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United States Department of Agriculture

Agricultural Research Service

Related Topics

Chellappan Padmanabhan
Vegetable Research
Research Plant Pathologist

Phone: (843) 402-5300
Fax:

2700 SAVANNAH HWY
CHARLESTON , SC 249145334

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Using small RNA deep sequencing data to detect siRNA duplexes induced by plant viruses -
Liu, C., Sun, Y., Li, R., Padmanabhan, C., Ruan, J., Kreuze, J.F., Ling, K., Fei, Z., Gao, S. 2017. Using small RNA deep sequencing data to detect siRNA duplexes induced by plant viruses. Genes 2017, 8, 163; doi:10.3390/genes8060163.
Functional characterization of the triple gene block 1 (TGB1) gene of Pepino mosaic virus in tomato -
Tomato yellow leaf curl virus C4 protein is a determinant of disease phenotype in tomato -
Exploring the trans-acting short interfering RNAs (ta-siRNAs) technology for virus control in plants -
Molecular and biological characterization of Tomato mottle mosaic virus and development of RT-PCR detection -
Sui, X., Zheng, Y., Li, R., Padmanabhan, C., Tian, T., Groth-Helms, D., Keinath, A.P., Fei, Z., Wu, Z., Ling, K. 2017. Molecular and biological characterization of Tomato mottle mosaic virus and development of RT-PCR detection. Plant Disease. 101:704-711.
Molecular and biological characterization of Tomato mottle mosaic virus and development of reverse transcription-polymerase chain reaction for species-specific detection -
Sui, X., Zheng, Y., Li, R., Padmanabhan, C., Tian, T., Groth-Helms, D., Keinath, A.P., Fei, Z., Wu, Z., Ling, K. 2016. Molecular and biological characterization of Tomato mottle mosaic virus and development of reverse transcription-polymerase chain reaction for species-specific detection. Tomato Disease Workshop. Pgs 16-17.
A single base pair in the right terminal domain of Tomato planta macho viroid is a virulence determinant factor on tomato -
Li, R., Padmanabhan, C., Ling, K. 2017. A single base pair in the right terminal domain of Tomato planta macho viroid is a virulence determinant factor on tomato. Virology. 500(2017)238-246.
VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs -
Zheng, Y., Gao, S., Padmanabhan, C., Li, R., Galvez, M., Gutierrez, D., Fuentes, S., Ling, K., Kreuze, J., Fei, Z. 2016. VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs. Virology. 500(2017)130-138.
Identification of defense-related genes associated with tomato Sw-7 line against Tomato spotted wilt virus in tomato through transcriptome analysis -
Transcriptome profiling to discover defense-related genes associated with resistance line ty-5 against Tomato yellow leaf curl virus in tomato -
Genetic diversity, host range and disease resistance to the emerging Tomato mottle mosaic virus on tomato -
miRNA863-3p sequentially targets negative regulators—atypical receptor-like Pseudokinases—and serrate, a positive regulator of plant immunity upon infection -
Niu, D., Lii, Y.E., Padmanabhan, C., Lei, L., Peralta, K., Jiang, C., Guo, J., Coaker, G., Jin, H. 2016. miRNA863-3p sequentially targets negative regulators—atypical receptor-like Pseudokinases—and serrate, a positive regulator of plant immunity upon infection. Nature Communications. doi: 10.1038/ncomms11324; 7:11324.
Molecular, serological and biological characterization of the emerging tomato mottle mosaic virus on tomato -
Ling, K., Sui, X., Li, R., Padmanabhan, C. 2016. Molecular, serological and biological characterization of the emerging tomato mottle mosaic virus on tomato. 5th International Symposium on Tomato Diseases. Abstract Book. p39.
Complete genome sequence of a tomato infecting tomato mottle mosaic virus in New York -
Padmanabhan, C., Zheng, Y., Li, R., Fei, Z., Ling, K. 2015. Complete genome sequence of a tomato infecting tomato mottle mosaic virus in New York. Genome Announcements. 3(6):e01523-15. doi:10.1128/genomeA.01523-15.
Complete genome sequence of Southern tomato virus naturally infecting tomatoes in Bangladesh using small RNA deep sequencing -
Padmanabhan, C., Zheng, Y., Li, R., Fei, Z., Ling, K. 2015. Complete genome sequence of Southern tomato virus naturally infecting tomatoes in Bangladesh using small RNA deep sequencing. Genome Announcements. doi: 10.1128/genomeA.01522-15 3(6): e01522-15.
Identification of differentially expressed genes in tomato associated with R-lines Ty-5 against tomato yellow leaf curl virus (TYLCV) and Sw-7 against tomato spotted wilt virus (TSWV) -
Padmanabhan, C., Zheng, Y., Shekaste-Band, R., Stewart, K.S., Hasegawa, D., Scott, J.W., Fei, Z., Ling, K. 2015. Identification of differentially expressed genes in tomato associated with R-lines Ty-5 against tomato yellow leaf curl virus (TYLCV) and Sw-7 against tomato spotted wilt virus (TSWV). 30th Annual Tomato Disease Workshop. p19.
Complete genome sequence of southern tomato virus identified from China using next generation sequencing -
Padmanabhan, C., Zheng, Y., Li, R., Sun, S., Zhang, D., Liu, Y., Fei, Z., Ling, K. 2015. Complete genome sequence of southern tomato virus identified from China using next generation sequencing. Genome Announcements. 3(5):e01226-15.
Transcriptome analysis to identify differentially expressed genes associated with ty-5 against tomato yellow leaf curl virus and Sw-7 against tomato spotted wilt virus in tomato -
Padmanabhan, C., Zheng, Y., Shekaste-Band, R., Scott, J.W., Fei, Z., Ling, K. 2015. Transcriptome analysis to identify differentially expressed genes associated with ty-5 against tomato yellow leaf curl virus and Sw-7 against tomato spotted wilt virus in tomato. 3rd Plant Genomics Congress=USA. Meeting Abstract. P.2.
Small RNA deep sequencing revealed that mixed infection of known and unknown viruses were common in field collected vegetable samples -
Padmanabhan, C., Zheng, Y., Li, R., Fei, Z., Ling, K. 2015. Small RNA deep sequencing revealed that mixed infection of known and unknown viruses were common in field collected vegetable samples. American Phytopathological Society Abstracts. P. 516.
Complete genome sequence of an emerging genotype of tobacco streak virus in the U.S. Reprint Icon -
Padmanabhan, C., Gao, S., Li, R., Zhang, S., Fei, Z., Ling, K. 2014. Complete genome sequence of an emerging genotype of tobacco streak virus in the U.S. Genome Announcements. 2(6):e01138-14.
Using small RNA (sRNA) deep sequencing to understand global virus distribution in plants -
Padmanabhan, C., Gao, S., Li, R., Fei, Z., Ling, K. 2014. Using small RNA (sRNA) deep sequencing to understand global virus distribution in plants. Cell Symposia-Regulatory RNAs. Meeting Abstract. P. 22.
Last Modified: 10/16/2017
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