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United States Department of Agriculture

Agricultural Research Service

Related Topics

Danny J Nonneman (Dan)
Reproduction Research
General Biological Science

Phone: (402) 762-4367
Fax: (402) 762-4390

U.S. MEAT ANIMAL RESEARCH CENTER
STATE SPUR 18D
CLAY CENTER , NE 689330000

Projects
Genetic and Genomic Approaches to Improve Swine Reproductive Efficiency
Appropriated (D)
  Accession Number: 426415

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
A GWAS of teat number in pigs -
Rohrer, G.A., Nonneman, D.J. 2016. A GWAS of teat number in pigs [abstract]. International Society for Animal Genetics (35th ISAG). Abstract Book. p. 131-132 (Abstract # P5033).
Expression of the putative gonadotropin-inhibitory hormone receptor, NPFFR1, in the anterior pituitary gland of the gilt is affected by age and sexual maturation -
Lents, C.A., Thorson, J.F., Nonneman, D.J. 2016. Expression of the putative gonadotropin-inhibitory hormone receptor, NPFFR1, in the anterior pituitary gland of the gilt is affected by age and sexual maturation [abstract]. Journal of Animal Science Supplement. 94 (E-Supplement 5):527 (Abstract # 1120).
Genome-wide association and identification of candidate genes for age at puberty in swine Reprint Icon -
Nonneman, D.J., Schneider, J.F., Lents, C.A., Wiedmann, R.T., Vallet, J.L., Rohrer, G.A. 2016. Genome-wide association and identification of candidate genes for age at puberty in swine. BMC Genetics. 17(1):50.
Effects of neonatal litter size and age on ovarian gene expression and follicular development in gilts -
McClure, M.W., Cushman, R.A., Nonneman, D.J., Lents, C.A. 2016. Effects of neonatal litter size and age on ovarian gene expression and follicular development in gilts [abstract]. Journal of Animal Science. 94(Supplement 2):184 (Abstract #403).
Potential functional variants associated with age at puberty in a validation population of swine -
Nonneman, D.J., Lents, C.A., Kalbfleisch, T.S., Vallet, J.L., Rohrer, G.A. 2016. Potential functional variants associated with age at puberty in a validation population of swine [abstract]. Plant and Animal Genome Conference Proceedings. XXIV Conference:Abstract #P0619.
Investigation and validation of the role of a QTL on SSC12 in PCV2b viremia -
Tosky, E., Smith, T.P.L., Engle, T., Davis, E., Moural, T., Nonneman, D., Chin, J., Burkey, T., Plastow, G.S., Kachman, S.D., Ciobanu, D.C. 2016. Investigation and validation of the role of a QTL on SSC12 in PCV2b viremia [abstract]. Plant and Animal Genome XXIV Conference Proceedings. Abstract #P0638.
Do you really know where this SNP goes? -
Rohrer, G.A., Nonneman, D., Schroeder, S.G., Chin, J., Koren, S., Phillippy, A., Green, R., Putnam, N., Smith, T.P.L. 2016. Do you really know where this SNP goes? [abstract] Plant and Animal Genome XXIV Conference Proceedings. Abstract #W909.
Development of resources and tools for mapping genetic sources of phenotypic variation -
Ciobanu, D.C., Tosky, E., Olson, S., Trenhaile, M., Lents, C.A., Smith, T.P.L., Nonneman, D., Rohrer, G.A., Chin, J., Miller, P.S., Burkey, T., Spangler, M.L., Riethoven, J.-J., Plastow, G.S., Kachman, S.D. 2016. Development of resources and tools for mapping genetic sources of phenotypic variation [abstract]. Plant and Animal Genome XXIV Conference Proceedings. Abstract #W914.
Litter-of-origin trait effects on gilt development Reprint Icon -
Vallet, J.L., Calderón-Díaz, J.A., Stalder, K.J., Phillips, C., Cushman, R.A., Miles, J.R., Rempel, L.A., Rohrer, G.A., Lents, C.A., Freking, B.A., Nonneman, D.J. 2016. Litter-of-origin trait effects on gilt development. Journal of Animal Science. 94(1):96-105.
A study of vertebra number in pigs confirms the association of vertnin and reveals additional QTL Reprint Icon -
Rohrer, G.A., Nonneman, D.J., Wiedmann, R.T., Schneider, J.F. 2015. A study of vertebra number in pigs confirms the association of vertnin and reveals additional QTL. BMC Genetics. 16(1):129.
Implementing meta-analysis from genome-wide association studies for pork quality traits Reprint Icon -
Bernal Rubio, Y.L., Gualdrón Duarte, J.L., Bates, R.O., Ernst, C.W., Nonneman, D., Rohrer, G.A., King, D.A., Shackelford, S.D., Wheeler, T.L., Cantet, R.J.C., Steibel, J.P. 2015. Implementing meta-analysis from genome-wide association studies for pork quality traits. Journal of Animal Science. 93(12):5607-5617.
Meta-analysis of genome-wide association from genomic prediction models Reprint Icon -
Bernal Rubio, Y.L., Gualdrón Duarte, J.L., Bates, R.O., Ernst, C.W., Nonneman, D., Rohrer, G.A., King, A., Shackelford, S.D., Wheeler, T.L., Cantet, R.J.C., Steibel, J.P. 2016. Meta-analysis of genome-wide association from genomic prediction models. Animal Genetics. 47(1):36-48.
Potential contribution of genomics and biotechnology in animal production -
Casas, E., Montaldo, H.H., Nonneman, D.J., Poli, M.A. 2015. Potential contribution of genomics and biotechnology in animal production. In: Dominguez, R.N., Valverde, R.R., Rivera, S.F., Febres, O.A., Winder, M.G., Munoz T.E., editors. Livestock in Latin America and the Caribbean: Alternatives for the sustainable, inclusive and competitive production of animal-derived foods. 1st edition. Guadalajara, Mexico: Printing Arts Mexico. p. 761-788.
Genome-wide copy number variations using SNP genotyping in a mixed breed swine population Reprint Icon -
Wiedmann, R.T., Nonneman, D.J., Rohrer, G.A. 2015. Genome-wide copy number variations using SNP genotyping in a mixed breed swine population. PLoS One. 10(7):e0133529. DOI: 10.1371/journal.pone.0133529.
Measurements of body composition during late gestation and lactation in first and second parity sows and its relationship to piglet production and post-weaning reproductive performance Reprint Icon -
Rempel, L.A., Vallet, J.L., Lents, C.A., Nonneman, D.J. 2015. Measurements of body composition during late gestation and lactation in first and second parity sows and its relationship to piglet production and post-weaning reproductive performance. Livestock Science. 178:289-295.
Porcine models of muscular dystrophy Reprint Icon -
Selsby, J.T., Ross, J.W., Nonneman, D., Hollinger, K. 2015. Porcine models of muscular dystrophy. ILAR Journal. 56(1):116-126.
Age at puberty, ovulation rate, and uterine length of developing gilts fed two lysine and three metabolizable energy concentrations from 100 to 260 d of age Reprint Icon -
Calderón Díaz, J.A., Vallet, J.L., Lents, C.A., Nonneman, D.J., Miles, J.R., Wright, E.C., Rempel, L.A., Cushman, R.A., Freking, B.A., Rohrer, G.A., Phillips, C., Dedecker, A., Foxcroft, G., Stalder, K.J. 2015. Age at puberty, ovulation rate, and uterine length of developing gilts fed two lysine and three metabolizable energy concentrations from 100 to 260 d of age. Journal of Animal Science. 93(7):3521-3527.
Age at puberty, ovulation rate, and reproductive tract traits of developing gilts fed two lysine levels and three metabolizable energy levels from 100 to 260 d of age -
Calderon Diaz, J.A., Vallet, J.L., Lents, C.A., Nonneman, D., Miles, J.R., Wright-Johnson, E.C., Rempel, L.A., Cushman, R.A., Freking, B.A., Rohrer, G.A., Phillips, C.E., DeDecker, A.E., Foxcroft, G., Stalder, K. 2015. Age at puberty, ovulation rate, and reproductive tract traits of developing gilts fed two lysine levels and three metabolizable energy levels from 100 to 260 d of age [abstract]. Journal of Animal Science. 93(Supplement 2):81 (Abstract #180).
Relationships between day one piglet serum immunoglobulin immunocrit and subsequent growth, puberty attainment, litter size, and lactation performance Reprint Icon -
Vallet, J.L., Miles, J.R., Rempel, L.A., Nonneman, D.J., Lents, C.A. 2015. Relationships between day one piglet serum immunoglobulin immunocrit and subsequent growth, puberty attainment, litter size, and lactation performance. Journal of Animal Science. 93(6):2722-2729.
Litter of origin effects on gilt development in a commercial setting -
Vallet, J.L., Calderon-Diaz, J.A., Stalder, K.J., Phillips, C.E., Miles, J.R., Wright-Johnson, E.C., Rempel, L.A., Lents, C.A., Nonneman, D., Rohrer, G.A., Freking, B.A., Cushman, R.A. 2015. Litter of origin effects on gilt development in a commercial setting [abstract]. Journal of Animal Science. 93(Supplement 2):79-80 (Abstract #177).
Research on gilt first estrus and pubertal development at USMARC -
Nonneman, D., Lents, C.A., Schneider, J.F., Vallet, J.L., Rohrer, G.A. 2015. Research on gilt first estrus and pubertal development at USMARC [abstract]. Plant and Animal Genome XXIII Conference Proceedings. Abstract #W827.
A study of vertebra number in pigs confirms the effect of vertnin and reveals additional QTL -
Rohrer, G.A., Nonneman, D., Schneider, J.F. 2015. A study of vertebra number in pigs confirms the effect of vertnin and reveals additional QTL [abstract]. Plant and Animal Genome XXIII Conference Proceedings. Abstract #P0370.
Implementing Meta-analysis for genome-wide association studies of pork quality traits -
Bernal Rubio, Y.L., Gualdrón Duarte, J.L., Bates, R.O., Ernst, C.W., Nonneman, D., Rohrer, G.A., King, A., Shackelford, S.D., Wheeler, T.L., Cantet, R.J.C., Steibel, J.P. 2014. Implementing Meta-analysis for genome-wide association studies of pork quality traits [abstract]. Revista Argentina de Producción Animal. 34 (Supplement 1):82 (Abstract # GM 6).
Methods for meta-analysis of genome-wide association studies -
Bernal Rubio, Y.L., Gualdrón Duarte, J.L., Bates, R.O., Ernst, C.W., Nonneman, D., Rohrer, G.A., King, A., Shackelford, S.D., Wheeler, T.L., Cantet, R.J.C., Steibel, J.P. 2014. Methods for meta-analysis of Genome-wide association studies [abstract]. Revista Argentina de Producción Animal. 34 (Supplement 1):83 (Abstract # GM 7).
Meta-analysis of genome wide association studies for pork quality traits -
Bernal Rubio, Y.L., Gualdrón Duarte, J.L., Bates, R.O., Ernst, C.W., Nonneman, D., Rohrer, G.A., King, A., Shackelford, S.D., Wheeler, T.L., Canter, R.J.C., Steibel, J.P. 2014. Meta-analysis of genome wide association studies for pork quality traits. In: Proceedings of 10th World Congress of Genetics Applied to Livestock Production, August 17-22, 2014, Vancouver, British Columbia, Canada. 3 pp.
Optimal dietary energy and protein for the development of gilts - NPB #12-209 -
Vallet, J., Calderon, J., Stalder, K., Phillips, C., Bradley, G., Miles, J., Rempel, L., Lents, C., Freking, B., Rohrer, G., Nonneman, D., Cushman, R. 2014. Optimal dietary energy and protein for the development of gilts - NPB #12-209. National Pork Board. Available: http://research.pork.org/FileLibrary/ResearchDocuments/12-209-Vallet-USDA.pdf.
Genomewide association and identification of candidate genes for ovulation rate in swine Reprint Icon -
Schneider, J.F., Nonneman, D.J., Wiedmann, R.T., Vallet, J.L., Rohrer, G.A. 2014. Genomewide association and identification of candidate genes for ovulation rate in swine. Journal of Animal Science. 92(9):3792-3803.
Dystrophin deficiency-induced changes in porcine skeletal muscle -
Nonneman, D., Rohrer, G., Ross, J.W., Hollinger, K., Selsby, J.T. 2014. Dystrophin deficiency-induced changes in porcine skeletal muscle. Proceedings of American Meat Science Association 67th Annual Reciprocal Meat Conference, June 15-18, 2014, Madison, Wisconsin. 4 pp. http://www.meatscience.org/publications-resources/rmc-proceedings
Development of rabbit monoclonal antibodies for detection of alpha-dystroglycan in normal and dystrophic tissue Reprint Icon -
Fortunato, M.J., Ball, C.E., Hollinger, K., Patel, N.B., Modi, J.N., Rajasekaran, V., Nonneman, D.J., Ross, J.W., Kennedy, E.J., Selsby, J.T., Beedle, A.M. 2014. Development of rabbit monoclonal antibodies for detection of alpha-dystroglycan in normal and dystrophic tissue. PLoS One. 9(5):e97567.
Meta-analysis genomewide association of pork quality traits: ultimate pH and shear force -
Bernal Rubio, Y.L., Gualdron Duarte, J.L., Bates, R.0., Ernst, C.W., Nonneman, D., Rohrer, G.A., King, A., Shackelford, S.D., Wheeler, T.L., Cantet, R.J.C., Steibel, J.P. 2014. Meta-analysis genomewide association of pork quality traits: ultimate pH and shear force [abstract]. Journal of Animal Science. 92(Supplement 2):11-12 (Abstract #26).
Dystrophin insufficiency causes selective muscle histopathology and loss of dystrophin-glycoprotein complex assembly in pig skeletal muscle Reprint Icon -
Hollinger, K., Yang, C.X., Montz, R.E., Nonneman, D., Ross, J.W., Selsby, J.T. 2014. Dystrophin insufficiency causes selective muscle histopathology and loss of dystrophin-glycoprotein complex assembly in pig skeletal muscle. Journal of Federation of American Societies for Experimental Biology. 28(4):1600-1609.
Validation of QTL in commercial-type pigs at USMARC -
Rohrer, G.A., Wiedmann, R.T., Schneider, J.F., Nonneman, D. 2014. Validation of QTL in commercial-type pigs at USMARC [abstract]. Plant and Animal Genome XXII Conference Proceedings. Abstract #W795.
Dissection of two QTL on SSC2 identifies candidate genes for ovulation rate in swine -
Nonneman, D., Schneider, J.F., Wiedmann, R.T., Vallet, J.L., Rohrer, G.A. 2014. Dissection of two QTL on SSC2 identifies candidate genes for ovulation rate in swine [abstract]. Plant and Animal Genome XXII Conference Proceedings. Abstract #P596.
Discovery of 14.6 million SNP in a mixed breed swine population -
Wiedmann, R.T., Nonneman, D., Rohrer, G.A. 2014. Discovery of 14.6 million SNP in a mixed breed swine population [abstract]. Plant and Animal Genome XXII Conference Proceedings. Abstract #P584.
Genome-wide association with delayed puberty in swine Reprint Icon -
Nonneman, D., Lents, C., Rohrer, G., Rempel, L., Vallet, J. 2014. Genome-wide association with delayed puberty in swine. Animal Genetics. 45(1):130-132.
Effects of nesfatin-1 on food intake and LH secretion in prepubertal gilts and genomic association of the porcine NUCB2 gene with growth traits Reprint Icon -
Lents, C.A., Barb, C.R., Hausman, G.J., Nonneman, D., Heidorn, N.L., Cisse, R.S., Azain, M.J. 2013. Effects of nesfatin-1 on food intake and LH secretion in prepubertal gilts and genomic association of the porcine NUCB2 gene with growth traits. Domestic Animal Endocrinology. 45(2):89-97.
Incorporation of genetic technologies associated with applied reproductive technologies to enhance world food production -
Cushman, R.A., McDaneld, T.G., Kuehn, L.A., Snelling, W.M., Nonneman, D. 2014. Incorporation of genetic technologies associated with applied reproductive technologies to enhance world food production. In: Lamb, G.C., DiLorenzo, N., editors. Current and Future Reproduction Technologies and World Food Production. Advances in Experimental Medicine and Biology. New York, NY: Springer. p. 77-96. DOI: 10.1007/978-1-4614-8887-3.
Genome-wide association of meat quality traits and tenderness in swine Reprint Icon -
Nonneman, D.J., Shackelford, S.D., King, D.A., Wheeler, T.L., Wiedmann, R.T., Snelling, W.M., Rohrer, G.A. 2013. Genome-wide association of meat quality traits and tenderness in swine. Journal of Animal Science. 91(9):4043-4050.
Characterization of a novel porcine stress syndrome -
Rohrer, G.A., Brown-Brandl, T.M., Nonneman, D.J. 2014. Characterization of a novel porcine stress syndrome [PowerPoint]. In Proceedings: National Swine Improvement Federation Conference and Annual Meeting, December 1-2, 2011, Lincoln, Nebraska. NSIF Volume 36. Available: http://www.nsif.com/Conferences/2011/pdf/Characterization%20of%20a%20novel%20porcine%20stress%20syndrome.pdf
Dystrophin insufficiency causes a Becker muscular dystrophy-like phenotype in swine -
Hollinger, K., Yang, C.-X., Ross, J.W., Rohrer, G.A., Nonneman, D., Selsby, J.T. 2013. Dystrophin insufficiency causes a Becker muscular dystrophy-like phenotype in swine [abstract]. Journal of Federation of American Societies for Experimental Biology. 27:1147.6.
The relationship of plasma urea nitrogen with growth traits and age at first estrus in gilts Reprint Icon -
Lents, C.A., Rempel, L.A., Klindt, J., Wise, T., Nonneman, D., Freking, B.A. 2013. The relationship of plasma urea nitrogen with growth traits and age at first estrus in gilts. Journal of Animal Science. 91(7):3137-3142.
Relationships of birth weight traits with age at first estrus and number of ovulations in Landrace-Duroc-Yorkshire gilts -
Lents, C.A., Rempel, L.A., Wise, T., Nonneman, D. 2013. Relationships of birth weight traits with age at first estrus and number of ovulations in Landrace-Duroc-Yorkshire gilts. Journal of Animal Science. 91 (E-Supplement 2):591 (Abstract #TH339).
Abundance of total genomic 5-methylcytosine and 5-hydroxymethylcytosine in different pig tissues -
Freking, B.A., Nonneman, D.J. 2013. Abundance of total genomic 5-methylcytosine and 5-hydroxymethylcytosine in different pig tissues. Journal of Animal Science. 91 (E-Supplement 2):537 (Abstract #TH185).
Identification of an ionotropic glutamate receptor AMPA1/GRIA1 polymorphism in crossbred beef cows differing in fertility Reprint Icon -
Cushman, R.A., Miles, J.R., Rempel, L.A., McDaneld, T.G., Kuehn, L.A., Chitko-McKown, C.G., Nonneman, D., Echternkamp, S.E. 2013. Identification of an ionotropic glutamate receptor AMPA1/GRIA1 polymorphism in crossbred beef cows differing in fertility. Journal of Animal Science. 91(6):2640-2646.
Differences in X-chromosome transcriptional activity and cholesterol metabolism between placentae from swine breeds from asian and western origins Reprint Icon -
Bischoff, S.R., Tsai, S.Q., Hardison, N.E., Motsinger-Reif, A.A., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J.A. 2013. Differences in X-chromosome transcriptional activity and cholesterol metabolism between placentae from swine breeds from Asian and Western origins. PLoS One. 8(1):e55345.
Genome-wide association identifies candidate genes for ovulation rate in swine -
Nonneman, D., Schneider, J., Wiedmann, R., Vallet, J., Rohrer, G. 2013. Genome-wide association identifies candidate genes for ovulation rate in swine [abstract]. Journal of Animal Science. 91 (Supplement 2):64 (Abstract #O191).
Use of single nucleotide polymorphisms (SNP) to fine-map quantitative trait loci (QTL) in swine -
Rohrer, G.A., Lindholm-Perry, A.K., Shackelford, S.D., King, D.A., Wheeler, T.L., Nonneman, D. 2013. Use of single nucleotide polymorphisms (SNP) to fine-map quantitative trait loci (QTL) in swine [abstract]. Plant and Animal Genome XXI Conference Proceedings. Abstract #W047.
Genome-wide association of porcine lung lesions using DNA pooling -
Nonneman, D., Jones, S.A., Shackelford, S.D., Keele, J.W. 2013. Genome-wide association of porcine lung lesions using DNA pooling [abstract]. Plant and Animal Genome XXI Conference Proceedings. Abstract #P0594.
A defect in dystrophin causes a novel porcine stress syndrome Reprint Icon -
Nonneman, D.J., Brown-Brandl, T., Jones, S.A., Wiedmann, R.T., Rohrer, G.A. 2012. A defect in dystrophin causes a novel porcine stress syndrome. Biomed Central (BMC) Genomics. 13:233.
Association of single nucleotide polymorphism (SNP) markers in candidate genes and QTL regions with pork quality traits in commercial pigs Reprint Icon -
Rohrer, G.A., Nonneman, D.J., Miller, R.K., Zerby, H., Moeller, S.J. 2012. Association of single nucleotide polymorphism (SNP) markers in candidate genes and QTL regions with pork quality traits in commercial pigs. Meat Science. 92(4):511-518.
Genome-wide association study of swine farrowing traits. Part II: Bayesian analysis of marker data Reprint Icon -
Schneider, J.F., Rempel, L.A., Snelling, W.M., Wiedmann, R.T., Nonneman, D.J., Rohrer, G.A. 2012. Genome-wide association study of swine farrowing traits. Part II: Bayesian analysis of marker data. Journal of Animal Science. 90(10):3360-3367.
Genome wide association study of age at puberty in swine -
Schneider, J.F., Nonneman, D.J., Wiedmann, R.T., Rohrer, G.A. 2012. Genome-wide association study of age at puberty in swine [abstract]. Journal of Animal Science. 90 (Supplement 3):19 (Abstract #M41).
Analysis of copy number variations among cattle breeds -
Liu, G., Hou, Y., Zhu, B., Cardone, M.F., Jiang, L., Cellamare, A., Mitra, A., Alexander, L.J., Coutinho, L.L., Gasbarre, L.C., Li, R.W., Matukumalli, L.K., Nonneman, D.J., Regitano, L.C., Smith, T.P., Song, J., Sonstegard, T.S., Van Tassell, C.P., Ventura, M., Eichler, E.E., Mcdaneld, T.G., Keele, J.W. 2012. Analysis of copy number variations among cattle breeds. [abstract] CONFERENCE ON THE BIOLOGY OF GENOMES. P. 182.
Genome-wide association of a novel porcine stress-syndrome to dystrophin -
Nonneman, D., Brown Brandl, T., Jones, S.A., Wiedmann, R.T., Rohrer, G.A. 2012. Genome-wide association of a novel porcine stress-syndrome to dystrophin [abstract]. Plant and Animal Genome XX Conference Proceedings. Abstract #W696.
Polymorphism within thyroid hormone responsive (THRSP) associated with weaning-to-oestrus interval in swine Reprint Icon -
Rempel, L.A., Nonneman, D.J., Rohrer, G.A. 2012. Polymorphism within thyroid hormone responsive (THRSP) associated with weaning-to-oestrus interval in swine. Animal Genetics. 43(3):364-365.
Current genetic technologies to improve efficiency of livestock production -
Nonneman, D.J., Rohrer, G.A., Rempel, L.A., Lents, C.A., Vallet, J.L. 2011. Current genetic technologies to improve efficiency of livestock production [abstract]. Biology of Reproduction. 85 (1 Supplement):83 (Abstract # 107).
Identification of genomic regions associated with cryptorchidism in pigs -
Rohrer, G.A., Nonneman, D.J., Wiedmann, R.T. 2011. Identification of genomic regions associated with cryptorchidism in pigs. Proc., Swine in Biomedical Research Conference. p. 37-38.
Four genes located on a SSC2 meat quality QTL region are associated with different meat quality traits in Landrace x Chinese-European crossbred population Reprint Icon -
Cepica, S., Ovilo, C., Masopust, M., Knoll, A., Fernandez, A., Lopez, A., Rohrer, G.A., Nonneman, D. 2012. Four genes located on a SSC2 meat quality QTL region are associated with different meat quality traits in Landrace x Chinese-European crossbred population. Animal Genetics. 43(3):333-336.
Association of porcine heparanase and hyaluronidase 1 and 2 with reproductive and production traits in a Landrace-Duroc-Yorkshire population Reprint Icon -
Rempel, L.A., Freking, B.A., Miles, J.R., Nonneman, D.J., Rohrer, G.A., Schneider, J.F., Vallet, J.L. 2011. Association of porcine heparanase and hyaluronidase 1 and 2 with reproductive and production traits in a Landrace-Duroc-Yorkshire population. Frontiers in Livestock Genomics. 2:20.
Validation and fine mapping of a QTL for ovulation rate on swine chromosome 3 Reprint Icon -
Mousel, M.R., Leymaster, K.A., Christenson, R.K., Nonneman, D.J., Rohrer, G.A. 2012. Validation and fine mapping of a QTL for ovulation rate on swine chromosome 3. Animal Genetics. 43(2):220-224.
Predictive markers in calpastatin for tenderness in commercial pig populations Reprint Icon -
Nonneman, D.J., Lindholm-Perry, A.K., Shackelford, S.D., King, D.A., Wheeler, T.L., Rohrer, G.A., Bierman, C.D., Schneider, J.F., Miller, R.K., Zerby, H., Moeller, S.J. 2011. Predictive markers in calpastatin for tenderness in commercial pig populations. Journal of Animal Science. 89:2663-2672.
Genomic regions associated with kyphosis in swine Reprint Icon -
Lindholm-Perry, A.K., Rohrer, G.A., Kuehn, L.A., Keele, J.W., Holl, J.W., Shackelford, S.D., Wheeler, T.L., Nonneman, D.J. 2010. Genomic regions associated with kyphosis in swine. BMC Genetics. 11:112.
Genome-wide associations for age at puberty in a Duroc-Landrace-Yorkshire swine population -
Nonneman, D.J., Rohrer, G.A., Rempel, L.A., Wiedmann, R.T., Vallet, J.L. 2011. Genome-wide associations for age at puberty in a Duroc-Landrace-Yorkshire swine population. Plant and Animal Genome Conference Proceedings. Poster #P609.
QTL associations for weaning-to-estrus interval in a Landrace-Duroc-Yorkshire swine population -
Rempel, L.A., Wiedmann, R.T., Nonneman, D.J., Rohrer, G.A. 2011. QTL associations for weaning-to-estrus interval in a Landrace-Duroc-Yorkshire swine population [abstract]. Plant and Animal Genome Conference Proceedings. (XIX Conference):Abstract P607.
Genome-wide association of a novel porcine stress-syndrome and isoflurane sensitivity to dystrophin -
Nonneman, D.J., Brown Brandl, T.M., Jones, S., Rohrer, G.A. 2010. Genome-wide association of a novel porcine stress-syndrome and isoflurane sensitivity to dystrophin. Journal of Animal Science. 88(ESuppl. 2):II Abstract #LB5.
Molecular cloning of porcine chemokine CXC motif ligand 2 (CXCL2) and mapping to the SSC8 -
Kim, J.G., Rohrer, G.A., Nonneman, D., Vallet, J.L. 2010. Molecular cloning of porcine chemokine CXC motif ligand 2 (CXCL2) and mapping to the SSC8 [abstract]. Biology of Reproduction. 83 (Special Issue):79 (Abstract # 351).
Metabolic Measurements in the Sow and Relationship to Post-Weaning Reproductive Performance -
Rempel, L.A., Vallet, J.L., Nonneman, D.J. 2010. Metabolic Measurements in the Sow and Relationship to Post-Weaning Reproductive Performance [abstract]. Journal of Animal Science. 88 (E-Supplement 2):112-113. (Abstract #M293).
Analysis of copy number variations reveals differences among cattle breeds Reprint Icon -
Liu, G., Hou, Y., Zhu, B., Cardone, M.F., Jiang, L., Cellamare, A., Mitra, A., Alexander, L.J., Coutinho, L.L., Gasbarre, L.C., Heaton, M.P., Li, R.W., Matukumalli, L.K., Nonneman, D.J., De A Regitano, L.C., Smith, T.P., Song, J., Sonstegard, T.S., Van Tassell, C.P., Eichler, E.E., Mcdaneld, T.G., Keele, J.W. 2010. Analysis of copy number variations among cattle breeds. Genome Research. 20:693-703.
Association of Allelic Variants of Thyroid-Binding Globulin With Puberty in Boars and Responses to Hemicastration Reprint Icon -
Ford, J.J., Rohrer, G.A., Nonneman, D.J., Lunstra, D.D., Wise, T.H. 2010. Association of Allelic Variants of Thyroid-Binding Globulin With Puberty in Boars and Responses to Hemicastration. Animal Reproduction Science. 119(3-4):228-234.
Association of Functional SNPs in Pig Calpastatin Regulatory Regions with Tenderness Reprint Icon -
Nonneman, D.J., Lindholm-Perry, A.K., Shackelford, S.D., King, D.A., Wheeler, T.L., Rohrer, G.A., Bierman, C., Miller, R.K., Zerby, H., Moeller, S.J. 2010. Association of Functional SNPs in Pig Calpastatin Regulatory Regions with Tenderness. Proc., Midwestern Section of the American Society of Animal Science Meeting. March 15-17, 2010. Des Moines, IA. Abstract #34. p. 11-12.
Allele-Specific Transcription Factor Binding in Pig Calpastatin Promoter Regions Reprint Icon -
Nonneman, Dan J., Lindholm-Perry, Amanda K., Shackelford, Steven D., King, D.Andy, Wheeler, Tommy L., Rohrer, Gary A. 2010. Allele-Specific Transcription Factor Binding in Pig Calpastatin Promoter Regions. Plant and Animal Genome Conference Proceedings XVIII. 1/9-13/2010. San Diego, CA. Abstract #P607.
Association of Single Nucleotide Polymorphism (SNP) Markers in Candidate Genes and QTL Regions with Pork Quality in Commercial Pigs Reprint Icon -
Rohrer, G.A., Nonneman, D.J., Miller, R.K., Zerby, H., Moeller, S.J. 2010. Association of Single Nucleotide Polymorphism (SNP) Markers in Candidate Genes and QTL Regions with Pork Quality in Commercial Pigs. Proc., Midwestern Section of the American Society of Animal Science Meeting. Abstract #33. p. 11.
Characterization of Conserved and Nonconserved Imprinted Genes in Swine Reprint Icon -
Freking, B.A., Bischoff, S.R., Tsai, S., Hardison, N., Motsinger-Reif, A.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J.A. 2010. Characterization of Conserved and Nonconserved Imprinted Genes in Swine [abstract]. Plant and Animal Genome XVIII Conference. Abstract No. W024. Available: http://www.intl-pag.org/18/abstracts/W04_PAGXVIII_024.html
Quantitative genomics of female reproduction Reprint Icon -
Vallet, J.L., Nonneman, D.J., Kuehn, L.A. 2010. Quantitative genomics of female reproduction. In: Jiang, Z., Ott, T.L., editors. Reproductive Genomics in Domestic Animals. Ames, IA: Wiley-Blackwell Publishing. p. 23-51.
Association Analyses of Candidate SNP on Reproductive and Production Traits in Swine Reprint Icon -
Rempel, L.A., Nonneman, D.J., Wise, T.H., Erkens, T., Peelman, L.J., Rohrer, G.A. 2010. Association Analyses of Candidate Single Nucleotide Polymorphisms on Reproductive Traits in Swine. Journal of Animal Science. 88:1-15.
Characterization of Conserved and Non-conserved Imprinted Genes in Swine Reprint Icon -
Bischoff, S.R., Tsai, S., Hardison, N., Motsinger-Reif, A.A., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J.A. 2009. Characterization of Conserved and Non-conserved Imprinted Genes in Swine. Biology of Reproduction. 81(5):906-920.
Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology Reprint Icon -
Ramos, A.M., Crooijmans, R.P.M.A., Affara, N.A., Amaral, A.J., Archibald, A.L., Beever, J.E., Bendixen, C., Churcher, C., Clark, R., Dehais, P., Hansen, M.S., Hedegaard, J., Hu, Z.L., Kerstens, H.H., Law, A.S., Megens, H.J., Milan, D., Nonneman, D.J., Rohrer, G.A., Rothschild, M.F., Smith, T.P.L., Schnabel, R.D., Van Tassell, C.P., Taylor, J.F., Wiedmann, R.T., Schook, L.B., Groenen, M.A.M. 2009. Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology. PLoS One 4(8):E6524. p. 1-13.
Molecular Cloning and Characterisation of Heparanase mRNA in Porcine Placenta Throughout Gestation Reprint Icon -
Miles, J.R., Vallet, J.L., Freking, B.A., Nonneman, D.J. 2009. Molecular Cloning and Characterisation of Heparanase mRNA in Porcine Placenta Throughout Gestation. Reproduction, Fertility and Development. 21(6):757-772.
Relationships among calpastatin single nucleotide polymorphisms, calpastatin expression and tenderness in pork longissimus Reprint Icon -
Lindholm-Perry, A.K., Rohrer, G.A., Holl, J.W., Shackelford, S.D., Wheeler, T.L., Koohmaraie, M., Nonneman, D.J. 2009. Relationships among calpastatin single nucleotide polymorphisms, calpastatin expression and tenderness in pork longissimus. Animal Genetics. 40(5):713-721.
MicroRNA Transcriptome Profiles During Swine Skeletal Muscle Development Reprint Icon -
McDaneld, T.G., Smith, T.P., Doumit, M.E., Miles, J.R., Coutinho, L.L., Sonstegard, T.S., Matukumalli, L.K., Nonneman, D.J., Wiedmann, R.T. 2009. MicroRNA Transcriptome Profiles During Swine Skeletal Muscle Development. Biomed Central (BMC) Genomics. 10:77.
Impact of Selection for Uterine Capacity on the Placental Transcriptome -
Freking, B.A., Miles, J.R., Bischoff, S.R., Tsai, S., Hardison, N., Xia, Y., Nonneman, D.J., Vallet, J.L., Piedrahita, J.A. 2009. Impact of Selection for Uterine Capacity on the Placental Transcriptome [Abstract]. In: Control of Pig Reproduction VIII (H. Rodriguez-Martinez, J.L. Vallet and A.J. Ziecik, eds.) Journal of Reproduction and Fertility Supplement. 66:207-208.
SNP Discovery in Swine by Reduced Representation and High Throughput Pyrosequencing Reprint Icon -
Nonneman, D.J., Wiedmann, R.T., Smith, T.P. 2009. SNP Discovery in Swine by Reduced Representation and High Throughput Pyrosequencing. Plant and Animal Genome Conference XVII Proceedings. 1/10-14/2009, San Diego, CA. Abstract P531.
Positional candidate genes for kyphosis in commercial swine populations Reprint Icon -
Lindholm-Perry, A.K., Rohrer, G.A., Keele, J.W., Holl, J.W., Shackelford, S.D., Wheeler, T.L., Koohmaraie, M., Nonneman, D.J. 2009. Positional Candidate Genes for Kyphosis in Commercial Swine Populations. Proc., Plant and Animal Genome Conference XVII. 1/10-14/2009, San Diego, CA. P529.
Design of the Illumina Porcine 50K+ SNP Iselect(TM) Beadchip and Characterization of the Porcine HapMap Population Reprint Icon -
Groenen, M.A., Crooijmans, R.P., Ramos, A.M., Amaral, A.J., Kerstens, H., Bendixen, C., Hedegaard, J., Rohrer, G.A., Smith, T.P., Van Tassell, C.P., Taylor, J.F., Rothschild, M., Hu, Z., Nonneman, D.J., Beever, J., Archibald, A., Law, A., Milan, D., Hansen, M., Schook, L. 2009. Design of the Illumina Porcine 50K+ SNP Iselect(TM) Beadchip and Characterization of the Porcine HapMap Population. Plant and Animal Genome Conference Proceedings. 1/10-14/09, San Diego, CA. Abstract W493.
SNP discovery in swine by reduced representation and high throughput pyrosequencing Reprint Icon -
Wiedmann, R.T., Smith, T.P., Nonneman, D.J. 2008. SNP discovery in swine by reduced representation and high throughput pyrosequencing. BioMed Central (BMC) Genetics. 9:81.
Genetic relationships of body composition, serum leptin, and age at puberty in gilts Reprint Icon -
Kuehn, L.A., Nonneman, D.J., Klindt, J.M., Wise, T.H. 2009. Genetic relationships of body composition, serum leptin, and age at puberty in gilts. Journal of Animal Science. 87(2):477-483.
Studies on cattle genomic structural variation provide insights into ruminant speciation and adaptation -
Liu, G., Zhu, B., Alexander, L.J., Matukumalli, L.K., Van Tassell, C.P., Sonstegard, T.S., Nonneman, D.J., Keele, J.W. 2009. Studies on cattle genomic structural variation provide insights into ruminant speciation and adaptation. [abstract]. Plant and Animal Genome Conference Proceedings. W093.
High throughput SNP discovery and validation in the pig: towards the development of a high density swine SNP chip -
Ramos, A.M., Crooijmans, R.P., Fonseca, A., Kerstens, H., Bendixen, C., Hedegaard, J., Rohrer, G.A., Smith, T.P., Van Tassell, C.P., Taylor, J.F., Rothschild, M., Nonneman, D.J., Beever, J., Archibald, A., Schook, L., Groenen, M.A. 2008. High throughput SNP discovery and validation in the pig: towards the development of a high density swine SNP chip. Proc., 2nd European Conference on Pig Genomics, June 4-5, 2008, Ljubljana, Slovenia. Poster #2234.
Genetic variation in the mannosidase 2B2 gene and its association with ovulation rate in pigs. -
Campbell, E.M., Nonneman, D.J., Kuehn, L.A., Rohrer, G.A. 2008. Genetic variation in the mannosidase 2B2 gene and its association with ovulation rate in pigs. Animal Genetics. 39:515-519.
Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays Reprint Icon -
Bischoff, S.R., Tsai, S., Hardison, N.E., York, A.M., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J.A. 2008. Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays. Biomed Central (BMC) Genomics 9:252.
Update on genetic markers for pork quality -
Rohrer, G.A., Holl, J.W., Lindholm-Perry, A.K., Nonneman, D.J., Shackelford, S.D., Wheeler, T.L., Koohmaraie, M. 2007. Update on genetic markers for pork quality. Conference Proc., National Swine Improvement Federation Conference & Ann. Mtg., Dec. 5-7, 2007. Kansas City, MO, NSIF Volume 32, www.nsif.com
Evidence of Allelic Suppression for Transcripts Expressed in Day 30 Pig Embryos by SNP Genotyping Reprint Icon -
Freking, B.A., Nonneman, D.J., Rohrer, G.A., Bischoff, S.R., Tsai, S., Piedrahita, J.A. 2008. Evidence of allelic suppression for transcripts expressed in day 30 pig embryos by SNP genotyping [abstract]. Journal of Animal Science. 86(E-Suppl. 3):51. Abstract #44.
Placental transcriptome profile differences associated with selection for uterine capacity Reprint Icon -
Freking, B.A., Miles, J.R., Bischoff, S.R., Xia, Y., Nonneman, D.J., Vallet, J.L., Piedrahita, J.A. 2008. Placental transcriptome profile differences associated with selection for uterine capacity [abstract]. Journal of Animal Science. 86(E-Suppl. 3):49. Abstract #36.
Integrating the USMARC genetic map for the pig with the pig physical map -
Wiedmann, R.T., Freking, B.A., Nonneman, D.J., Snelling, W.M., Keele, J.W., Harhay, G.P., Rohrer, G.A. Integrating the USMARC genetic map for the pig with the pig physical map. 2008. Annual International Plant & Animal Genome Conference. Poster No. P565, pg 259.
Segmental duplication and copy number variation of the patched domain containing 3 (PTCHD3) locus on pig chromosome 10 -
Nonneman, D.J., Kuehn, L.A. 2008. Segmental duplication and copy number variation of the patched domain containing 3 (PTCHD3) locus on pig chromosome 10 (abstract). Plant and Animal Genome XVI Conference Proceedings. Poster No. P578.
A high utility integrated map of the pig genome -
Humphray, S.J., Scott, C.E., Clark, R., Marron, B., Bender, C., Camm, N., Davis, J., Jenks, A., Noon, A., Patel, M., Sehra, H., Yang, F., Rogatcheva, M.B., Milan, D., Chardon, P., Rohrer, G., Nonneman, D., de Jong, P., Meyers, S.N., Archibald, A., Beever, J.E., Schook, L.B., Rogers, J. 2007. A high utility integrated map of the pig genome. Genome Biology. 8(7):R139.
Comparative and physical mapping of 112 previously reported and 105 new porcine microsatellites -
Alexander, L.J., Juneja, B., Shiroma, D., Nonneman, D.J., Snelling, W.M., Fahrenkrug, S.C. 2007. Comparative and physical mapping of 112 previously reported and 105 new porcine microsatellites. Animal Genetics 38:584-594.
Associations of Candidate SNP on Age, Leptin Concentration, Backfat, and Body Weight at Puberty in Gilts Reprint Icon -
Kuehn, L.A., Nonneman, D.J., Jiang, Z., Leymaster, K.A., Wise, T.H. 2007. Associations of candidate SNP on age, leptin concentration, backfat, and body weight at puberty in gilts [abstract]. Journal of Animal Science. 85(Suppl. 2):63. Abstract #50.
Single Nucleotide Polymorphisms for Pig Identification and Parentage Exclusion -
Rohrer, G.A., Freking, B.A., Nonneman, D.J. 2007. Single nucleotide polymorphisms for pig identification and parentage exclusion. Animal Genetics. 38:253-258.
Detection of Single Nucleotide Polymorphisms Associated with Ultrasonic Backfat Depth in a Segregating Meishan x White Composite Population -
Kuehn, L.A., Rohrer, G.A., Nonneman, D.J., Thallman, R.M., Leymaster, K.A. 2007. Detection of single nucleotide polymorphisms associated with ultrasonic backfat depth in a segregating Meishan x White Composite population. Journal of Animal Science. 85:1111-1119.
Detection of transcriptional difference of porcine imprinted genes using different microarray platforms -
Tsai, S., Mir, B., Martin, A.C., Estrada, J.L., Bischoff, S.R., Hsieh, W., Cassady, J.P., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J. 2006. Detection of transcriptional difference of porcine imprinted genes using different microarray platforms. (BMC) Genomics. 7:328.
Novel porcine repetitive elements -
Wiedmann, R.T., Nonneman, D.J., Keele, J.W. 2006. Novel porcine repetitive elements. Biomed Central (BMC) Genomics. 7:304 (12 pp). Online. BMC Genomics doi:10.1186/1471-2164/7/304. Available: http://www.biomedcentral.com/1471-2164/7/304.
Sequencing the Pig Genome Using a Mapped BAC by BAC Approach Reprint Icon -
Humphray, S.J., Scott, C., Clark, R., Marron, B., Plumb, R., Bender, C., Camm, N., Davis, J., Jenks, A., Noon, A., Patel, M., Sehra, H., Rogatcheva, M., Milan, D., Chardon, P., Rohrer, G.A., Nonneman, D.J., De Jong, P., Meyers, S., Archibald, A., Beever, J., Schook, L., Rogers, J. 2007. Sequencing the pig genome using a mapped BAC by BAC approach. Plant and Animal Genome Conference Proceedings. Abstract P34, p. 110.
Fine-mapping QTL for nipple number in the pig -
Nonneman, D.J., Kuehn, L.A., Rohrer, G.A. 2007. Fine-mapping QTL for nipple number in the pig [abstract]. Plant and Animal Genome XV Conference. Poster No. P579.
An updated USMARC genetic map for the pig integrated with the pig physical map -
Rohrer, G.A., Snelling, W.M., Freking, B.A., Nonneman, D.J., Harhay, G.P., Keele, J.W. 2007. An updated USMARC genetic map for the pig integrated with the pig physical map [abstract]. Plant and Animal Genome XV Conference. Poster No. W421.
Characterization of the aldo-keto reductase 1C gene cluster on pig chromosome 10: possible associations with reproductive traits -
Nonneman, D.J., Wise, T.H., Ford, J.J., Kuehn, L.A., Rohrer, G.A. 2006. Characterization of the aldo-keto reductase 1C gene cluster on pig chromosome 10: possible associations with reproductive traits. Biomed Central (BMC) Veterinary Research. 2:28. 2006.
A LINEAR MIXED MODEL APPROACH TO IDENTIFYING EXPRESSED SINGLE FEATURE POLYMORPHISMS -
Bischoff, S.R., Tsai, S., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J.A. 2006. A linear mixed model approach to identifying expressed single feature polymorphisms [abstract]. International Mammalian Genome Society (IMGS) Annual Meeting, Charleston, SC, November, 2006. Abstract #P12.
CHARACTERIZATION OF THE ALDO-KETO REDUCTASE 1C GENE CLUSTER ON PIG CHROMOSOME 10 AND ASSOCIATION WITH AGE OF PUBERTY AND OVULATION RATE -
Nonneman, D.J., Wise, T.H., Ford, J.J., Rohrer, G.A. 2006. Characterization of the aldo-keto reductase 1C gene cluster on pig chromosome 10 and association with age of puberty and ovulation rate. (Abstract) Animal Genetics International Conference Proceedings. p. 88. Abstract #D277.
Allelic variation in porcine resistin (RETN) gene is associated with fatness traits in a Wild Boar x Meishan reference family Reprint Icon -
Cepica, S., Knoll, A., Masopust, M., Vykoukalova, Z., Bartenschlager, H., Nonneman, D.J., Rohrer, G.A., Geldermann, H. 2006. Allelic variation in porcine resistin (RETN) gene is associated with fatness traits in a Wild Boar x Meishan reference family. Proc., 30th International Conference on Animal Genetics Abstract #C310, p. 72.
SEQUENCING THE PIG GENOME USING A BAC BY BAC APPROACH -
Humphray, S., Scott, C., Clark, R., Marron, B., Jones, M., Plumb, R., Sims, S., Rogatcheva, M., Milan, D., Chardon, P., Rohrer, G.A., Nonneman, D.J., De Jong, P., Meyers, S., Archibald, A., Beever, J., Schook, L., Rogers, J. 2006. Sequencing the pig genome using a BAC by BAC approach. (Abstract) Animal Genetics International Conference Proceedings. p. 56. Abstract #B404.
DETECTION OF SINGLE NUCLEOTIDE POLYMORPHISMS ON PORCINE CHROMOSOME 7 ASSOCIATED WITH ULTRASONIC BACKFAT IN A SEGREGATING MEISHAN X WHITE CROSS POPULATION USING A MODEL WITH POLYGENIC EFFECTS -
Kuehn, L.A., Rohrer, G.A., Nonneman, D.J., Thallman, R.M., Leymaster, K.A. 2006. Detection of single nucleotide polymorphisms on porcine chromosome 7 associated with ultrasonic backfat in a segregating Meishan x White Cross population using a model with polygenic effects. (Abstract) Animal Genetics International Conference Proceedings. p. 104. Abstract #E353.
EXPRESSION PROFILES OF MICRO-RNAS IN SWINE MUSCLE DEVELOPMENT -
Wiedmann, R.T., Doumit, M.E., Matukumalli, L.K., Sonstegard, T.S., Coutinho, L.L., Nonneman, D.J., Smith, T.P. 2006. Expression profiles of micro-RNAs in swine muscle development. (Abstract) International Conference on Animal Genetics. p. 70. Abstract #C278.
MOLECULAR CLONING OF PORCINE OGT CDNA AND MAPPING TO THE X CHROMOSOME -
Kim, J.G., Ford, J.J., Rohrer, G.A., Nonneman, D.J. 2006. Molecular cloning of porcine OGT cDNA and mapping to the X chromosome [abstract]. Biology of Reproduction. Supplement:154.
REARRANGED GENE ORDER BETWEEN PIG AND HUMAN IN A QUANTITATIVE TRAIT LOCI REGION ON SSC3 -
Mousel, M.R., Nonneman, D.J., Rohrer, G.A. 2006. Rearranged gene order between pig and human in a quantitative trait loci region on SSC3. Animal Genetics. 37:403-406
SEQUENCE VARIATION AND EVALUATION OF INHIBIN ALPHA-SUBUNIT AND STEROIDOGENIC ACUTE REGULATORY PROTEIN FOR REPRODUCTIVE TRAITS IN SWINE -
Kim, J.G., Nonneman, D.J., Vallet, J.L., Wise, T.H., Rohrer, G.A. Sequence variation and evaluation of inhibin alpha-subunit and steroidogenic acute regulatory protein for reproductive traits in swine. Animal Genetics. 37:424-425. 2006.
ANNOTATION OF THE AFFYMETRIX PORCINE GENOME MICROARRAY -
Tsai, S., Cassady, J.P., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J.A. 2006. Annotation of the affymetrix porcine genome microarray. Animal Genetics. 37:423-424.
RADIATION HYBRID MAPPING OF 18 POSITIONAL AND PHYSIOLOGICAL CANDIDATE GENES FOR ARTHROGRYPOSIS MULTIPLEX CONGENITA ON PORCINE CHROMOSOME 5 -
Genini, S., Nguyen, T.T., Malek, M., Talbot, R., Gebert, S., Rohrer, G.A., Nonneman, D.J., Stranzinger, G., Vogeli, P. 2006. Radiation hybrid mapping of 18 positional and physiological candidate genes for arthrogryposis multiplex congenita on porcine chromosome 5. Animal Genetics. 37:239-244.
VALIDATION OF QTL FOR REPRODUCTIVE TRAITS IN ADVANCED GENERATIONS OF A MEISHAN CROSS POPULATION -
Rohrer, G.A., Nonneman, D.J., Wise, T.H., Ford, J.J. 2006. Validation of QTL for reproductive traits in advanced generations of a Meishan cross population. Proc., Plant and Animal Genome XIV, 1/14-18/2006. San Diego, CA, Poster #P577, p. 245.
LACK OF ASSOCIATION OF CALPASTATIN HAPLOTYPES WITH MEAT QUALITY IN A DUROC-LANDRACE SWINE RESOURCE POPULATION -
Nonneman, D.J., Rohrer, G.A., Shackelford, S.D., Wheeler, T.L., Koohmaraie, M. 2005. Lack of association of calpastatin haplotypes with meat quality in a Duroc-Landrace swine resource population. Proc., Midwestern Section of the American Society of Animal Science. Abstract #38. p. 9.
ANNOTATION OF AFFYMETRIX PORCINE GENOME MICROARRAY CHIP -
Tsai, S., Weir, B., Cassady, J., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J. 2006. Annotation of affymetrix porcine genome microarray chip. Plant and Animal Genome Conference Proceedings. Poster #P768. p. 292.
AN INTEGRATED BAC PHYSICAL MAP OF THE PIG GENOME AND SELECTION OF THE MINIMUM TILEPATH -
Humphray, S., Scott, C., Clark, R., Marron, B., Plumb, R., Rogatcheva, M., Milan, D., Chardon, P., Rohrer, G.A., Nonneman, D.J. 2006. An integrated BAC physical map of the pig genome and selection of the minimum tilepath. Plant and Animal Genome Conference Proceedings. Poster #W237. p. 60.
MICROARRAY PLATFORM COMPARISON FOR PORCINE GENE EXPRESSION STUDIES -
Tsai, S., Mir, B., Martin, A., Estrada, J., Bischoff, S., Cassady, J., Weir, B., Freking, B.A., Nonneman, D.J., Rohrer, G.A., Piedrahita, J. 2006. Microarray platform comparison for porcine gene expression studies. Plant and Animal Genome Conference Proceedings. Poster #W241. p. 61.
USE OF PORCINE PARTHENOTES AND GENE EXPRESSION PROFILING USING MICROARRAYS FOR IDENTIFICATION OF IMPRINTED GENES -
Piedrahita, J.A., Bischoff, S.R., Estrada, J.L., Freking, B.A., Nonneman, D.J., Martin, A.C., Mir, B., Rohrer, G.A., Tsai, S. 2006. Use of porcine parthenotes and gene expression profiling using microarrays for identification of imprinted genes [abstract]. Proceedings of the 32nd International Conference of the International Embryo Transfer Society (IETS), January 8-10, 2006, Orlando, FL. Page 239.
DEVELOPMENT OF INFORMATION SYSTEMS FOR MARKER-ASSISTED SELECTION OF CATTLE -
Nonneman, D.J., Casas, E. 2005. Development of information systems for marker-assisted selection of cattle. Morelos, Mexico. 11/13-19/2005. IN: Proceedings, XLI National Livestock Research Meeting.
DEVELOPMENT OF POPULATIONS FOR IDENTIFYING QUANTITATIVE TRAIT LOCI (QTL) IN SWINE -
Nonneman, D.J. 2005. Development of populations for identifying quantitative trait loci (QTL) in swine. Morelos, Mexico. 11/13-19/2005. IN: Proceedings, XLI National Livestock Research Meeting.
ASSIGNMENT OF 12 GENES TO PORCINE CHROMOSOME 1Q BY LINKAGE AND RADIATION HYBRID MAPPING -
Nonneman, D.J., Smith, T.P., Freking, B.A., Rohrer, G.A. 2005. Assignment of 12 genes to porcine chromosome 1q by linkage and radiation hybrid mapping. Anim. Genet. 36:532-533. 2005.
Isolation and Enrichment of Abundant Microsatellites From A Channel Catfish (Ictalurus punctatus) Brain CDNA Library -
Nonneman, D., Waldbieser, G.C. 2005. Isolation and Enrichment of Abundant Microsatellites from a Channel Catfish (Ictalurus punctatus) Brain cDNA Library. Animal Biotechnology. 16:103-116.
ACHIEVEMENTS OF RESEARCH IN THE FIELD OF MOLECULAR GENETICS -
Casas, E., Nonneman, D.J. 2005. Achievements of research in the field of molecular genetics. In: Rosati, A. Tewolde, A., Mosconi, C., editors. WAAP Book of the Year 2005. Wageningen, The Netherlands: Wageningen Academic Publishers. p. 49-58.
(BRIEF NOTE) LINKAGE MAPPING OF THE PORCINE CHROMOGRANIN B (CHGB) GENE TO CHROMOSOME 17 -
Kim, J.G., Nonneman, D., Vallet, J.L., Rohrer, G.A., Christenson, R.K. 2005. (Brief Note) Linkage mapping of the porcine chromogranin B (CHGB) gene to chromosome 17. Animal Genetics. 36(2):168.
A REFINED COMPARATIVE MAP BETWEEN PORCINE CHROMOSOME 3 AND HUMAN CHROMOSOMES 2, 7 AND 16 -
Mousel, M.R., Nonneman, D.J., Rohrer, G.A. A refined comparative map between porcine chromosome 3 and human chromosomes 2, 7 and 16. Proc., Midwestern Section of the American Society of Animal Science. p. 11. 2005
IDENTIFICATION OF NOVEL PORCINE REPEAT ELEMENTS -
Wiedmann, R.T., Nonneman, D.J., Keele, J.W. Identification of novel porcine repeat elements. Proc., Plant & Animal Genome XIII, San Diego, CA. P528. p. 203. 2005.
(BRIEF NOTE) LINKAGE MAPPING OF THE PORCINE MYELIN BASIC PROTEIN (MBP) GENE TO CHROMOSOME 1 -
Kim, J.G., Nonneman, D.J., Vallet, J.L., Rohrer, G.A., Christenson, R.K. 2005. (Brief note) Linkage mapping of the porcine myelin basic protein gene to chromosome 1. Animal Genetics. 36(2):163-164.
SINGLE NUCLEOTIDE POLYMORPHISMS FOR PIG IDENTIFICATION AND PARENTAGE EXCLUSION -
Rohrer, G.A., Freking, B.A., Nonneman, D.J. 2005. Single nucleotide polymorphisms for pig identification and parentage exclusion. Proc., Plant & Animal Genome XIII, San Diego, CA. P203. p. 125.
A VARIANT OF PORCINE THYROXINE-BINDING GLOBULIN HAS REDUCED AFFINITY FOR THYROXINE AND IS ASSOCIATED WITH TESTIS SIZE -
Nonneman, D.J., Rohrer, G.A., Wise, T.H., Lunstra, D.D., Ford, J.J. 2005. A variant of porcine thyroxine-binding globulin has reduced affinity for thyroxine and is associated with testis size. Biology of Reproduction. 72:214-220.
ADDITION OF FOURTEEN ANCHORED LOCI TO THE PORCINE CHROMOSOME 8 COMPARATIVE MAP -
Kim, J.G., Rohrer, G.A., Vallet, J.L., Christenson, R.K., Nonneman, D. 2004. Addition of 14 anchored loci to the porcine chromosome 8 comparative map. Animal Genetics. 35(6):474-476.
GENETICS: MOLECULAR -
Nonneman, D.J., Smith, T.P. 2004. Genetics: Molecular. Encyclopedia of Animal Science. p. 466-468.
COMPARATIVE MAPPING OF HUMAN CHROMOSOME 10 TO PIG CHROMOSOMES 10 AND 14 -
Nonneman, D.J., Rohrer, G.A. 2004. Comparative mapping of human chromosome 10 to pig chromosomes 10 and 14. Animal Genetics 35:338-343.
EVALUATION OF AN SNP IN STEROIDOGENIC ACUTE REGULATORY (STAR) PROTEIN FOR REPRODUCTIVE TRAITS IN SWINE -
Kim, J.G., Vallet, J.L., Christenson, R.K., Rohrer, G.A., Nonneman, D. 2004. Evaluation of an SNP in steroidogenic acute regulatory (STAR) protein for reproductive traits in swine [abstract]. Journal of Animal Science. 82(Supplement 1):65. (Abstract #M258)
MOLECULAR CLONING AND ENDOMETRIAL EXPRESSION OF PORCINE HIGH DENSITY LIPOPROTEIN RECEPTOR SR-BI DURING THE ESTROUS CYCLE AND EARLY PREGNANCY -
Kim, J.G., Vallet, J.L., Nonneman, D., Christenson, R.K. 2004. Molecular cloning and endometrial expression of porcine high density lipoprotein receptor SR-BI during the estrous cycle and early pregnancy. Molecular and Cellular Endocrinology. 222(1-2):105-112.
ASSOCIATION OF A POLYMORPHISM IN THYROXINE BINDING GLOBULIN WITH BACKFAT DEPTH IN A COMPOSITE POPULATION CONTAINING 25% MEISHAN GERMPLASM -
Rohrer, G.A., Nonneman, D.J., Ford, J.J., Wise, T.H. 2004. Association of a polymorphism in thyroxine binding globulin with backfat depth in a composite population containing 25% meishan germplasm. Journal of Animal Science 82(Suppl. 2):42-43.
FUNCTIONAL VALIDATION OF A POLYMORPHISM FOR TESTSIS SIZE ON THE PORCINE X CHROMOSOME -
Nonneman, D.J., Rohrer, G.A., Ford, J.J., Wise, T.H., Lunstra, D.D. 2004. Functional validation of a polymorphism for testis size on the porcine X chromosome. Plant and Animal Genome Abstracts, W228, p. 62.
POSITIONAL CANDIDATE GENES FOR REPRODUCTIVE TRAITS IN A MEISHAN-WHITE COMPOSITE RESOURCE POPULATION ON PIG CHROMOSOME 10 -
Nonneman, D.J., Rohrer, G.A. 2003. Positional candidate genes for reproductive traits in a meishan-white composite resource population on pig chromosome 10. Journal of Animal Science 81(Suppl. 1):160.
BRIEF NOTE. LINKAGE MAPPING OF A SNP IN THE PORCINE MADH1 GENE TO A REGION OF CHROMOSOME 8 THAT CONTAINS QTL FOR UTERINE CAPACITY -
KIM, J.G., NONNEMAN, D.J., ROHRER, G.A., VALLET, J.L., CHRISTENSON, R.K. BRIEF NOTE. LINKAGE MAPPING OF A SNP IN THE PORCINE MADH1 GENE TO A REGION OF CHROMOSOME 8 THAT CONTAINS QTL FOR UTERINE CAPACITY. ANIMAL GENETICS. 2003. v. 34(4). p. 310-311.
MOLECULAR CHARACTERIZATION AND ENDOMETRIAL EXPRESSION OF PORCINE SMAD1 -
KIM, J.G., VALLET, J.L., NONNEMAN, D.J., ROHRER, G.A., CHRISTENSON, R.K. MOLECULAR CHARACTERIZATION AND ENDOMETRIAL EXPRESSION OF PORCINE SMAD1. JOURNAL OF ANIMAL SCIENCE SUPPLEMENT. 2003. v. 81(Suppl. 1). p. 243. Abstract No. T27.
MOLECULAR CLONING OF THE PROCINE INHIBIN-BETA B PRECURSOR SUBUNIT GENE AND REASSIGNMENT TO CHROMOSOME 15 -
NONNEMAN, D.J., ROHRER, G.A. MOLECULAR CLONING OF THE PROCINE INHIBIN-BETA B PRECURSOR SUBUNIT GENE AND REASSIGNMENT TO CHROMOSOME 15. ANIMAL GENETICS. 2003. v. 34. p. 213-215.
PRODUCTION OF A PORCINE-HUMAN COMPARATIVE MAP BASED ON THE PORCINE GENETIC MAP AND HUMAN GENOME SEQUENCE -
Rohrer, G.A., Nonneman, D.J., Freking, B.A., Harhay, G.P., Snelling, W.M., Keele, J.W. 2002. Production of a porcine-human comparative map based on the porcine genetic map and human genome sequence. Plant and Animal Genome Conference Proceedings. Abstract P612.
BRIEF NOTE. LINKAGE MAPPING OF THE PORCINE TESTIS ENHANCED GENE TRANSCRIPT (TEGT) GENE TO CHROMOSOME 5 -
KIM, J.G., NONNEMAN, D.J., VALLET, J.L., CHRISTENSON, R.K. BRIEF NOTE. LINKAGE MAPPING OF THE PORCINE TESTIS ENHANCED GENE TRANSCRIPT (TEGT) GENE TO CHROMOSOME 5. ANIMAL GENETICS. 2003. v. 34(2). p. 152-153.
DEVELOPMENT OF AN EST-DERIVED SNP-BASED LINKAGE MAP IN SWINE -
Nonneman, D.J., Keele, J.W., Freking, B.A., Rohrer, G.A. Proceeding of the Plant & Animal Genome XI, 1/11-15/2003, San Diego, CA. p. 231.
BRIEF NOTE. LINKAGE MAPPING OF A SINGLE NUCLEOTIDE POLYMORPHISM (SNP) IN THE PORCINE QDPR GENE TO CHROMOSOME 8 -
KIM, J.G., NONNEMAN, D.J., VALLET, J.L., ROHRER, G.A., CHRISTENSON, R.K. BRIEF NOTE. LINKAGE MAPPING OF A SINGLE NUCLEOTIDE POLYMORPHISM (SNP) IN THE PORCINE QDPR GENE TO CHROMOSOME 8. ANIMAL GENETICS. 2002. v. 33(6). p. 474.
LINKAGE MAPPING OF PORCINE DGAT1 TO A REGION OF PORCINE CHROMOSOME 4 THAT CONTAINS QTL FOR GROWTH AND FATNESS -
NONNEMAN, D.J., ROHRER, G.A. LINKAGE MAPPING OF PORCINE DGAT1 TO A REGION OF PORCINE CHROMOSOME 4 THAT CONTAINS QTL FOR GROWTH AND FATNESS. ANIMAL GENETICS. 2002. v. 33. p. 472-473.
MAPPING OF THE PORCINE ALPHA-FETOPROTEIN (AFP) GENE TO SWINE CHROMOSOME 8 -
KIM, J.G., NONNEMAN, D.J., VALLET, J.L., CHRISTENSON, R.K. MAPPING OF THE PORCINE ALPHA-FETOPROTEIN (AFP) GENE TO SWINE CHROMOSOME 8. ANIMAL GENETICS. 2002. v. 33(6). p. 471-472.
FINE MAPPING A QTL AFFECTING OVULATION RATE IN SWINE ON CHROMOSOME 8 -
CAMPBELL, E.M.C., NONNEMAN, D.J., ROHRER, G.A. FINE MAPPING A QTL AFFECTING OVULATION RATE IN SWINE ON CHROMOSOME 8. JOURNAL OF ANIMAL SCIENCE. 2003. v.81. p. 1706-1714.
COMPARATIVE MAPPING OF A REGION ON CHROMOSOME 10 CONTAINING QTL FOR REPRODUCTION IN SWINE -
NONNEMAN, D.J., ROHRER, G.A. COMPARATIVE MAPPING OF A REGION ON CHROMOSOME 10 CONTAINING QTL FOR REPRODUCTION IN SWINE. ANIMAL GENETICS. 2003. v. 34. p. 42-46.
GENETIC MAPPING PORCINE EST SEQUENCES USING LENGTH POLYMORPHISMS -
Rohrer, G.A., Freking, B.A., Nonneman, D.J. 2002. Genetic mapping porcine EST sequences using length polymorphisms. 28th Animal Genetics International Conference Proceedings. Abstract D115. p. 121-122.
MAPPING MICROSATELLITE MARKERS IDENTIFIED IN PORCINE EST SEQUENCES -
ROHRER, G.A., FAHRENKRUG, S.C., NONNEMAN, D.J., TAO, N., WARREN, W.C. MAPPING MICROSATELLITE MARKERS IDENTIFIED IN PORCINE EST SEQUENCES. ANIMAL GENETICS. 2002. v. 33. p. 372-376.
COMPARATIVE RADIATION HYBRID MAPPING OF THE MOUSE HIGH GROWTH (HG) REGION IN CATTLE AND PIGS -
Farber, C.R., Smith, T.P., Nonneman, D.J., Medrano, J.F. 2002. Comparative Radiation Hybrid Mapping of the Mouse High Growth (HG) Region in Cattle and Pigs. Plant and Animal Genome Conference Proceedings X. San Diego, CA. 1/12-16/2002. Abstract P136. p. 112.
Variants of Microcystin in Southeastern USA Channel Catfish (Ictalurus puntctatus ralfinesque) Production Ponds -
Zimba, P.V., Boue, S.M., Chatham, M.A., Nonneman, D.J. 2002. Variants of Microcystin in Southeastern USA Channel Catfish (Ictalurus puntctatus ralfinesque) Production Ponds. International Society Of Limnology 28:1163-1166.
MOLECULAR CLONING AND MAPPING OF THE BOVINE AND OVINE SKELETAL MUSCLE-SPECIFIC CALPAINS -
RAPID COMMUNICATION: A POLYMORPHIC MICROSATELLITE IN THE PROMOTER REGION OF THE BOVINE CALPASTATIN GENE -
AN IMPROVED PURIFICATION PROTOCOL FOR HEART AND SKELETAL MUSCLE CALPASTATIN REVEALS TWO ISOFORMS RESULTING FROM ALTERNATIVE SPLICING -
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Last Modified: 5/2/2016
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