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United States Department of Agriculture

Agricultural Research Service

Related Topics

Allen D Smith
Diet, Genomics and Immunology Laboratory
General Biological Science

Phone: (301) 504-8577 ext. 280
Fax: (301) 504-9062
Room 228

10300 BALTIMORE AVENUE
307 BARC-EAST
BLDG 307-C BARC-EAST
BELTSVILLE , MD 207052350

Projects
Dietary Regulation of Immunity and Inflammation
Appropriated (D)
  Accession Number: 426497

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
An in-depth comparison of the porcine, murine and human inflammasomes; lessons from the porcine genome and transcriptome -
Dawson, H.D., Smith, A.D., Chen, C.T., Urban Jr, J.F. 2016. An in-depth comparison of the porcine, murine and human inflammasomes; lessons from the porcine genome and transcriptome. Veterinary Microbiology. pii:S0378-1135(16)30137-7. doi: 10.1016/j.vetmic.2016.05.013.
Acidic Chitinase Limits Allergic Inflammation and Promotes Intestinal Nematode Expulsion -
Vannella, K.M., Ramalingam, T.R., De Queiroz, P.R., Sciurba, J., Barron, L., Borthwick, L., Smith, A.D., Mentink-Kane, M., White, S., Thompson, R.W., Cheever, A.W., Bock, K., Moore, I., Fitz, L.J., Urban Jr, J.F., Wynn, T.A. 2016. Acidic Chitinase Limits Allergic Inflammation and Promotes Intestinal Nematode Expulsion. Nature Immunology. 17(5):538-44 doi: 101038/ni.3417.
Type 3 muscarinic receptors contribute to intestinal mucosal homeostasis and clearance of nippostrongylus brasiliensis through induction of Th2 cytokines -
Mclean, L.P., Smith, A.D., Cheung, L., Urban Jr, J.F., Sun, R., Grinchuk, V., Dasai, Zhao, A., Raufman, J.P., Shea-Donohue, T. 2016. Type 3 muscarinic receptors contribute to intestinal mucosal homeostasis and clearance of nippostrongylus brasiliensis through induction of Th2 cytokines. American Journal of Physiology - Gastrointestinal and Liver Physiology. doi: 10.1152/ajpgi.00461.2014.
Understanding the host-adapted state of Citrobacter rodentium by transcriptomic analysis -
Smith, A.D., Yan, X., Chen, C.T., Dawson, H.D., Bhagwat, A.A. 2016. Understanding the host-adapted state of Citrobacter rodentium by transcriptomic analysis. Archives Of Microbiology. 198:353-362.
IL-25 or IL-17E protects against high-fat diet-induced hepatic steatosis in mice dependent upon IL-13 activation of STAT6 -
Wang, A., Yang, Z., Grinchuk, V., Smith, A.D., Qin, B., Lu, N., Wang, D., Wang, H., Ramalingam, T.R., Wynn, T.A., Urban Jr, J.F., Shea-Donohue, T., Zhao, A. 2015. IL-25 or IL-17E protects against high-fat diet-induced hepatic steatosis in mice dependent upon IL-13 activation of STAT6. Journal of Immunology. 195(10): 4771-4780. doi:10.4049/jimmunol.1500337.
Immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis -
Fricke, F.W., Song, Y., Wang, A., Smith, A.D., Grinchuk, V., Mongodin, E., Pei, C., Ma, B., Lu, N., Urban Jr, J.F., Shea-Donohue, T. 2015. Immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis. BMC Microbiome. doi: 10.1186/S40168-015-0103-8.
Swarm and swim motilities of Salmonella enterica serovar Typhimurium and role of osmoregulated periplasmic glucans -
Dharne, M., Kannan, P., Murphy, C.F., Smith, A.D., Bhagwat, A.A. 2015. Swarm and swim motilities of Salmonella enterica serovar Typhimurium and role of osmoregulated periplasmic glucans. Microbiology Discovery. 3:3.
Type 3 Muscarinic Receptors Contribute to Clearance of Citrobacter rodentium -
Mclean, L.P., Smith, A.D., Cheung, L., Sun, R., Grinchuk, V., Vanuytsel, T., Desai, N., Urban Jr, J.F., Zhao, A., Raufman, J.P., Shea-Donohue, T. 2015. Type 3 Muscarinic Receptors Contribute to Clearance of Citrobacter rodentium. Inflammatory Bowel Diseases. DOI: 10.1097/MIB.0000000000000408.
Genetic deletion of IL-25 (IL-17E) confers resistance to dextran sulfate sodium-induced colitis in mice -
Wang, A., Smith, A.D., Li, Y., Urban Jr, J.F., Thirumalai, R.R., Wynn, T., Lu, N., Shea-Donohue, T., Yang, Z., Zhao, A. 2014. Genetic deletion of IL-25 (IL-17E) confers resistance to dextran sulfate sodium-induced colitis in mice. Cell & Bioscience. DOI: 10.1186/2045-3701-4-72.
Evaluation of ribosomal RNA removal protocols for Salmonella RNA-Seq projects -
Bhagwat, A., Z Ying, I., Smith, A. 2013. Evaluation of ribosomal RNA removal protocols for Salmonella RNA-Seq projects. Advances in Microbiology. 4:25-32.
Determining RNA quality for NextGen sequencing: some exceptions to the gold standard rule of 23S to 16S rRNA ratio -
Bhagwat, A.A., Ying, I., Karns, J.S., Smith, A.D. 2013. Determining RNA quality for NextGen sequencing: some exceptions to the gold standard rule of 23S to 16S rRNA ratio. Advances in Microbiology. 1:10.
Parasitic nematode-induced modulation of body weight and associated metabolic dysfunction in mouse models of obesity -
Yang, Z., Grinchuk, V., Smith, A.D., Qin, B., Bohl, J.A., Sun, R., Notari, L., Zhang, Z., Sesaki, H., Urban Jr, J.F., Shea-Donahue, T., Zhao, A. 2013. Parasitic nematode-induced modulation of body weight and associated metabolic dysfunction in mouse models of obesity. Infection and Immunity. 81(6):1905-1914.
Selenium status alters the immune response and expulsion of adult Heligmosomodies bakeri in mice -
Smith, A.D., Cheung, L., Shea-Donohue, T., Urban Jr, J.F. 2013. Selenium status alters the immune response and expulsion of adult Heligmosomodies bakeri in mice. Infection and Immunity. 81(7):2546-2553.
Hypervirulent- host-associated Citrobacter rodentium cells have poor acid tolerance -
Smith, A.D., Bhagwat, A.A. 2013. Hypervirulent- host-associated Citrobacter rodentium cells have poor acid tolerance. Current Microbiology. 66(5):522-526.
Role of anionic charges of osmoregulated periplasmic glucans of Salmonella enterica Serovar Typhimurium SL1344 in mice virulence Reprint Icon -
Bhagwat, A.A., Kannan, P., Leow, Y., Dharne, M., Smith, A.D. 2012. Role of anionic charges of osmoregulated periplasmic glucans of Salmonella enterica Serovar Typhimurium SL1344 in mice virulence. Archives Of Microbiology. 194(6):541-548.
Long-term selenium deficiency increases the pathogenicity of a Citrobacter rodentium infection in mice -
Smith, A.D., Cheung, L., Botero, S. 2011. Long-term selenium deficiency increases the pathogenicity of a Citrobacter rodentium infection in mice. Biological Trace Element Research. Available: dx.doi.org/10.1007/S12011-011-9071-4.
The pathogenicity of an enteric Citrobacter rodentium infection is enhanced by deficiencies in the antioxidants selenium and vitamin E -
Smith, A.D., Botero, S., Shea-Donohue, T., Urban Jr, J.F. 2011. The pathogenicity of an enteric Citrobacter rodentium infection is enhanced by deficiencies in the antioxidants selenium and vitamin E. Infection and Immunity. 79:1471-1478.
Enteric pathogens and gut function: role of cytokines and STATs -
Shea-Donohue, T., Fasano, A., Smith, A.D., Zhao, A. 2010. Enteric pathogens and gut function: role of cytokines and STATs. Gut Microbes. 1(5):316-324.
Osmoregulated periplasmic glucans synthesis gene family of Shigella flexneri Reprint Icon -
Liu, L., Dharne, M., Kannan, P., Smith, A.D., Meng, J., Fan, M., Boren, T., Ranallo, R., Bhagwat, A.A. 2010. Osmoregulated periplasmic glucans synthesis gene family of Shigella flexneri. Archives Of Microbiology. 192(3):167-174.
Motility revertants of opgGH mutants of Salmonella enterica serovar Typhimurium remain defective in mice virulence Reprint Icon -
Kannan, P., Dharne, M., Smith, A.D., Karns, J.S., Bhagwat, A.A. 2009. Motility revertants of opgGH mutants of Salmonella enterica serovar Typhimurium remain defective in mice virulence. Current Microbiology. 59(6):641-645.
Osmoregulated periplasmic glucans are needed for competitive growth and biofilm formation by Salmonella enterica serovar Typhimurium in leafy-green vegetable wash-waters and colonization in mice -
Liu, L., Tan, S., Jun, W., Smith, A.D., Meng, J., Bhagwat, A.A. 2008. Osmoregulated periplasmic glucans are needed for competitive growth and biofilm formation by Salmonella enterica serovar Typhimurium in leafy-green vegetable wash-waters and colonization in mice. FEMS Microbiology Letters. 292:13-20.
Characterization of Salmonella isolates from retail foods based on serotyping, pulse field gel electrophoresis, antibiotic resistance and other phenotypic properties Reprint Icon -
Xia, X., Zhao, S., Smith, A.D., Mcevoy, J.L., Jianghong, M., Bhagwat, A.A. 2009. Characterization of Salmonella isolates from retail foods based on serotyping, pulse field gel electrophoresis, antibiotic resistance and other phenotypic properties. International Journal of Food Microbiology. 129:93-98.
Osmoregulated periplasmic glucans of Salmonella enterica serovar Typhimurium are required for optimal virulence in mice Reprint Icon -
Bhagwat, A.A., Jun, W., Liu, L., Porteen, K., Dharne, M., Pheh, B., Tall, B.D., Kothary, M.H., Gross, K.C., Angle, S., Jianghong, M., Smith, A.D. 2009. Osmoregulated periplasmic glucans of Salmonella enterica serovar Typhimurium are required for optimal virulence in mice. Microbiology. 155:229-237.
Copper deficiency increases the virulence of amyocarditic and myocarditic strains of cocksackievirus B3 in Mice -
Smith, A.D., Botero, S., Levander, O. 2008. Copper deficiency increases the virulence of amyocarditic and myocarditic strains of cocksackievirus B3 in mice. Journal of Nutrition. 138(5):849-55.
Intestinal inflammation caused by magnesium deficiency alters basal and oxidative stress-induced intestinal function -
Scanlan, B.J., Tuft, B., Elfrey, J.E., Smith, A., Zhao, A., Morimoto, M., Chmielinska, J.J., Tejero-Taldo, M.I., Mak, I.T., Weglicki, W.B., and Shea-Donohue, T. 2007. Intestinal inflammation caused by magnesium deficiency alters basal and oxidative stress-induced intestinal function. Molecular and Cellular Biochemistry. Jul27;[Epub ahead of print].
Selenium (Se) deficiency alters intestinal diaphorase activity in mice infected with the intestinal parasitic worm Heligmosomoides polygyrus -
Urban Jr, J.F., Smith, A.D., Botero, S., Dawson, H.D., Anthony, R., Gause, W., Shea-Donohue, T. 2007. Selenium (Se) deficiency alters intestinal diaphorase activity in mice infected with the intestinal parasitic worm Heligmosomoides polygyrus. Experimental Biology.
COPPER DEFICIENCY INCREASES THE VIRULENCE OF COXSACKIEVIRUS B3 INFECTIONS IN MICE. -
Smith, A.D., Botero, S., Levander, O.A. 2006. Copper deficiency increases the virulence of coxsackievirus B3 infections in mice [abstract]. Federation of American Societies for Experimental Biology Conference. 20(4):A554.
GLUTATHIONE IS REQUIRED FOR EFFICIENT PRODUCTION OF INFECTIOUS PICORNAVIRUSES VIRIONS -
Smith, A.D., Dawson, H.D. 2006. Glutathione is required for efficient production of infectious picornavirus virions. Electronic Virology. Available: http://www.sciencedirect.com/
EFFECT OF PHYSICAL RESTRAINT ON OXIDATIVE STRESS IN MICE FED A SELENIUM AND VITAMIN E DEFICIENT DIET -
South, P., Smith, A.D., Guidry, C.A., Levander, O.A. 2006. Effect of physical restraint on oxidative stress in mice fed a selenium and vitamin e deficient diet[abstract]. Biological Trace Element Research. 109(3):293-300.
EFFECT OF PHYSICAL RESTRAINT ON OXIDATIVE STRESS IN MICE FED A SELENIUM AND VITAMIN E DEFICIENT DIET -
South, P.K., Smith, A.D., Guidry, C.A., Levander, O.A. 2006. Effect of physical restraint on oxidative stress in mice fed a selenium and vitamin E deficient diet. Biological Trace Element Research. 109(3):293-300.
PRETREATMENT OF HELA CELLS WITH THE GLUTATHIONE SYNTHESIS INHIBITOR, L-BUTHIONINE-SULFOXIMINE (BSO), INHIBITS REPLICATION OF PICORNAVIRUSES -
Smith, A.D. 2005. Pretreatment of hela cells with the glutathione synthesis inhibitor, l-buthionine-sulfoximine (bso), inhibits replication of picornaviruses. Federation of American Societies for Experimental Biology Conference.
EFFECT OF SELENIUM AND/OR VITAMIN E DEFICIENCIES ON HELIGMOSOMOIDES POLYGYRUS INFECTIONS IN MICE -
Smith, A.D., Madden, K. B., Au Yeung, K., Zhao, A., Elfrey, J., Finkelman, F., Levander, O.A., Shea Donohue, P.T., and Urban Jr, J.F. 2005. Effect of selenium and/or vitamin E deficiencies on Heligmosomoides polygyrus infections in mice. Journal of Nutrition. 135:830-836.
IMPACT OF VITAMIN E OR SELENIUM DEFICIENCY ON NEMATODE-INDUCED ALERATIONS IN MURINE INTESTINAL FUNCTION -
Auyeung, K., Smith, A.D., Zhao, A., Madden, K., Elfrey, J., Sullivan, C., Levander, O.A., Urban Jr, J.F., Shea Donohue, P.T. 2005. Impact of vitamin E or selenium deficiency on nematode-induced alerations in murine intestinal function. Experimental Parasitology. 109:201-208.
MEMBRANE-DERIVED OLIGOSACCHARIDES OF SALMONELLA ENTERICA SEROVAR TYPHIMURIUM -
Jun, W., Bhagwat, A.A., Gross, K.C., Smith, A.D., Angle, S.J. 2004. Membrane-derived oligosaccharides of Salmonella enterica serovar Typhimurium. American Society for Microbiology Annual Meeting. p. 107.
SELENIUM (SE) AND VITAMIN E (VE) DEFICIENCIES IMPAIR INTESTINAL FUNCTION AND RESULT IN PERSISTENT INFECTION WITH HELIGMOSOMOIDES POLYGYRUS -
Smith, A.D., Madden, K., Zhao, A., Auyeung, K., Levander, O.A., Finkelman, F., Urban Jr, J.F., Shea Donohue, P.T. 2004. Selenium (se) and vitamin E (ve) deficiencies impair intestinal function and result in persistent infection with heligmosomoides polygyrus [abstract]. Federation of American Society of Experimental Biology Journal. 18(4):A9.
STUDY OF THE EFFECT OF COPPER DEFICIENCY ON CVB3/0 AND CVB3/20 INFECTIONS: THE LIGHT MICROSCOPIC EVALUATION OF THE PANCREATA AND HEARTS OF C3H/HEJ MICE -
Nelva, B., Levander, O.A., Hines, F., Smith, A.D. 2004. Study of the effect of copper deficiency on cvb3/0 and cvb3/20 infections: The light microscopic evaluation of the pancreata and hearts of c3h/hej mice [abstract]. Toxicologic Pathology. 32(1):146.
CRYSTAL STRUCTURE OF A HUMAN RHINOVIRUS TYPE 14 (HRV14): HUMAN IMMUNO- DEFICIENCY VIRUS TYPE 1 (HIV-1) V3 LOOP CHIMERIC VIRUS THAT INDUCES NEUTRALIZING ANTIBODIES AGAINST HIV-1. -
Ding, J., Smith, A.D., Geisler, S., Arnold, G., Arnold, E. 2002. Crystal structure of a human rhinovirus type 14 (hrv14): human immuno- deficiency virus type 1 (hiv-1) v3 loop chimeric virus that induces neutralizing antibodies against hiv-1.. Structure.
EFFECTS OF DIETARY IRON OVERLOAD ON GLUTATHIONE PEROXIDASE KNOCK-OUT MICE -
South, P., Levander, O.A., Smith, A.D. 2002. Effects of dietary iron overload on glutathione peroxidase knock-out mice. Biological Trace Element Research.
EFFECT OF GOLD (I) COMPOUNDS ON THE VIRULENCE OF AN AMYOCORDITIC STRAIN OF COXSACKIEVIRUS -
Smith, A.D., South, P.K., Levander, O.A. 2001. Effect of gold (i) compounds on the virulence of an amyocorditic strain of coxsackievirus. Biological Trace Element Research.
HIGH THROUGHPUT 96-WELL MICROPLATE ASSAY FOR DETERMINING THE SPECIFIC ACTIVITIES OF GLUTATHIONE PEROXIDASE AND THIOREDOXIN REDUCTASE -
Smith, A.D., Levander, O.A. 2002. High throughput 96-well microplate assay for determining the specific activities of glutathione peroxidase and thioredoxin reductase. Methods in Enzymology.
Last Modified: 5/2/2016
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