef calves with bovine respiratory disease complex [Abstract]. American Society for Microbiology Microbe Meeting, June 1-5, 2017, New Orleans, LA. Poster #Sunday-869.
Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic E. coli O157 by long-read sequencing - (Abstract Only)
Shaaban, S., Dallman, T., McAteer, S., Cowley, L., Jenkins, C., Bono, J.L., Gally, D. 2017. Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic E. coli O157 by long-read sequencing. [Abstract]. Microbiology Society Annual Conference 2017, Edinburgh, UK. No. 561.
Genome sequence of the thermotolerant foodborne pathogen Salmonella enterica serovar Senftenberg ATCC 43845 and phylogenetic analysis of Loci encoding increased protein quality control mechanisms - (Peer Reviewed Journal)
Nguyen, S.V., Harhay, G.P., Bono, J.L., Smith, T.P., Harhay, D.M. 2017. Genome sequence of the thermotolerant foodborne pathogen Salmonella enterica serovar Senftenberg ATCC 43845 and phylogenetic analysis of Loci encoding increased protein quality control mechanisms. mSystems. 2:e00190-16. https://doi.org/10.1128/mSystems.00190-16.
Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing Reprint Icon - (Peer Reviewed Journal)
Shaaban, S., Cowley, L., McAteer, S., Jenkins, C., Dallman, T., Bono, J.L., Gally, D. 2016. Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing. Microbial Genomics. doi:10.1099/mgen.0.000096.
Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes - (Peer Reviewed Journal)
Clawson, M.L., Murray, R.W., Sweeney, M.T., Apley, M.D., DeDonder, K.D., Capik, S.F., Larson, R.L., Lubbers, B.V., White, B.J., Kalbfleisch, T.S., Schuller, G., Dickey, A.M., Harhay, G.P., Heaton, M.P., Chitko-McKown, C.G., Brichta-Harhay, D.M., Bono, J.L., Smith, T.P.L. 2016. Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes. BMC Genomics. 17:982. doi: 10.1186/s12864-016-3316-8.
Complete sequence of a colistin resistance gene (mcr-1) bearing isolate of Escherichia coli from the United States - (Peer Reviewed Journal)
Meinersmann, R.J., Ladely, S.R., Bono, J.L., Plumblee Lawrence, J.R., Hall, M.C., Genzlinger, L.L., Cook, K.L. 2016. Complete sequence of a colistin resistance gene (mcr-1) bearing isolate of Escherichia coli from the United States. Genome Announcements. 4(6):1283-16.
Complete, closed genome sequences of 10 Salmonella enterica subsp. enterica serovar Typhimurium strains isolated from human and bovine sources Reprint Icon - (Peer Reviewed Journal)
Nguyen, S.V., Harhay, D.M., Bono, J.L., Smith, T.P.L., Fields, P.I., Dinsmore, B.A., Santovenia, M., Kelley, C.M., Wang, R., Bosilevac, J.M., Harhay, G.P. 2016. Complete, closed genome sequences of 10 Salmonella enterica subsp. enterica serovar Typhimurium strains isolated from human and bovine sources. Genome Announcements. 4(6):e01212-16. doi:10.1128/genomeA.01212-16.
Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two food-borne outbreaks Reprint Icon - (Peer Reviewed Journal)
Cowley, L.A., Dallman, T.J., Fitzgerald, S., Irvine, N., Rooney, P.J., McAteer, S., Day, M., Perry, N.T., Bono, J.L., Jenkins, C., Gally, D. 2016. Short-term evolution of Shiga toxin-producing Escherichia coli O157 between two food-borne outbreaks. Microbial Genomics. doi:10.1099/mgen.0.000084.
Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates Reprint Icon - (Peer Reviewed Journal)
Lupolova, N., Dallman, T.J., Matthews, L., Bono, J.L., Gally, D.L. 2016. Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates. Proceedings of the National Academy of Sciences. 113(40):11312-11317. doi:10.1073/pnas.1606567113.
Complete and closed genome sequences of 10 Salmonella enterica subsp. enterica serovar Anatum isolated from human and bovine sources Reprint Icon - (Peer Reviewed Journal)
Nguyen, S.V., Harhay, D.M., Bono, J.L., Smith, T.P.L., Fields, P.I., Dinsmore, B.A., Santovenia, M., Kelley, C.M., Wang, R., Bosilevac, J.M., Harhay, G.P. 2016. Complete and closed genome sequences of 10 Salmonella enterica subsp. enterica serovar Anatum isolated from human and bovine sources. Genome Announcements. Vol. 4(3): e00447-16. doi: 10.1128/genomeA.00447-16.
Disinfectant and antimicrobial susceptibility profiles of the big six non-O157 Shiga toxin-producing Escherichia coli strains from food animals and humans Reprint Icon - (Peer Reviewed Journal)
Beier, R.C., Franz, E., Bono, J.L., Mandrell, R.E., Fratamico, P.M., Callaway, T.R., Andrews, K., Poole, T.L., Crippen, T.L., Sheffield, C.L., Anderson, R.C., Nisbet, D.J. 2016. Disinfectant and antimicrobial susceptibility profiles of the big six non-O157 Shiga toxin-producing Escherichia coli strains from food animals and humans. Journal of Food Protection. 79(8):1355-1370.
Identification of the pan and core genomes for Mannheimia haemolytica genotypes 1 and 2 - (Abstract Only)
Clawson, M.L., Schuller, G., Dickey, A.M., Bono, J.L., Murray, R.W., Sweeney, M.T., Apley, M.D., DeDonder, K.D., Capik, S.F., Larson, R.L., Lubbers, B.V., White, B.J., Harhay, G.P., Heaton, M.P., Chitko-McKown, C.G., Harhay, D.M., Smith, T.P. 2016. Identification of the pan and core genomes for Mannheimia haemolytica genotypes 1 and 2. American Society for Microbiology 2016 Meeting, July 16-20, 2016, Boston, MA. Poster No. Friday-060.
Genome sequencing, metabolic and antibiotic resistance phenotyping of diverse nasopharyngeal bacteria isolated from cattle in an epidemiological study of bovine respiratory disease - (Abstract Only)
Harhay, G.P., Harhay, D.M., Bono, J.L., Smith, T.P., Heaton, M.P., Clawson, M.L., Chitko-McKown, C.G., Capik, S.F., DeDonder, K.D., Apley, M.D., Lubbers, B.V., White, B.J., Larson, R.L. 2016. Genome sequencing, metabolic and antibiotic resistance phenotyping of diverse nasopharyngeal bacteria isolated from cattle in an epidemiological study of bovine respiratory disease [abstract]. American Society for Microbiology 2016 Meeting, July 16-20, 2016, Boston, MA. Poster No. Friday-057.
Complete genome sequence of UV-resistant Campylobacter jejuni RM3194, including an 81.08-kilobase plasmid - (Peer Reviewed Journal)
Gunther, N.W., Reichenberger, E.R., Bono, J.L. 2016. Complete genome sequence of UV-resistant Campylobacter jejuni RM3194, including an 81.08-kilobase plasmid. Genome Announcements. 4(2):e00305-16.
Mobilome differences between Salmonella enterica serovars Anatum and Typhimurium isolated from cattle and humans and potential impact on virulence - (Abstract Only)
Nguyen, S.V., Bono, J.L., Smith, T.P.L., Kelley, C.M., Wang, R., Harhay, G.P., Harhay, D.M. 2016. Mobilome differences between Salmonella enterica serovars Anatum and Typhimurium isolated from cattle and humans and potential impact on virulence. [Abstract] In proceedings: 60th Wind River Conference on Procaryotic Biology, 2016 June 1-5. Estes Park, Colorado. p. 67.
Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with conjunctivitis versus the deep nasopharynx of asymptomatic cattle Reprint Icon - (Peer Reviewed Journal)
Dickey, A.M., Loy, J.D., Bono, J.L., Smith, T.P.L., Apley, M.D., Lubbers, B.V., DeDonder, K.D., Capik, S.F., Larson, R.L., White, B.J., Blom, J., Chitko-McKown, C.G., Clawson, M.L. 2016. Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with conjunctivitis versus the deep nasopharynx of asymptomatic cattle. Veterinary Research. 47:31.
Complete closed genome sequences of Salmonella enterica subsp. enterica serotypes Anatum, Montevideo, Typhimurium and Newport, isolated from beef, cattle, and humans Reprint Icon - (Peer Reviewed Journal)
Harhay, D.M., Bono, J.L., Smith, T.P., Fields, P.I., Dinsmore, B.A., Santovenia, M., Kelley, C.M., Wang, R., Harhay, G.P. 2016. Complete closed genome sequences of Salmonella enterica subsp. enterica serotypes Anatum, Montevideo, Typhimurium and Newport, isolated from beef, cattle, and humans. Genome Announcements. 4(1):e01683-15. doi:10.1128/genomeA.01683-15.
Complete genome sequence of Campylobacter jejuni RM1285 a rod-shaped morphological variant - (Peer Reviewed Journal)
Gunther, N.W., Bono, J.L., Needleman, D.S. 2015. Complete genome sequence of Campylobacter jejuni RM1285 a rod-shaped morphological variant. Genome Announcements. doi: 10.1128/genomeA.01361-15.
Complete genome sequence of the Campylobacter ureolyticus clinical isolate RIGS 9880 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., On, S., Bono, J.L., Andersen, L.P. 2015. Complete genome sequence of the Campylobacter ureolyticus clinical isolate RIGS 9880. Genome Announcements. 3(6):e01291-15.
Comparison of O-antigen gene cluster from E. coli O157 from human and non-human strains - (Abstract Only)
Silva, N., Castillo, C., Bono, J.L. 2015. Comparison of O-antigen gene cluster from E. coli O157 from human and non-human strains. [abstract] Biomicroworld Proceedings. Session:7, code 609. Available: http://www.formatex.info/biomicroworld2015/acceptedabstracts.php
Genome sequence of a urease-positive Campylobacter lari strain - (Peer Reviewed Journal)
Meinersmann, R.J., Bono, J.L., Lindsey, R., Genzlinger, L.L., Loparev, V., Oakley, B. 2015. Genome sequence of a urease-positive Campylobacter lari strain. Genome Announcements. 3(5).pii:e01191-15. doi: 10.1128/genomeA.01191-15.
Dissemination of Escherichia coli O157:H7 from a cattle feedlot: effect of proximity on contamination of leafy greens, bioaerosols, and pest flies - (Abstract Only)
Berry, E.D., Wells, J., Durso, L.M., Bono, J.L., Friesen, K.M., Suslow, T.V., Millner, P.D. 2015. Dissemination of Escherichia coli O157:H7 from a cattle feedlot: effect of proximity on contamination of leafy greens, bioaerosols, and pest flies.[abstract] ASA-CSSA-SSSA Annual Meeting Abstracts. 195-6. Available: https://scisoc.confex.com/crops/2015am/webprogram/Paper91330.html
Canonical single nucleotide polymorphisms (SNPs) for high-resolution subtyping of Shiga-toxin producing Escherichia coli (STEC) O157:H7 Reprint Icon - (Peer Reviewed Journal)
Griffing, S.M., Maccannell, D.R., Schmidtke, A.J., Freeman, M.M., Hyytia-Trees, E., Gerner-Smidt, P., Ribot, E.M., Bono, J.L. 2015. Canonical single nucleotide polymorphisms (SNPs) for high-resolution subtyping of Shiga-toxin producing Escherichia coli (STEC) O157:H7. PLoS One. 10(7):e0131967. DOI:10.137/journal.pone.0131967.
Sequence of colonization determines the composition of mixed biofilms by Escherichia coli O157:H7 and O111:H8 strains Reprint Icon - (Peer Reviewed Journal)
Wang, R., Kalchayanand, N., Bono, J.L. 2015. Sequence of colonization determines the composition of mixed biofilms by Escherichia coli O157:H7 and O111:H8 strains. Journal of Food Protection. 78(8):1554-1559. DOI: 10.4315/0362-028X.JFP-15-009.
Comparative analysis of twenty-four complete aenome aequences of Salmonella enterica Serotypes Anatum, Montevideo, Typhimurium and Newport isolated from ground beef or asymptomatic cattle on farm or at harvest - (Abstract Only)
Harhay, D.M., Bono, J.L., Smith, T.P., Kalbfleisch, T., Kelley, C., Wang, R., Harhay, G.P. 2015. Comparative analysis of twenty-four complete aenome aequences of Salmonella enterica Serotypes Anatum, Montevideo, Typhimurium and Newport isolated from ground beef or asymptomatic cattle on farm or at harvest [abstract]. American Society for Microbiology 115th General Meeting. Poster No. 397, Session 029.
Complete closed genome sequences of a Mannheimia haemolytica serotype A1 leukotoxin deletion mutant and its wild type parent strain - (Peer Reviewed Journal)
Heaton, M.P., Harhay, G.P., Smith, T.P.L., Bono, J.L., Chitko-McKown, C.G. 2015. Complete closed genome sequences of a Mannheimia haemolytica serotype A1 leukotoxin deletion mutant and its wild-type parent strain. Genome Announcements. 3(3):e00417-15. DOI: 10.1128/genomeA.00417-15.
Identification of a mannheimia haemolytica genetic subtype that causes bovine respiratory disease - (Abstract Only)
Clawson, M.L., Murray, R.W., Sweeney, M.T., Apley, M.D., DeDonder, K.D., Capik, S., Larson, R., Lubbers, B.V., Kalbfleisch, T.S., Schuller, G., Harhay, G.P., Heaton, M.P., Chitko-McKown, C.G., Workman, A.M., Harhay, D.M., Bono, J.L., Smith, T.P.L. [abstract]. 2015. Identification of a mannheimia haemolytica genetic subtype that causes bovine respiratory disease. American Society for Microbiology 2015, 115th General Meeting, May 30-June 2, 2015, New Orleans, LA. Poster #1410.
Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-Types of Shiga toxin-producing Escherichia coli O104 - (Peer Reviewed Journal)
Yan, X., Fratamico, P.M., Bono, J.L., Baranzoni, G., Chen, C. 2015. Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-Types of Shiga toxin-producing Escherichia coli O104. BMC Microbiology. DOI: 10.1186/s12866-015-0413-9.
The effect of bovine fecal microbiome on Escherichia coli O157:H7 prevalence - (Abstract Only)
Kim, M., Kuehn, L.A., Bono, J.L., Berry, E.D., Kalchayanand, N., Freetly, H.C., Benson, A.K., Wells, J. 2015. The effect of bovine fecal microbiome on Escherichia coli O157:H7 prevalence [abstract]. 2015 Congress on Gastrointestinal Function, 2015 April 13-15, Chicago, IL. p. 34.
Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains Reprint Icon - (Peer Reviewed Journal)
Norman, K.N., Clawson, M.L., Strockbine, N.N., Mandrell, R.E., Johnson, R., Ziebell, K., Zhao, S., Fratamico, P.M., Stones, R., Allard, M., Bono, J.L. 2015. Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains. Frontiers in Cellular and Infection Microbiology. 5(21). DOI: 10.3389/fcimb.2015.00021.
Genomic comparison of Salmonella enterica serotypes commonly associated with cattle and beef – Analysis of variation in virulence potential - (Abstract Only)
Harhay, D.M., Bono, J.L., Wang, R., Smith, T.P., Harhay, G.P., Kalbfleisch, T., Wheeler, T.L. 2015. Genomic comparison of Salmonella enterica serotypes commonly associated with cattle and beef – Analysis of variation in virulence potential. [Abstract]. Beef Industry Safety Summit. http://www.bifsco.org/2015researchsessionabstracts.aspx.
Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission Reprint Icon - (Peer Reviewed Journal)
Berry, E.D., Wells, J., Bono, J.L., Woodbury, B.L., Kalchayanand, N., Norman, K.N., Suslow, T.V., Lopez-Velasco, G., Millner, P.D. 2015. Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission. Applied and Environmental Microbiology. 81(3):1101-1110.
Complete genome sequence of the larval shellfish pathogen Vibrio Tubiashii type strain ATCC 19109 - (Peer Reviewed Journal)
Richards, G.P., Needleman, D.S., Watson, M.A., Bono, J.L. 2014. Complete genome sequence of the larval shellfish pathogen Vibrio Tubiashii type strain ATCC 19109. Genome Announcements. 2(6); e01252-14. DOI: 10.1128/genomeA01252-14.
Comparative genomics of the Campylobacter lari group - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Chapman, M.H., Smith, T.P., Bono, J.L., Huynh, S., Parker, C., Vandamme, P., Luong, K., Korlach, J. 2014. Comparative genomics of the Campylobacter lari group. Genome Biology and Evolution. doi: 10.1093/gbe/evu249.
Complete genome sequence for the shellfish pathogen Vibrio coralliilyticus RE98 isolated from a shellfish hatchery - (Peer Reviewed Journal)
Richards, G.P., Bono, J.L., Watson, M.A., Needleman, D.S. 2014. Complete genome sequence for the shellfish pathogen Vibrio coralliilyticus RE98 isolated from a shellfish hatchery. Genome Announcements. DOI:10.1128/genomeA.01253-14.
Evaluation of real time PCR assays for the detection and enumeration of enterohemorrhagic Escherichia coli directly from cattle feces Reprint Icon - (Peer Reviewed Journal)
Luedtke, B.E., Bono, J.L., Bosilevac, J.M. 2014. Evaluation of real time PCR assays for the detection and enumeration of enterohemorrhagic Escherichia coli directly from cattle feces. Journal of Microbiological Methods. 105:72-79.
Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems - ()
Franz, E., Delaquis, P., Stefano, M., Beutin, L., Gobius, K., Rasko, D., Bono, J.L., French, N., Osek, J., Lindstedt, B., Muniesa, M., Manning, S., LeJeune, J., Callaway, T.R., Beatson, S., Eppinger, M., Dallman, T., Forbes, K., Aarts, H., Pearl, D., Strachan, N.J. 2014. Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems. International Journal of Food Microbiology. 187:57-72.
Fecal microbiome in the bovine animal - (Proceedings)
Wells, J., Kim, M.S., Kuehn, L.A., Bono, J.L. 2014. Fecal microbiome in the bovine animal. In: Proceedings of the Americian Meat Science Association. Reciprocal Meat Conference, 6/15-6/18/2014, Madison Wisconsin. http://www.meatscience.org/.
Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for bioaerosol and pest fly transmission - (Abstract Only)
Berry, E.D., Wells, J., Durso, L.M., Bono, J.L., Friesen, K.M., Woodbury, B.L., Kalchayanand, N., Norman, K.N., Suslow, T.V., Lopez-Velasco, G., Millner, P.D. 2014. Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for bioaerosol and pest fly transmission. [Abstract]. Western Food Safety Summit, May 8-9, 2014, Salinas, CA. poster session.
Complete genome sequence and comparison of two Shiga toxin-producing Escherichia coli O104 isolates - (Abstract Only)
Yan, X., Fratamico, P.M., Bono, J.L., Baranzoni, G., Tebbs, R., O'Connell, C. 2014. Complete genome sequence and comparison of two Shiga toxin-producing Escherichia coli O104 isolates. Meeting Abstract. MA.
Complete closed genome sequences of four Mannheimia varigena isolates from cattle with shipping fever - (Peer Reviewed Journal)
Harhay, G.P., Murray, R.W., Lubbers, B., Griffin, D., Koren, S., Phillippy, A.M., Harhay, D.M., Bono, J.L., Clawson, M.L., Heaton, M.P., Chitko-McKown, C.G., Smith, T.P. 2014. Complete closed genome sequences of four Mannheimia varigena isolates from cattle with shipping fever. Genome Announcements. 2(1):e00088-14.
Complete closed genome sequences of three Bibersteinia trehalosi nasopharyngeal isolates from cattle with shipping fever - (Peer Reviewed Journal)
Harhay, G.P., McVey, D.S., Koren, S., Phillippy, A.M., Bono, J.L., Harhay, D.M., Clawson, M.L., Heaton, M.P., Chitko-McKown, C.G., Korlach, J., Smith, T.P. 2014. Complete closed genome sequences of three Bibersteinia trehalosi nasopharyngeal isolates from cattle with shipping fever. Genome Announcements. 2(1):e00084-14.
The first closed genome sequence of Campylobacter fetus subsp. venerealis biovar intermedius - (Peer Reviewed Journal)
Van Der Graff, L., Miller, W.G., Yee, E., Bono, J.L., Rijnsburger, M., Campero, C., Wagenaar, J.A., Duim, B. 2014. The first closed genome sequence of Campylobacter fetus subsp. venerealis biovar intermedius. Genome Announcements. 2(1):e01246-13.
Escherichia coli O157:H7, diet, and fecal microbiome in beef cattle - (Proceedings)
Wells, J., Kim, M.S., Bono, J.L., Kuehn, L.A., Benson, A.K. 2014. Escherichia coli O157:H7, diet, and fecal microbiome in beef cattle. In: Proceedings of American Society of Animal Science, Meat Science and Muscle Biology Symposium. Journal of Animal Science. 92:1345-1355.
Investigation of bacterial diversity in the feces of cattle fed different diets Reprint Icon - (Peer Reviewed Journal)
Kim, M.S., Kim, J., Kuehn, L.A., Bono, J.L., Berry, E.D., Kalchayanand, N., Freetly, H.C., Benson, A.K., Wells, J. 2014. Investigation of bacterial diversity in the feces of cattle fed different diets. Journal of Animal Science. 92:683-694.
Characterization of escherichia coli O157:H7 strains from contaminated raw beef trim during “high event periods” - (Peer Reviewed Journal)
Arthur, T.M., Bono, J.L., Kalchayanand, N. 2014. Characterization of escherichia coli O157:H7 strains from contaminated raw beef trim during “high event periods”. Applied and Environmental Microbiology. 80(2):506-514.
Lineage and genogroup-defining single nucleotide polymorphisms of Escherichia coli 0157:H7 Reprint Icon - (Peer Reviewed Journal)
Jung, W.K., Bono, J.L., Clawson, M.L., Leopold, S.R., Shringi, S., Besser, T.E. 2013. Lineage and genogroup-defining single nucleotide polymorphisms of Escherichia coli 0157:H7. Applied and Environmental Microbiology. 79(22):7036-7041.
Reducing assembly complexity of microbial genomes with single-molecule sequencing - (Peer Reviewed Journal)
Koren, S., Harhay, G.P., Smith, T.P.L., Bono, J.L., Harhay, D.M., McVey, D.S., Radune, D., Bergman, N.H., Phillippy, A.M. 2013. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biology. 14:R101. DOI: 10.1186/GB-2013-14-9-R101.
Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages - (Peer Reviewed Journal)
Meinersmann, R.J., Lindsey, R., Bono, J.L., Smith, T.P., Oakley, B. 2013. Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages. Applied and Environmental Microbiology. 79(16):4806-4814.
Diet, fecal microbiome and Escherichia coli O157:H7 shedding in beef Cattle - (Abstract Only)
Wells, J., Kim, M.S., Bono, J.L., Kuehn, L.A., Benson, A.K. 2013. Diet, fecal microbiome and Escherichia coli O157:H7 shedding in beef cattle.[abstract] Journal of Animal Science Supplement. 96(E-Supplement 2):631. Abstract 577.
Investigation of microbial diversity in the feces of cattle fed different diets - (Abstract Only)
Kim, M.S., Kim, J., Kuehn, L.A., Bono, J.L., Berry, E.D., Kalchayanand, N., Freetly, H.C., Benson, A.K., Wells, J. 2013. Investigation of microbial diversity in the feces of cattle fed different diets.[abstract] Journal of Animal Science Supplement. 91 (E-Supplement 2): 235.
Characterization of Escherichia coli 0157:H7 strains isolated from supershedding cattle Reprint Icon - (Peer Reviewed Journal)
Arthur, T.M., Ahmed, R., Chase-Topping, M., Kalchayanand, N., Schmidt, J.W., Bono, J.L. 2013. Characterization of Escherichia coli 0157:H7 strains isolated from supershedding cattle. Applied and Environmental Microbiology. 79(14):4294-4303.
Effect of proximity to a cattle feedlot on the occurrence of Escherichia coli 0157:H7-positive pest flies in a leafy green crop - (Abstract Only)
Berry, E.D., Wells, J., Durso, L.M., Bono, J.L., Friesen, K.M., Woodbury, B.L., Suslow, T.V., Lopez-Velasco, G., Millner, P.D. 2013. Effect of proximity to a cattle feedlot on the occurrence of Escherichia coli 0157:H7-positive pest flies in a leafy green crop. International Association for Food Protection Proceedings. [abstract]P3-132 Page No 65.
Characterization of E. coli O157:H7 strains isolated from super-shedding cattle - (Abstract Only)
Arthur, T.M., Ahmed, R., Chase-Topping, M., Kalchayanand, N., Schmidt, J.W., Bono, J.L. 2013. Characterization of E. coli O157:H7 strains isolated from super-shedding cattle. American Society for Microbiology General Meeting. Poster No. 1707, p 171.
Phylogenetic classification of Escherichia coli O26 strains from human, animals, and environmental origins using nucleotide polymorphisms - (Abstract Only)
Norman, K.N., Clawson, M.L., Strockbine, N.A., Mandrell, R.E., Johnson, R., Ziebell, K., Zhao, S., Fratamico, P.M., Stones, R., Allard, M., Bono, J.L. 2013. Phylogenetic classification of Escherichia coli O26 strains from human, animals, and environmental origins using nucleotide polymorphisms. American Society for Microbiology General Meeting. Poster No. 484 p. 40.
Salmonella virulence, genomics and interactions with the immune system - (Proceedings)
Harhay, D.M., Smith, T.P., Harhay, G.P., Bono, J.L., Bosilevac, J.M. 2013. Salmonella virulence, genomics and interactions with the immune system. Meeting Abstract. The Beef Industry Safety Summit, March 13-15, 2013, Dallas Texas, FLASHDRIVE.
Disinfectant and antibiotic susceptibility profiles of Escherichia coli O157:H7 strains from cattle carcasses, feces, and hides and ground beef from the United States - (Peer Reviewed Journal)
Beier, R.C., Poole, T.L., Brichta-Harhay, D.M., Anderson, R.C., Bischoff, K.M., Hernandez, C.A., Bono, J.L., Arthur, T.M., Nagaraja, T.G., Crippen, T.L., Sheffield, C.L., Nisbet, D.J. 2013. Disinfectant and antibiotic susceptibility profiles of Escherichia coli O157:H7 strains from cattle carcasses, feces, and hides and ground beef from the United States. Journal of Food Protection. 76:6-17.
Dual-serotype biofilm formation by Shiga toxin-producing Escherichia coli 0157:H7 and 026:H11 strains - (Peer Reviewed Journal)
SWang, R., Kalchayanand, N., Schmidt, J.W., Bosilevac, J.M., Bono, J.L. 2012. Dual-serotype biofilm formation by Shiga toxin-producing Escherichia coli 0157:H7 and 026:H11 strains. Applied and Environmental Microbiology. 78(17):6341-6344.
Comparison of bacterial communities in faeces of beef cattle fed diets containing corn and wet distillers grain with solubles - (Peer Reviewed Journal)
Durso, L.M., Wells, J., Harhay, G.P., Rice, W.C., Kuehn, L.A., Bono, J.L., Shackelford, S.D., Wheeler, T.L., Smith, T.P. 2012. Comparison of bacterial communities in faeces of beef cattle fed diets containing corn and wet distillers grain with solubles. Letters in Applied Microbiology. 55(2):109-14. DOI: 10.1111/J.1472-765X.2012.03265.X.
Association of nucleotide polymorphisms within the O-antigen gene cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with serogroups and genetic subtypes - (Peer Reviewed Journal)
Norman, K.N., Strockbine, N.A., Bono, J.L. 2012. Association of nucleotide polymorphisms within the O-antigen gene cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with serogroups and genetic subtypes. Applied and Environmental Microbiology. 78(18):6689-6703.
Biofilm formation by Shiga toxin–producing Escherichia coli O157:H7 and non-O157 strains and their tolerance to sanitizers commonly used in the food processing environment - (Peer Reviewed Journal)
Wang, R., Bono, J.L., Kalchayanand, N., Shackelford, S.D., Harhay, D.M. 2012. Biofilm formation by Shiga toxin–producing Escherichia coli O157:H7 and non-O157 strains and their tolerance to sanitizers commonly used in the food processing environment. Journal of Food Protection. 75(8):1418-1428.
Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans - (Peer Reviewed Journal)
Bono, J.L., Smith, T.P., Keen, J.E., Harhay, G.P., McDaneld, T.G., Mandrell, R.E., Jung, W., Besser, T.E., Gerner-Smidt, P., Bielaszewska, M., Karch, H., Clawson, M.L. 2012. Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans. Molecular Biology and Evolution. 29(8):2047-2062. doi: 10.1093/molbev/mss072.
Biofilm formation by foodborne pathogens and their resistance to sanitization - (Abstract Only)
Wang, R., Bono, J.L., Kalchayanand, N., Shackelford, S.D., Harhay, D.M. 2012. Biofilm formation by foodborne pathogens and their resistance to sanitization. [Abstract]. Americian Society for Microbiology, 112th General Meeting. Poster No 2154, session 170.
Application of combined SMRT and long-read pyrosequencing to produce reference genome sequences of bacteria associated with respiratory disease outbreaks in beef cattle - (Abstract Only)
Harhay, G.P., Mcvey, D.S., Kitzmiller, A., Clamp, M., Osborne, B., Dwan, C., Zhang, J., Sisneros, N., Wang, S., Peluso, P., Bono, J.L., Chitko Mckown, C.G., Clawson, M.L., Heaton, M.P., Harhay, D.M., Smith, T.P.L. [abstract]. 2012. Application of combined SMRT and long-read pyrosequencing to produce reference genome sequences of bacteria associated with respiratory disease outbreaks in beef cattle. Advances in Genome Biology and Technology, February 15-18, 2012, Marco Island, Florida. Poster No. 129.
Evolution of Shiga toxin-producing Escherichia coli O157: eight major lineages of human and cattle origin strain signature genotypes - (Abstract Only)
Clawson, M.L., Bono, J.L. 2011. Evolution of Shiga toxin-producing Escherichia coli O157: eight major lineages of human and cattle origin strain signature genotypes [abstract]. Proceedings of the BIT's 1st Annual World Congress of Microbes - 2011, July 30 - August 1, 2011, Beijing, China. p. 195.
Evaluation of pyrosequencing for assembly of plasmids carrying IS elements - (Abstract Only)
Chen, C., Lindsey, R.L., Strobaugh Jr, T.P., Frye, J.G., Bono, J.L., Smith, T.P., Meinersmann, R.J. 2011. Evaluation of pyrosequencing for assembly of plasmids carrying IS elements [abstract]. 111th ASM General Meeting.
Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach - (Peer Reviewed Journal)
Durso, L.M., Harhay, G.P., Bono, J.L., Smith, T.P. 2011. Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach. Journal of Microbiological Methods. 84: 278-282.
Bacterial community analysis of beef cattle feedlots reveals that pen surface is distinct from feces - (Peer Reviewed Journal)
Durso, L.M., Harhay, G.P., Smith, T.P., Bono, J.L., Desantis, T.Z., Clawson, M.L. 2011. Bacterial community analysis of beef cattle feedlots reveals that pen surface is distinct from feces. Foodborne Pathogens and Disease. 8(5):647-649. Available: DOI: 10.1089/fpd.2010.0774.
Distribution of Shiga-Toxigenic Escherichia coli O157 in the Gastrointestinal Tract of Naturally O157-Shedding Cattle at Necropsy - (Peer Reviewed Journal)
Keen, J.E., Laegreid, W.W., Chitko Mckown, C.G., Durso, L.M., Bono, J.L. 2010. Distribution of Shiga-Toxigenic Escherichia coli O157 in the Gastrointestinal Tract of Naturally O157-Shedding Cattle at Necropsy. Applied and Environmental Microbiology. 76(15):5278-5281.
Molecular analysis of plasmid encoded multi-drug resistance (MDR) in Salmonella enterica animal isolates by PFGE, replicon typing, and DNA microarray screening followed by high-throughput DNA sequencing - (Abstract Only)
Lindsey, R.L., Frye, J.G., Bono, J.L., Smith, T.P., Harhay, D.M., Cray, P.J., Meinersmann, R.J. 2010. Molecular analysis of plasmid encoded multi-drug resistance (MDR) in Salmonella enterica animal isolates by PFGE, replicon typing, and DNA microarray screening followed by high-throughput DNA sequencing. American Society for Microbiology. June 8-11, 2010. Toronto, Canada. B16. p41-42.
Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle - (Peer Reviewed Journal)
Durso, L.M., Harhay, G.P., Smith, T.P.L., Bono, J.L., Desantis, T.Z., Harhay, D.M., Andersen, G.L., Keen, J.E., Laegreid, W.W., Clawson, M.L. 2010. Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle. Applied and Environmental Microbiology. 76(14):4858-4862.
Utilization of evolutionary model, bioinformatics and heuristics for development of a multiplex Escherichia coli O157:H7 PCR assay - (Abstract Only)
Burns, F.R., Bono, J.L. 2010. Utilization of evolutionary model, bioinformatics and heuristics for development of a multiplex Escherichia coli O157:H7 PCR assay [abstract]. International Association for Food Protection. 2010:27.
Comparison of cattle fecal communities from animals fed diets containing corn and distiller's grains - (Abstract Only)
Durso, L.M., Harhay, G.P., Wells, J., Bono, J.L., Riethoven, J.M., Shackelford, S.D., Wheeler, T.L., Smith, T.P. 2010. Comparison of cattle fecal communities from animals fed diets containing corn and distiller's grains. PS.25.018, Abstract #393A. Abstract for Microbial Ecology International Symposium, Seattle, WA, Aug. 22-27, 2010. Abstract Book, Pg. 128
Outbreak Investigation: STEC O157 - (Peer Reviewed Journal)
Durso, L., Maguire, H., Cronquist, A., Bono, J.L. 2010. Outbreak Investigation: STEC O157. Medical Laboratory Observer [serial online]. Available: www.mlo-online.com.
Diverse Genetic Markers Concordantly Identify Bovine Origin Escherichia coli O157 Genotypes Underrepresented in Human Disease - (Peer Reviewed Journal)
Whitworth, J., Zhang, Y., Bono, J., Pleydell, E., French, N., Besser, T. 2010. Diverse Genetic Markers Concordantly Identify Bovine Origin Escherichia coli O157 Genotypes Underrepresented in Human Disease. Applied and Environmental Microbiology. 76(1):361-365.
Phylogenetic Classification of Escherichia coli O157:H7 Strains of Human and Bovine Origin Using a Novel Set of Nucleotide Polymorphisms - (Peer Reviewed Journal)
Clawson, M.L., Keen, J.E., Smith, T.P., Durso, L.M., Mcdaneld, T.G., Mandrell, R.E., Davis, M.A., Bono, J.L. 2009. Phylogenetic Classification of Escherichia coli O157:H7 Strains of Human and Bovine Origin Using a Novel Set of Nucleotide Polymorphisms. Genome Biology [serial online]. 10:R56. Available: http://genomebiology.com/2009/10/5/R56.
Genotyping Escherichia coli O157:H7 for Its Ability to Cause Disease in Humans - (Peer Reviewed Journal)
Bono, J.L. 2009. Genotyping Escherichia coli O157:H7 for Its Ability to Cause Disease in Humans. Current Protocols in Microbiology. 14:5A.3.1-5A.3.10.
Phylogenetic Classification of Escherichia coli O157:H7 Isolates of Human and Bovine Origin Using a Novel Set of Nucleotide Polymorphisms - (Abstract Only)
Clawson, M.L., Keen, J.E., Smith, T.P., Durso, L.M., McDaneld, T.G., Mandrell, R.E., Davis, M.A., Bono, J.L. 2009. Phylogenetic Classification of Escherichia coli O157:H7 Isolates of Human and Bovine Origin Using a Novel Set of Nucleotide Polymorphisms [abstract]. American Society for Microbiology. Abstract No. Z-006. p. 612. 2009 CDROM.
Bacterial Communities Associated with Shiga-Toxigenic E. coli O157:H7 (STEC O157) in Beef Cattle Feedlot Environments - (Abstract Only)
Durso, L.M., Harhay, G.P., Bono, J.L., Smith, T.P., Laegreid, W.W., Keen, J.E., Clawson, M.L. 2009. Bacterial Communities Associated with Shiga-Toxigenic E. coli O157:H7 (STEC O157) in Beef Cattle Feedlot Environments [abstract]. Microbial Ecology 57(3):569.
Escherichia coli O157:H7 and Salmonella in Small Processing Plants and the Effect of Feeding Wet Distillers Grains with Solubles on E. coli O157:H7 - (Abstract Only)
Bosilevac, J.M., Wells, J., Arthur, T.M., Kalchayanand, N., Shackelford, S.D., Berry, E.D., Bono, J.L., Harhay, D.M., Wheeler, T.L., Koohmaraie, M. 2009. Escherichia coli O157:H7 and Salmonella in Small Processing Plants and the Effect of Feeding Wet Distillers Grains with Solubles on E. coli O157:H7 [abstract]. NCBA Beef Industry Safety Summit, San Diego, CA, March 4-6, 2009.
Prevalence and Enumeration of Escherichia coli O157:H7 and Salmonella in U.S. Abattoirs That Process Fewer Than 1,000 Head of Cattle Per Day - (Peer Reviewed Journal)
Bosilevac, J.M., Arthur, T.M., Bono, J.L., Brichta-Harhay, D.M., Kalchayanand, N., King, D.A., Shackelford, S.D., Wheeler, T.L., Koohmaraie, M. 2009. Prevalence and Enumeration of Escherichia coli O157:H7 and Salmonella in U.S. Abattoirs That Process Fewer Than 1,000 Head of Cattle Per Day. Journal of Food Protection. 72(6):1272-1278.
International Comparison of Clinical, Bovine, and Environmental Escherichia coli O157 Isolates on the Basis of Shiga Toxin-Encoding Bacteriophage Insertion Site Genotypes - (Peer Reviewed Journal)
Whitworth, J.H., Fegan, N., Keller, J., Gobius, K.S., Bono, J.L., Call, D.R., Hancock, D.D., Besser, T.E. 2008. International Comparison of Clinical, Bovine, and Environmental Escherichia coli O157 Isolates on the Basis of Shiga Toxin-Encoding Bacteriophage Insertion Site Genotypes. Applied and Environmental Microbiology. 74(23):7447-7450.
Comparison of effects of antimicrobial interventions on multidrug-resistant Salmonella, susceptible Salmonella, and Escherichia coli O157:H7 - (Peer Reviewed Journal)
Arthur, T.M., Kalchayanand, N., Bosilevac, J.M., Harhay, D.M., Shackelford, S.D., Bono, J.L., Wheeler, T.L., Koohmaraie, M. 2008. Comparison of effects of antimicrobial interventions on multidrug-resistant Salmonella, susceptible Salmonella, and Escherichia coli O157:H7. Journal of Food Protection 71(11):2177-2181.
Microbial Community Structure of Feedlot Cattle Feces - (Abstract Only)
Durso, L.M., Harhay, G.P., Clawson, M.L., Laegreid, W.W., Bono, J.L., Keen, J.E., Smith, T.P. Microbial community structure of feedlot cattle feces. In: Proceedings of the 108th General Meeting of the American Society for Microbiology, June 1-5, 2008, Boston, Massachusetts. 2008 CDROM.
Association of Escherichia coli O157:H7 tir polymorphisms in human infection - (Peer Reviewed Journal)
Bono, J.L., Keen, J.E., Clawson, M.L., Durso, L.M., Heaton, M.P., Laegreid, W.W. 2007. Association of Escherichia coli O157:H7 tir polymorphisms with human infection. BMC Infectious Diseases. 7:98.
Molecular Serotyping of Escherichia coli O111:H8 - (Peer Reviewed Journal)
Durso, L.M., Bono, J.L., Keen, J.E. 2007. Molecular Serotyping of Escherichia coli O111:H8. Journal of Microbiological Methods. 69:381-383.
GREATER DIVERSITY OF SHIGA TOXIN-ENCODING BACTERIOPHAGE INSERTION SITES AMONG ESCHERICHA COLI O157:H7 ISOLATES FROM CATTLE THAN IN THOSE FROM HUMANS - (Peer Reviewed Journal)
Besser, T.E., Shaikh, N., Holt, N.J., Tarr, P.I., Konkel, M.E., Malik-Kale, P., Walsh, C.W., Whittam, T.S., Bono, J.L. 2007. Greater diversity of shiga toxin-encoding bacteriophage insertion sites among Eschericha coli O157:H7 isolates from cattle than from humans. Applied and Environmental Microbiology. 73(3):671-679.
Oral neomycin therapy reduces shiga-toxigenic E. coli (STEC) O157 fecal shedding in naturally-infected beef cattle - (Abstract Only)
Keen, J.E., Durso, L.M., Bono, J.L., Laegreid, W.W. 2006. Oral neomycin therapy reduces shiga-toxigenic E. coli (STEC) O157 fecal shedding in naturally-infected beef cattle [abstract]. 2006 Conference of Research Workers in Animal Disease. p.148.
DISCRIMINATION OF ESCHERICHIA COLI O157:H7 ISOLATES BY GENOTYPING SINGLE NUCLEOTIDE POLYMORPHISMS - (Abstract Only)
Bono, J.L., Keen, J.E., Laegreid, W.W. 2006. Discrimination of Escherichia coli O157:H7 isolates by genotyping single nucleotide polymorphisms [abstract]. Proceedings of the 6th International Symposium on Shiga Toxin (Verocytotoxin)--Producing Escherichia coli Infections, October 29 - November 1, 2006, Melbourne, Australia. Poster No. P13.1.07.
ASSOCIATION OF SPECIFIC PER AND FLHD ALLELES IN ESCHERICHIA COLI O157:H7 WITH SORBITOL FERMENTATION - (Abstract Only)
Bono, J.L., Keen, J.E., Laegreid, W.W. 2006. Association of specific per and flhd alleles in Escherichia coli O157:H7 with sorbitol fermentation [abstract]. American Society of Microbiologists. Poster No. C-056.
SHIGA TOXIN BACTERIOPHAGE INSERTION SITES IDENTIFY DIVERSE ESCHERIHICA COLI O157:H7 STRAIN TYPES WITH DISTRIBUTIONS BIASED TO THE BOVINE HOST RESERVOIR - (Abstract Only)
Besser, T.E., Bono, J.L., Shaikh, N., Tarr, P.I. 2006. Shiga toxin bacteriophage insertion sites identify diverse Escherihica coli O157:H7 strain types with distributions biased to the bovine host reservoir [abstract]. American Society of Microbiologists. Poster No. Z-017.
SHIGA-TOXIGENIC ESCHERICHIA COLI O157 IN AGRICULTURAL FAIR LIVESTOCK, UNITED STATES - (Peer Reviewed Journal)
Keen, J.E., Wittum, T.E., Dunn, J.R., Bono, J.L., Durso, L.M. 2006. Shiga-toxigenic Escherichia coli O157 in agricultural fair livestock, United States. Emerging Infectious Diseases 12(5):780-786.
MOLECULAR SEROTYPING OF ESCHERICHIA COLI O26:H11 - (Peer Reviewed Journal)
Durso, L.M., Bono, J.L., Keen, J.E. 2005. Molecular serotyping of Escherichia coli O26:H11. Applied and Environmental Microbiology. 71(8):4941-4944.
DISCRIMINTION OF ESCHERICHIA COLI O157:H7 ISOLATES BY GENOTYPING SINGLE NUCLEOTIDE POLYMORPHISMS - (Abstract Only)
Bono, J.L., Keen, J.E., Clawson, M.L., Heaton, M.P., Chitko Mckown, C.G., Miller, L.C., Laegreid, W.W. 2005. Discrimintion of Escherichia coli O157:H7 isolates by genotyping single nucleotide polymorphisms. [abstract] American Society of Microbiologists. p. 318.
MULTIPLEX PCR FOR SEROTYPING ESCHERICHIA COLI O26:H11 - (Abstract Only)
Durso, L.M., Bono, J.L., Keen, J.E. 2004. Multiplex PCR for serotyping Escherichia coli O26:H11 [abstract]. Research Workers in Animal Diseases Conference. p. 121.
INTERFERON TYPE I RESPONSE IN PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS-INFECTED MARC-145 CELLS - (Peer Reviewed Journal)
Miller, L.C., Laegreid, W.W., Bono, J.L., Chitko McKown, C.G., Fox, J.M. 2004. Interferon type I response in porcine reproductive and respiratory syndrome virus-infected MARC-145 cells. Archives of Virology. 149(12):2453-2463.
EARLY INNATE IMMUNE RESPONSE IN PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS-INFECTED MARC-145 CELLS - (Abstract Only)
Miller, L.C., Fox, J.M., Bono, J.L., Chitko Mckown, C.G., Laegreid, W.W. 2004. Early innate immune response in porcine reproductive and respiratory syndrome virus-infected marc-145 cells [abstract]. 7th Int. Symp. Positive Strand RNA Viruses. Paper No. P2-G1.
DISCRIMINATION OF ESCHERICHIA COLI O157:H7 FROM OTHER BACTERIA BY GENOTYPING SINGLE NUCLEOTIDE POLYMORPHISMS - (Abstract Only)
Bono, J.L., Keen, J.E., Clawson, M.L., Heaton, M.P., Fox, J.M., Chitko McKown, C.G., Laegreid, W.W. 2004. Discrimination of Escherichia coli O157:H7 from other bacteria by genotyping single nucleotide polymorphisms [abstract]. American Society for Microbiology. Paper No. C-311.
EVALUATION OF A REAL-TIME PCR KIT FOR DETECTING ESCHERICHIA COLI O157 IN BOVINE FECAL SAMPLES - (Peer Reviewed Journal)
BONO, J.L., KEEN, J.E., MILLER, L.C., FOX, J.M., CHITKO MCKOWN, C.G., HEATON, M.P., LAEGREID, W.W. EVALUATION OF A REAL-TIME PCR KIT FOR DETECTING ESCHERICHIA COLI O157 IN BOVINE FECAL SAMPLES. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2004. V. 70. P. 1855-1857.
GENE EXPRESSION PROFILING OF BOVINE MACROPHAGES IN RESPONSE TO ESCHERICHIA COLI O157:H7 LIPOPOLYSACCHARIDE - (Abstract Only)
CHITKO MCKOWN, C.G., FOX, J.M., MILLER, L.C., HEATON, M.P., BONO, J.L., KEEN, J.E., GROSSE, W.M., LAEGREID, W.W. GENE EXPRESSION PROFILING OF BOVINE MACROPHAGES IN RESPONSE TO ESCHERICHIA COLI O157:H7 LIPOPOLYSACCHARIDE. IMMUNOLOGY RESEARCH WORKSHOP. 2003. ABSTRACT NO. 23.
SHEDDING OF SALMONELLA SPP BY LIVESTOCK AT AGRICULTURAL FAIRS - (Abstract Only)
WITTUM, T.E., KEEN, J.E., HANSEN, G.E., MOLLENKOPF, D.F., FUNK, J.A., DUNN, J.R., BONO, J.L., FONTENOT, M.E. SHEDDING OF SALMONELLA SPP BY LIVESTOCK AT AGRICULTURAL FAIRS. RESEARCH WORKERS IN ANIMAL DISEASES CONFERENCE PROCEEDINGS. 2003. ABSTRACT NO. 61.
FECAL SHEDDING OF SHIGA-TOXIGENIC E. COLI (STEC) O157 BY LIVESTOCK AT AGRICULTURAL FAIRS IN THE UNITED STATES - (Abstract Only)
KEEN, J.E., WITTUM, T.E., DUNN, J.R., BONO, J.L., HANSEN, G.E., FONTENOT, M.E. FECAL SHEDDING OF SHIGA-TOXIGENIC E. COLI (STEC) O157 BY LIVESTOCK AT AGRICULTURAL FAIRS IN THE UNITED STATES. RESEARCH WORKERS IN ANIMAL DISEASES CONFERENCE PROCEEDINGS. 2003. ABSTRACT NO. 62.
GENE EXPRESSION PROFILING OF BOVINE MACROPHAGES IN RESPONSE TO ESCHERICHIA COLI O157:H7 LIPOPOLYSACCHARIDE - (Peer Reviewed Journal)
CHITKO MCKOWN, C.G., FOX, J.M., MILLER, L.C., HEATON, M.P., BONO, J.L., KEEN, J.E., GROSSE, W.M., LAEGREID, W.W. GENE EXPRESSION PROFILING OF BOVINE MACROPHAGES IN RESPONSE TO ESCHERICHIA COLI O157:H7 LIPOPOLYSACCHARIDE. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY. 2004. V. 28. P. 635-645.
IDENTIFICATION OF RESPONSIVE GENES IN PRRSV-INFECTED PULMONARY MACROPHAGES USING SEMI-QUANTITATIVE REAL-TIME REVERSE TRANSCRIPTION PCR (RT-PCR) - (Abstract Only)
MILLER, L.C., CHITKO MCKOWN, C.G., BONO, J.L., LAEGREID, W.W., FOX, J.M. IDENTIFICATION OF RESPONSIVE GENES IN PRRSV-INFECTED PULMONARY MACROPHAGES USING SEMI-QUANTITATIVE REAL-TIME REVERSE TRANSCRIPTION PCR (RT-PCR). RESEARCH WORKERS IN ANIMAL DISEASES CONFERENCE PROCEEDINGS. 2003. ABSTRACT NO. 155.
EFFECT OF EXOGENOUS GLUCOCORTICOIDS AND DIETARY CHANGE ON WINTER AND SUMMER STEC O157 FECAL SHEDDING IN NATURALLY-INFECTED BEEF CATTLE - (Abstract Only)
KEEN, J.E., LAEGREID, W.W., CHITKO MCKOWN, C.G., BONO, J.L., FOX, J.M., CLAWSON, M.L., HEATON, M.P. EFFECT OF EXOGENOUS GLUCOCORTICOIDS AND DIETARY CHANGE ON WINTER AND SUMMER STEC O157 FECAL SHEDDING IN NATURALLY-INFECTED BEEF CATTLE. RESEARCH WORKERS IN ANIMAL DISEASES CONFERENCE PROCEEDINGS. 2003. ABSTRACT NO. 83.
ASSOCIATION OF NOS2A HAPLOTYPES AND BACTERICIDAL ACTIVITY OF BOVINE MONOCYTE-DERIVED MACROPHAGES - (Abstract Only)
CHITKO MCKOWN, C.G., HEATON, M.P., GROSSE, W.M., KEEN, J.E., BONO, J.L., CLAWSON, M.L., FOX, J.M., MILLER, L.C., LAEGREID, W.W. ASSOCIATION OF NOS2A HAPLOTYPES AND BACTERICIDAL ACTIVITY OF BOVINE MONOCYTE-DERIVED MACROPHAGES. AMERICAN ASSOCIATION OF IMMUNOLOGISTS PROCEEDINGS. 2003. Abstract No. 150.1.
SINGLE NUCLEOTIDE POLYMORPHISMS IN THE RFB LOCUS OF ESCHERICHIA COLI O157 STEC AND NON-STEC ISOLATES - (Abstract Only)
BONO, J.L., KEEN, J.E., LAEGREID, W.W. SINGLE NUCLEOTIDE POLYMORPHISMS IN THE RFB LOCUS OF ESCHERICHIA COLI O157 STEC AND NON-STEC ISOLATES. INTERNATIONAL SYMPOSIUM AND WORKSHOP ON SHIGA TOXIN ... ESCHERICHIA COLI. 2003. Abstract No. P77.
OCCURRENCE OF STEC O157, O111, AND O26 IN LIVESTOCK AT AGRICULTURAL FAIRS IN THE UNITED STATES - (Abstract Only)
KEEN, J.E., WITTUM, T.E., DUNN, J.R., BONO, J.L., FONTENOT, M.E. OCCURRENCE OF STEC O157, O111, AND O26 IN LIVESTOCK AT AGRICULTURAL FAIRS IN THE UNITED STATES. INTERNATIONAL SYMPOSIUM AND WORKSHOP ON SHIGA TOXIN ... ESCHERICHIA COLI. 2003. Abstract No. O-10.
SEQUENCE DIVERSITY OF ESCHERICHIA COLI O157:H7 ISOLATES - (Abstract Only)
LAEGREID, W.W., BONO, J.L., CLAWSON, M.L., KEEN, J.E. SEQUENCE DIVERSITY OF ESCHERICHIA COLI O157:H7 ISOLATES. INTERNATIONAL SYMPOSIUM AND WORKSHOP ON SHIGA TOXIN ... ESCHERICHIA COLI. 2003. Abstract p. 137.
DETECTION OF E. COLI O157 IN BOVINE FECES USING THE R.A.P.I.D. SYSTEM E. COLI O157 DETECTION KIT - (Abstract Only)
GENOMIC SAMPLE SEQUENCING OF THREE SHIGA-TOXIGENIC E. COLI (STEC) ISOLATED FROM BOVINE FECES - (Abstract Only)
GENOMIC SAMPLE SEQUENCING OF THREE BOVINE SHIGA-TOXIGENIC E. COLI (STEC) O157, O111 AND O26 - (Abstract Only)