CHARLES V QUIGLEY
(CHUCK)
Soybean Genomics & Improvement Laboratory
Geneticist Plants
Phone: (301) 504-5751
Fax: (301) 504-5728
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
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will take you to the publication reprint.)
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Development and implementation of nested single-nucleotide polymorphism (SNP) assays for breeding and genetic research applications
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Song, Q., Quigley, C.V., He, R., Wang, D., Nguyen, H., Miranda, C., Li, Z. 2024. Development and implementation of nested single-nucleotide polymorphism (SNP) assays for breeding and genetic research applications. The Plant Genome. 17(2). Article e20491. https://doi.org/10.1002/tpg2.20491.
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Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans
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Vuong, T.D., Florez-Palacios, L., Mozzoni, L., Clubb, M., Quigley, C.V., Song, Q., Kamad, S., Yuan, A., Chan, T., Mian, R.M., Nguyen, H. 2023. Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans. The Plant Genome. (16)4. Article e20400. https://doi.org/10.1002/tpg2.20400.
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Genetic variation and genetic complexity of nodule occupancy in soybean inoculated with USDA110 and USDA123 rhizobium strains
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Araya, S., Elia, P.E., Quigley, C.V., Song, Q. 2023. Genetic variation and genetic complexity of nodule occupancy in soybean inoculated with USDA110 and USDA123 rhizobium strains. BMC Genomics. 24. Article e520 (2023). https://doi.org/10.1186/s12864-023-09627-4.
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Recombination hotspots in soybean (Glycine Max (L.) Merr.)
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McConaughy, S., Amundsen, K., Quigley, C.V., Pantalone, V., Hyten, D. 2023. Recombination hotspots in soybean (Glycine Max (L.) Merr.). G3, Genes/Genomes/Genetics. https://doi.org/10.1093/g3journal/jkad075.
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Genotype imputation for soybean nested association mapping population to improve precision of QTL detection
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Chen, L., Yang, S., Araya, S., Quigley, C.V., Taliercio, E.W., Mian, R.M., Specht, J., Diers, B., Song, Q. 2022. Genotype imputation for soybean nested association mapping population to improve precision of QTL detection. Theoretical and Applied Genetics. 135(5), pp.1797-1810. https://doi.org/10.1007/s00122-022-04070-7.
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Identification of quantitative disease resistance Loci towards four Pythium species in soybean
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Clevinger, E., Biyashev, R., Lerch, E., Yu, H., Quigley, C.V., Song, Q., Dorrance, A., Robertson, A., Maroof, S. 2021. Identification of quantitative disease resistance Loci towards four Pythium species in soybean. Frontiers in Plant Science. 12:514. https://doi.org/10.3389/fpls.2021.644746.
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Soybean BARCSoySNP6K - An assay for soybean genetics and breeding research
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Song, Q., Yan, L., Quigley, C.V., Fickus, E.W., Wei, H., Chen, L., Dong, F., Arya, S., Liu, J., Hyten, D., Pantalone, V., Nelson, R.L. 2020. Soybean BARCSoySNP6K - An assay for soybean genetics and breeding research. Plant Journal. https://doi.org/10.1111/tpj.14960.
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Genetic diversity and phylogenetic relationships of annual and perennial Glycine species
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Hwang, E., Schroeder, S.G., Fickus, E.W., Quigley, C.V., Cregan, P., Song, Q. 2019. Genetic diversity and phylogenetic relationships of annual and perennial Glycine species. G3, Genes/Genomes/Genetics. https://doi.org/10.1534/g3.119.400220.
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Fine mapping of genes conferring resistance to rust and anthracnose of common bean
- (Trade Journal)
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Hurtado-Gonzales, O.P., Valentini, G., Gilio, T., Quigley, C.V., Song, Q., Goncalves-Vidigal, M.C., Pastor Corrales, M.A. 2018. Fine mapping of genes conferring resistance to rust and anthracnose of common bean. Bean Improvement Cooperative Annual Report. 61:27-28.
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Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses
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Yan, L., Hofmann, N., Li, S., Ferreira, M., Song, B., Jiang, G., Ren, S., Quigley, C.V., Fickus, E.W., Cregan, P., Song, Q. 2017. Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses. Biomed Central (BMC) Genomics. 18:529. https://doi.org/10.1186/s12864-017-3922-0.
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Genetic characterization of the soybean Nested Association Mapping (NAM) population
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Song, Q., Yan, L., Quigley, C.V., Jordan, B.D., Fickus, E.W., Schroeder, S.G., Song, B., An, Y., Hyten, D., Nelson, R.L., Rainey, K., Beavis, W.D., Specht, J., Diers, B., Cregan, P. 2017. Genetic characterization of the soybean Nested Association Mapping (NAM) population. The Plant Genome. 10(2). doi: 10.3835/plantgenome2016.10.0109.
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Environmental adaptation in wild soybeans (Glycine soja) across their native geographic range in northeast Asia
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Leamy, L.J., Lee, C., Mjuacic, I., Quigley, C.V., Nelson, R.L., Luo, Y., Chen, Y., Peregrine, E.K., Song, B. 2016. Environmental adaptation in wild soybeans (Glycine soja) across their native geographic range in northeast Asia. Ecology and Evolution. 6(17):6332-6344.
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Fingerprinting soybean germplasm and its utility in genomic research
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Song, Q., Hyten, D.L., Jia, G., Quigley, C.V., Fickus, E.W., Nelson, R.L., Cregan, P. 2015. Fingerprinting soybean germplasm and its utility in genomic research. G3, Genes/Genomes/Genetics. 5(9):1-17.
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Development and evaluation of SoySNP50K, a high-density genotyping array for soybean
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Song, Q., Hyten, D., Jia, G., Quigley, C.V., Fickus, E.W., Nelson, R.L., Cregan, P.B. 2013. Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS Genetics. 8(1):e54985.
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High-throughput SNP discovery and assay development in Common Bean
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Hyten, D.L., Song, Q., Fickus, E.W., Choi, I., Quigley, C.V., Hwang, E., Pastor Corrales, M.A., Cregan, P.B. 2010. High-throughput SNP discovery and assay development in Common Bean. Biomed Central (BMC) Genomics. 11:475.
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Single nucleotide polymorphisms in common bean: their discovery and genotyping using a multiplex detection system
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Gaitan-Solis, E., Choi, I., Quigley, C.V., Cregan, P.B., Tohme, J. 2008. Single nucleotide polymorphisms in common bean: their discovery and genotyping using a multiplex detection system. The Plant Genome. 1:125-134.
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A Soybean Transcript Map: Discovery and Mapping of Single Nucleotide Polymorphisms in Soybean Genes
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Choi, I., Hyten, D.L., Matukumalli, L.K., Song, Q., Chaky, J.M., Quigley, C.V., Chase, K., Lark, K.G., Reiter, R.S., Yoon, M., Hwang, E., Yi, S., Young, N.D., Shoemaker, R.C., Van Tassell, C.P., Specht, J.E., Cregan, P.B. 2007. A soybean transcript map: discovery and mapping of single nucleotide polymorphisms in soybean genes. Genetics. 176:685-696.
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MULTIPLEX SNP ANALYSIS TO DETECT SINGLE BASE EXTENSION PRODUCTS
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MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4
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MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4
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Hofmann, N.E., Arelli, P.R., Matthews, B.F., Quigley, C.V., Cregan, P.B. 2002. Molecular beacons to select for scn resistance at rhg1 and rhg4. Biennial Conference on Molecular and Cellular Biology of the Soybean. P. 211.
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SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) IN SOYBEAN: DISCOVERY AND DETECTION.
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SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) IN SOYBEAN GENES, CDNAS, AND RANDOM GENOMIC DNA
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DETECTION OF SINGLE NUCLEOTIDE POLYMORPHISMS USING ION-PAIR REVERSE PHASE CHROMATOGRAPHY.
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MOLECULAR BEACONS AS A TOOL FOR SINGLE NUCLEOTIDE POLYMORPHISM DETECTION
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A SELECTED SCT OF TRINUCLEOTIDE SIMPLE SEQUENCE REPEAT MARKERS FOR SOYBEAN CULTIVAR IDENTIFICATION
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SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) IN SOYBEAN GENES, ESTS, AND RANDOM GENOMIC SEQUENCE
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SOYBEAN CULTIVAR IDENTIFICATION WITH TRINUCLEOTIDE SIMPLE SEQUENCE R EPEAT MARKERS
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ADVANCES IN DNA MARKERS
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A SELECTED SET OF TRINUCLEOTIDE SIMPLE SEQUENCE REPEAT MARKERS FOR SOYBEAN VARIETY IDENTIFICATION
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A DENATURING POLYACRYLAMIDE GEL SYSTEM FOR HIGH THROUGHPUT ANALYSIS OF SIMPLE SEQUENCE REPEAT (SSR) DNA MARKERS
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SIMPLE SEQUENCE REPEAT DNA MARKERS ANALYSIS
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ARS News Articles
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