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United States Department of Agriculture

Agricultural Research Service

Related Topics

Carson Andorf
Corn Insects and Crop Genetics Research
General Biological Science

Phone: (515) 294-2019
Fax: (515) 294-2265

IOWA STATE UNIVERSITY
1575 AGRONOMY BLDG
AMES , IA 50011

Projects
MaizeGDB: Enabling Access to Basic, Translational, and Applied Research Information
Appropriated (D)
  Accession Number: 425036
Development of Maize Sequence Annotation Methods and Pipelines for MaizeGDB
Specific Cooperative Agreement (S)
  Accession Number: 429291
Development of MaizeMine, a Flexible Data Warehouse and Analysis System for Retrieval of Customized Datasets from the MaizeGDB Database
Specific Cooperative Agreement (S)
  Accession Number: 430771

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Sequence, assembly and annotation of the maize W22 genome -
Andorf, C.M., Ahem, K., Bai, F., Barad, O., Barbazuk, B.W., Bass, H.W., Baruch, K., Ben-Zvi, G., Buckler Iv, E.S., Bukowski, R., Davenport, R., Dooner, H.K., He Du, L., Du, C., Easterling, K.A., Gault, C.M., Guan, J., Jander, G., Jiao, Y., Koch, K., Kol, G., Kudo, T., Li, Q., Lu, F., Mayfield-Jones, D., Mei, W., McCarty, D., Portwood II, J.L., Ronen, G., Settles, M.A., Shem-Tov, D., Soifer, I., Springer, N.M., Suzuki, M., Vera, D., Vollbrecht, E., Vrebalov, J.T., Ware, D., Wimalanathan, K., Xiong, W., Brutnell, T. 2016. Sequence, assembly and annotation of the maize W22 genome. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 91.
Investigating diversity and possible functions of G-quadruplexes in regulatory regions of maize genes -
He, M., Andorf, C.M., Walley, J., Walia, H., Koch, K., Liu, P., Bass, H., Lawrence-Dill, C. 2016. Investigating diversity and possible functions of G-quadruplexes in regulatory regions of maize genes. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 85.
Sequencing, assembly, and annotation of Maize B104 : A maize transformation resource -
Manchanda, N., Andorf, C.M., Ye, L., Wimalanathan, K., Rounsley, S., Wang, K., Lawrence-Dill, C. 2016. Sequencing, assembly, and annotation of Maize B104 : A maize transformation resource. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 92.
Maize - GO annotation methods, evaluation, and review (Maize-GAMER) -
Wimalanathan, K., Friedberg, I., Andorf, C.M., Lawrence-Dill, C. 2016. Maize - GO annotation methods, evaluation, and review (Maize-GAMER). In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 87.
New trait data at MaizeGDB -
Schaeffer, M.L., Portwood II, J.L., Gardiner, J.M., Andorf, C.M. 2016. New trait data at MaizeGDB. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 62.
Stewardship of the Maize B73 feference genome assembly -
Cannon, E., Rezaie, T., Dunfee, B., Jiao, Y., Schneider, V., Ware, D., Andorf, C.M. 2016. Stewardship of the Maize B73 feference genome assembly. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 64.
Breeder survey, tools, and resources to visualize diversity and pedigree relationships at MaizeGDB -
Sen, T.Z., Braun, B.L., Schott, D.A., Portwood II, J.L., Schaeffer, M.L., Harper, E.C., Gardiner, J.M., Cannon, E.K., Andorf, C.M. 2016. Breeder survey, tools, and resources to visualize diversity and pedigree relationships at MaizeGDB. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 63.
MaizeGDB video tutorials, feedback booth and introducing the agBioData working group -
Harper, E.C., Enger, A., Schaeffer, M.L., Gardiner, J.M., Braun, B., Cannon, E., Portwood II, J.L., Sen, T.Z., Andorf, C.M. 2016. MaizeGDB video tutorials, feedback booth and introducing the agBioData working group. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 63.
MaizeGDB: New tools and resource -
Portwood II, J.L., Cannon, E., Braun, B., Harper, E.C., Gardiner, J.M., Schaeffer, M.L., Brumfield, M., Cho, K., Dunfee, B., Schott, D., Sen, T.Z., Andorf, C.M. 2016. MaizeGDB: New tools and resource. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 62.
MaizeGDB update: New tools, data, and interface for the maize model organism database -
Andorf, C.M., Cannon, E., Portwood II, J.L., Gardiner, J.M., Harper, E.C., Schaeffer, M.L., Braun, B.L., Campbell, D.A., Vinnakota, A.G., Sribalusa, V.V., Huerta, M., Cho, K., Wimalanathan, K., Richter, J.D., Mauch, E.D., Rao, B.S., Birkett, S.M., Sen, T.Z., Lawrence, C.J. 2016. MaizeGDB update: New tools, data, and interface for the maize model organism database. Nucleic Acids Research. 44 (D1):D1195-201. doi:10.1093/nar/gkv1007.
MaizeGDB: The Maize Genetics and Genomics Database. -
Harper, E.C., Gardiner, J., Andorf, C.M., Lawrence, C.J. 2016. MaizeGDB: The Maize Genetics and Genomics Database. In: Edwards, D. Plant Bioinformatics, Methods and Protocols. 2nd Edition. New York, NY: Humana Press. p.187-202.
G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation -
Andorf, C.M., Kopylov, M., Dobbs, D., Koch, K., Stroupe, M., Lawrence, C.J., Bass, H. 2014. G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation. Journal of Genetics and Genomics. 41(12):627-647. DOI: 10.1016/j.jgg.2014.10.004.
MaizeGDB: everything old is new again! [abstract] Reprint Icon -
Andorf, C.M., Cannon, E., Portwood, J., Braun, B.L., Harper, E.C., Campbell, D.A., Schaeffer, M.L., Richter, J., Sen, T.Z., Lawrence, C.J. 2013. MaizeGDB: everything old is new again! [abstract]. In: Maize Genetics Conference, St. Charles, IL. Mar. 14-17, 2013. p. 55.
Compare Identity By Sequence Relationships of the Ames Diversity Panel using TYPSimSelector [abstract] Reprint Icon -
Mauch, E., Andorf, C.M., Millard, M.J., Romay, C., Buckler Iv, E.S., Gardner, C.A., Lawrence, C.J. 2013. Compare Identity By Sequence Relationships of the Ames Diversity Panel using TYPSimSelector [abstract]. In: Maize Genetics Conference, St. Charles, IL. Mar. 14-17, 2013. p. 55.
Metabolic pathway resources at MaizeGDB -
Sen, T.Z., Monaco, M., Chae, L., Dharmawardhana, P., Schaeffer, M.L., Dreher, K., Zhang, P., Naithani, S., Thomason, J., Harper, E.C., Gardiner, J., Cannon, E., Andorf, C.M., Campbell, D.A., Rhee, S.Y., Ware, D., Jaiswal, P., Lawrence, C.J. 2013. Metabolic pathway resources at MaizeGDB [abstract]. In: Proceedings of Maize Genetics Conference, March 14-17, St. Charles, Illinois. p. 3.
MaizeGDB: enabling access to basic, translational, and applied research information -
Lawrence, C.J., Andorf, C.M., Birkett, S., Braun, B.L., Campbell, D.A., Cannon, E., Gardiner, J., Harper, E.C., Portwood, J., Richter, J., Schaeffer, M.L., Sen, T.Z., Wimalanathan, K. 2012. MaizeGDB: enabling access to basic, translational, and applied research information. Meeting Proceedings. P. 233.
POPcorn: An online resource providing access to distributed and diverse maize project data Reprint Icon -
Cannon, E.K., Birkett, S.M., Braun, B.L., Kodavali, S., Jennewein, D.M., Yilmaz, A., Antonescu, V., Antonescu, C., Harper, E.C., Gardiner, J.M., Schaeffer, M.L., Campbell, D.A., Andorf, C.M., Andorf, D., Lisch, D., Koch, K.K., McCarty, D.R., Quackenbush, J., Grotewold, E., Lushbough, C.M., Sen, T.Z., Lawrence, C.J. 2011. POPcorn: An online resource providing access to distributed and diverse maize project data. International Journal of Plant Genomics. 2011:Article 923035. Available http://www.hindawi.com/journals/ijpg/2011/923035.
MaizeGDB, the maize model organism database -
Lawrence, C.J., Andorf, D., Andorf, C.M., Birkett, S.M., Braun, B.L., Cannon, E., Campbell, D.A., Gardiner, J.M., Harper, E.C., Rao, B., Schaeffer, M.L., Sen, T.Z. 2011. MaizeGDB, the maize model organism database. Meeting Abstract. P. 1.
MaizeGDB: Curation and outreach go hand-in-hand -
Schaeffer, M.L., Harper, E.C., Gardiner, J.M., Andorf, C.M., Campbell, D.A., Cannon, E.K., Sen, T.Z., Lawrence, C.J. 2011. MaizeGDB: Curation and outreach go hand-in-hand. Database: The Journal of Biological Databases and Curation. 2011:Article bar022. Available: http://database.oxfordjournals.org/content/2011/bar022.long.
The MaizeGDB Genome Browser Tutorial: One example of database outreach to biologists via video -
Harper, E.C., Schaeffer, M.L., Thistle, J., Gardiner, J., Andorf, C.M., Campbell, D.A., Cannon, E.K., Braun, B.L., Birkett, S., Lawrence, C.J., Sen, T.Z. 2011. The MaizeGDB Genome Browser Tutorial: One example of database outreach to biologists via video. Database: The Journal of Biological Databases and Curation. DOI: 10.1093/database/bar016:1.
Reinventing MaizeGDB -
Andorf, C.M., Cannon, E.K., Braun, B.L., Birkett, S., Harper, E.C., Schaeffer, M.L., Gardiner, J., Jayasingam, D., Campbell, D.A., Sen, T.Z., Lawrence, C.J. 2011. Reinventing MaizeGDB. 53rd Annual Maize Genetics Conference Program and Abstracts. 1(1):33.
MAIZEGDB.ORG, the Maize Genetics Cooperation and the 2500 MB B73 Genome-Generated Tsunami -
Choosing a Genome Browser for a Model Organism Database (MOD): Surveying the Maize Community -
Sen, T.Z., Harper, E.C., Schaeffer, M.L., Andorf, C.M., Seigfried, T.E., Campbell, D.A., Lawrence, C.J. 2010. Choosing a Genome Browser for a Model Organism Database (MOD): Surveying the Maize Community. Database: The Journal of Biological Databases and Curation. doi: 10.1093/database/baq007. p. 1.
Sequence Resources at MaizeGDB with Emphasis on POPcorn: A Project Portal for Corn -
Lawrence, C.J., Cannon, E.K., Andorf, C.M., Campbell, D.A., Harper, E.C., Schaeffer, M.L., Sen, T.Z. 2010. Sequence Resources at MaizeGDB with Emphasis on POPcorn: A Project Portal for Corn [abstract]. 52nd Maize Genetics Conference Proceedings. p. 32.
The Locus Lookup Tool at MaizeGDB: Identification of Genomic Regions in Maize by Integrating Sequence Information with Physical and Genetic Maps -
Andorf, C.M., Lawrence, C.J., Harper, E.C., Schaeffer, M.L., Campbell, D.A., Sen, T.Z. 2010. The Locus Lookup Tool at MaizeGDB: Identification of Genomic Regions in Maize by Integrating Sequence Information with Physical and Genetic Maps. Bioinformatics. 26(3):434-436.
MaizeGDB Becomes Sequence-centric -
Sen, T.Z., Andorf, C.M., Schaeffer, M.L., Harper, E.C., Sparks, M., Duvick, J., Brendel, V., Cannon, E., Campbell, D.A., Lawrence, C.J. 2009. MaizeGDB Becomes Sequence-centric. Database: The Journal of Biological Databases and Curation. doi: 10.1093/database/bap020. p. 1.
The MaizeGDB Genome Browser -
Sen, T.Z., Andorf, C.M., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2009. The MaizeGDB Genome Browser [abstract]. Maize Genetics Conference Abstracts. p. 28.
The MaizeGDB Genome Browser -
Sen, T.Z., Andorf, C.M., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2009. The MaizeGDB Genome Browser [abstract]. Plant and Animal Genome Conference Proceedings. p. 1.
Last Modified: 5/2/2016
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