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United States Department of Agriculture

Agricultural Research Service

Related Topics

Benjamin F Matthews (Ben)
Soybean Genomics & Improvement Laboratory
Plant Physiologist

Phone: (301) 504-5730
Fax: (301) 504-5728
Room 109

10300 BALTIMORE AVENUE
BLDG 006 BARC-WEST
BELTSVILLE , MD 207050000


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Agrobacterium rhizogenes - based transformation of soybean roots to form composite plants -
Matthews, B.F., Youssef, R.M. 2016. Agrobacterium rhizogenes - based transformation of soybean roots to form composite plants. Bio-protocol. 6:e1708.
Genome Sequencing and Analysis of Phomopsis longicolla Isolate MSPL 10-6 Causing Phomopsis Seed Decay in Soybean -
A searchable database for the genome of Phomopsis longicolla (isolate MSPL 10-6) -
Darwish, O., Li, S., May, Z., Matthews, B.F., Alkharouf, N. 2016. A searchable database for the genome of Phomopsis longicolla isolate MSPL 10-6. Bioinformation. 12(4):233-236.
Genome-wide functional annotation of Phomopsis longicolla isolate MSPL 10-6 -
Darwish, O., Li, S., Matthews, B.F., Alkharouf, N. 2016. Genome-wide functional annotation of Phomopsis longicolla isolate MSPL 10-6. Genomics Data. 8:67-69.
Soybean cyst nematode, Heterodera glycines, infection assay using soybean roots -
Matthews, B.F., Youssef, R.M. 2016. Soybean cyst nematode, Heterodera glycines, infection assay using soybean roots. Bio-protocol. 6:e1707.
Root transformation of Glycine max with responsive promoters to nematode infection -
Alzohairy, A.M., Macdonald, M.H., Amer, R., Matthews, B.F. 2015. Root transformation of Glycine max with responsive promoters to nematode infection. Egyptian Journal of Genetics and Cytology. 44:149-164.
Draft genome sequence of Phomopsis longicolla MSPL 10-6 -
Li, S., Darwish, O., Alkharouf, N., Matthews, B.F., Ji, P., Domier, L.L., Zhang, N., Bluhm, B.H. 2015. Draft genome sequence of Phomopsis longicolla MSPL 10-6. Genomics Data. 3:55-56.
Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction -
Hosseini, P., Matthews, B.F. 2014. Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction. Biomed Central (BMC) Plant Biology. 14:300.
SoyProLow: A protein database enriched in low abudndant soybean proteins -
Natarajan, S.S., Tavakolan, M., Alkharour, N.W., Matthews, B.F. 2014. SoyProLow: A protein database enriched in low abudndant soybean proteins. Bioinformation. 10(9): 598-601.
SCNProDB: A database for the identification of soybean cyst nematode proteins -
Tavakolan, M., Alkharouf, N.W., Matthews, B.F., Natarajan, S.S. 2014. SCNProDB: A database for the identification of soybean cyst nematode proteins. Bioinformation. 10(9):400-405.
Floral transcriptomes in woodland strawberry uncover developing receptacle and another gene networks Reprint Icon -
Hollender, C.A., Kang, C., Darwish, O., Geretz, A., Matthews, B.F., Slovin, J.P., Alkharouf, N., Liu, Z. 2014. Floral transcriptomes in woodland strawberry uncover developing receptacle and another gene networks. Plant Physiology. DOI:10.1104/pp.114.237529.
Ectopic expression of Arabidopsis genes encoding salicylic acid- and jasmonic acid-related proteins confers partial resistance to soybean cyst nematode (Heterodera glycines) in transgenic soybean roots -
Matthews, B.F., Beard, H.S., Brewer, E.P., Kabir, S., Macdonald, M.H., Youssef, R.M. 2014. Ectopic expression of Arabidopsis genes encoding salicylic acid- and jasmonic acid-related proteins confers partial resistance to soybean cyst nematode (Heterodera glycines) in transgenic soybean roots. Biomed Central (BMC) Plant Biology. 14:96.
Manipulation of two alpha-endo-beta-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots -
Woo, M., Beard, H.S., Macdonald, M.H., Brewer, E.P., Youssef, R., Kim, H., Matthews, B.F. 2014. Manipulation of two alpha-endo-beta-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots. Molecular Plant Pathology. DOI:15.10.1111/mpp.12157.
Overexpression of four Arabidopsis thaliana NHLgenes in soybean (Glycine max) roots and their effect over resistance to the soybean cyst nematode (Heterodera glycines) -
Maldonado, A., Macdonald, M.H., Brewer, E.P., Beard, H.S., Youssef, R.M., Matthews, B.F. 2014. Overexpression of four Arabidopsis thaliana NHLgenes in soybean (Glycine max) roots and their effect over resistance to the soybean cyst nematode (Heterodera glycines). Physiological and Molecular Plant Pathology. 86:1-10.
Modification of the expression of two NPR1 suppressors SNC1 and SNI1, in coybean (Glycine max) confers partial resistance to the soybean cyst nematode (Heterodera glycines) -
Maldonado, A., Macdonald, M.H., Youssef, R.M., Brewer, E.P., Beard, H.S., Matthews, B.F. 2014. Modification of the expression of two NPR1 suppressors SNC1 and SNI1, in coybean (Glycine max) confers partial resistance to the soybean cyst nematode (Heterodera glycines). Functional Plant Biology. 41(7):714-726.
Expression of Arabidopsis genes AtNPR1 and AtTGA2 in transgenic soybean roots of composite plants confers resistance to root-knot nematode (Meloidogyne incognita) -
Youssef, R.M., Matthews, B.F. 2013. Expression of Arabidopsis genes AtNPR1 and AtTGA2 in transgenic soybean roots of composite plants confers resistance to root-knot nematode (Meloidogyne incognita). International Journal of Current Biotechnology. 1(10):15-25.
Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing -
Tremblay, A., Hosseini, P., Li, S., Alkharouf, N.W., Matthews, B.F. 2013. Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing. Biomed Central (BMC) Genomics. 14:614.
Proteomics: an efficient tool to analyze nematode proteins -
Matthews, B.F., Natarajan, S.S. 2013. Proteomics: an efficient tool to analyze nematode proteins. Journal of Plant Production Science. 3(2):61-64.
Dynamic proteome analysis of roots of soybean compatible and incompatible to Heterodera glycines -
Chen, X., Garrett, W.M., Macdonald, M.H., Khan, F.H., Matthews, B.F., Natarajan, S.S. 2013. Dynamic proteome analysis of roots of soybean compatible and incompatible to Heterodera glycines. Current Protemics. 10:278-291.
Gene expression study of phakopsoara pachyrzhiz-glycine max in interaction in susceptible plant using next generation sequencing -
Tremblay, A., Hosseini, P., Alkharouf, N.W., Li, S., Matthews, B.F. 2011. Gene expression study of phakopsoara pachyrzhiz-glycine max in interaction in susceptible plant using next generation sequencing. Sequencing. doi:10.1155/2011/827250.
The expression of a naturally occuriing truncated allele of an alpha-SNAP gene suppresses plant parasitic nematode infection -
Matsye, P.D., Lawrence, G.W., Youssef, R., Kim, K., Matthews, B.F., Klink, V.P. 2012. Functional analysis of a naturally occurring mutant of an alpha soluble NSF attachment protein gene residing within the RHG1 locus. Plant Molecular Biology. 79:1-25.
Gene expression in leaves of susceptible Glycine max during infection with Phakopsora pachyrhizi using Next-Generation sequencing Reprint Icon -
Tremblay, A., Hosseini, P., Alkharouf, N.W., Li, S., Matthews, B.F. 2011. Gene expression in leaves of susceptible Glycine max during infection with Phakopsora pachyrhizi using Next-Generation sequencing. Sequencing. doi:10.1155/2011/827250.
Evaluation of protein extraction methods suitable for two-dimensional gel electrophoresis of the soybean cyst nematode (Heterodera glycines) -
Chen, X., Macdonald, M.H., Garrett, W.M., Matthews, B.F., Natarajan, S.S. 2011. Evaluation of protein extraction methods suitable for two-dimensional gel electrophoresis of the soybean cyst nematode (Heterodera glycines). Analytical Biochemistry. 41(2):240-247.
Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines -
Xi, C., Macdonald, M.H., Khan, F.H., Garrett, W.M., Matthews, B.F., Natarajan, S.S. 2011. Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines. Proteomics. 11(24):4742-4746.
Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves -
Tremblay, A., Hosseini, P., Li, S., Alkharouf, N., Matthews, B.F. 2011. Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves. Plant Pathology. 60:1-14.
Mapping cell fate decisions that occur during soybean defense responses -
Matsye, P.D., Kumar, R., Hosseini, P., Jones, C.M., Alkharouf, N.W., Matthews, B.F., Klink, V.P. 2011. Mapping cell fate decisions that occur during soybean defense responses. Plant Molecular Biology. 77:513-528.
Proteomic analysis of soybean cyst nematode -
Natarajan, S.S., Matthews, B.F. 2011. Proteomic analysis of soybean cyst nematode. Journal of Plant Protection Research. 2(2):77-79.
Using Illumina mRNA-Sequencing to understand Glycine max-Phakopsora pachyhrizi interaction -
Using a next generation sequencing strategy to understand Glycine max-Phakopsora pachyhrizi interaction -
Discovery of new soybean and soybean rust genes using next generation sequencing -
Overexpression of the MAP kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.) -
Lee, S., Kim, B., Kwon, T., Jeong, M., Park, S., Lee, J., Byun, M., Kwon, H., Matthews, B.F., Hong, C., Park, S. 2011. Overexpression of the MAP kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.). Journal of Bioscience and Bioengineering. 36:139-151.
Differences in gene expression occurring between the rapid and potent localized resistant soybean cv Peking as compared to PI 88788 in response to rust -
Klink, V.P., Hosseini, P., Matsye, P.D., Alkharouf, N.W., Matthews, B.F. 2010. Differences in gene expression occurring between the rapid and potent localized resistant soybean cv Peking as compared to PI 88788 in response to rust. Plant Molecular Biology. 75:141-165.
Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402) -
Klink, V.P., Hosseini, P., Matsye, P.D., Alkharouf, N.W., Matthews, B.F. 2012. Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402). Plant Molecular Biology. 75:141-165.
An efficient annotation and gene expression derivation tool for Illumina Solexa datasets Reprint Icon -
Hosseini, P., Tremblay, A., Matthews, B.F., Alkharouf, N. 2010. An efficient annotation and gene expression derivation tool for Illumina Solexa datasets. Biomed Central (BMC) Genomics. 3:183.
Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection -
Tremblay, A., Hosseini, P., Alkharouf, N., Li, S., Matthews, B.F. 2010. Transcriptome Analysis of a Compatible Response by Glycine max to Phakopsora pachyrhizi Infection. Plant Science. 179:183-193.
Microarray detection calls as a means to compare transcripts within syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines) -
Klink, V.P., Overall, C.C., Alkharouf, N.W., Macdonald, M.H., Matthews, B.F. 2010. Microarray detection calls as a means to compare transcripts within syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines). Journal of Biomedicine and Biotechnology. 2010(2010):Article ID 491217 30 pages.
Post-transcriptional gene silencing of root knot-nematode in transformed soybean roots -
Ibrahim, H., Alkharouf, N., Meyer, S.L., Sanad, M., El-Din, A., Hussein, E., Matthews, B.F. 2010. Post-transcriptional gene silencing of root knot-nematode in transformed soybean roots. Experimental Parasitology. 127:90-99.
Differing responses to carbon dioxide enrichment by a dwarf and a normal-sized soybean cultivar may depend on sink capacity Reprint Icon -
Sicher Jr, R.C., Bunce, J.A., Matthews, B.F. 2010. Differing responses to carbon dioxide enrichment by a dwarf and a normal-sized soybean cultivar may depend on sink capacity. Canadian Journal of Plant Science. 90:257-264.
Syncytium gene expression in Glycine max [PI88788} roots undergoing a resistant reaction of the parasitic nematode Heterodera glycines -
Klink, V., Houssein, P., Matsye, P., Alkharouf, N., Matthews, B.F. 2010. An expression analysis of syncytia isolated from the roots of the Glycine max (soybean) genotype PI 88788 undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode). Plant Physiology and Biochemistry. 48:176-193.
A gene expression analysis of syncytia isolated from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode) -
Klink, V., Housseini, P., Matsye, P., Alkharouf, N., Matthews, B.F. 2009. A gene expression analysis of syncytia isolated from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode). Plant Molecular Biology. 71:525-567.
Emerging approaches to broaden the resistance of soybean to the soybean cyst nematode -
Klink, V., Matthews, B.F. 2009. Emerging approaches to broaden the resistance of soybean to the soybean cyst nematode. Plant Physiology. 151:1017-1022.
Laser capture microdissection and expressed sequence tag analysis of uredinia formed by Phakopsora pachyrhizi, the causal agent of Asian soybean rust -
Tremblay, A., Li, S., Scheffler, B.E., Matthews, B.F. 2009. Laser capture microdissection (LCM) and expressed sequence tag analysis of uredinia formed by Phakopsora pachyrhizi, the causal agent of Asian soybean rust. Physiological and Molecular Plant Pathology. 73(6):163-174.
Laser capture microdissection, a new technique to collect specific cells -
Tremblay, A., Matthews, B.F. 2009. Laser capture microdissection, a new technique to collect specific cells. Extension Magazine. 4:4
Population-specific gene expression in the pathogenic nematode Hederodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of Glycine max. -
Klink, V.P., Hosseini, P., Macdonald, M.H., Alkharouf, N.W., Matthews, B.F. 2009. Population-specific gene expression in the pathogenic nematode Hederodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of Glycine max. Biomed Central (BMC) Genomics. 10:111. http://www.biomedcentral.com/1471-2164/10/111.
Protease inhibitor expression in soybean roots exhibiting susceptible and resistance reactions to soybean cyst nematode -
Nahed, R., Macdonald, M.H., Matthews, B.F. 2008. Protease inhibitor expression in soybean roots exhibiting susceptible and resistance reactions to soybean cyst nematode. Journal of Nematology. 40:138-146.
Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases -
Choi, J.J., Alkharouf, N.W., Schneider, K., Matthews, B.F., Frederick, R.D. 2008. Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases. Functional and Integrative Genomics. 8:341-359
Understanding Cold Tolerance in Blueberry Using EST Libraries, cDNA Microarrays, and Subtractive Hybridization -
Rowland, L.J., Dhanaraj, A.L., Naik, D., Alkharouf, N., Matthews, B.F., Arora, R. 2008. Understanding Cold Tolerance in Blueberry Using EST Libraries, cDNA Microarrays, and Subtractive Hybridization. HortScience. 43:1975-1981.
MiniMax, a new diminutive Glycine max genotype with a rapid life cycle, embryonic potential and transformation capabilities -
Klink, V.P., Macdonald, M.H., Martins, V., Park, S., Kim, K., Baek, S., Matthews, B.F. 2007. MiniMax, a new diminutive Glycine max genotype with a rapid life cycle, embryonic potential and transformation capabilities. Plant Cell Tissue And Organ Culture. 92:183-195.
Glycine max (soybean) roots and syncytia isolated by laser capture microdissection (LCM) exhibit differential gene expression -
Klink, V.P., Matthews, B.F. 2007. Glycine max (soybean) roots and syncytia isolated by laser capture microdissection (LCM) exhibit differential gene expression. Plant Signaling and Behavior. 3(2):105-107.
A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection -
Klink, V.P., Overall, C., Macdonald, M.H., Matthews, B.F. 2007. A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection. Planta. 226:1423-1447.
Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean roots infected by soybean cyst nematode (Heterodera glycines) -
Klink, V.P., Overall, C.C., Aklharouf, N.W., Macdonald, M.H., Matthews, B.F. 2007. Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean roots infected by soybean cyst nematode (Heterodera glycines). Planta. 226:1389-1409.
IDENTIFICATION OF SOYBEAN CYST NEMATODE, HETERODERA GLYCINES, DNA SEQUENCES WITH HIGH SIMILARITY TO THOSE OF CAENORHABDITIS ELEGANS WITH MUTANT LETHAL PHENOTYPES -
Alkharouf, N., Klink, V.P., Matthews, B.F. 2007. Identification of soybean cyst nematode, heterodera glycines, dna sequences with high similarity to those of caenorhabditis elegans with mutant lethal phenotypes. Experimental Parasitology. 115:247-258.
Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max -
Klink, V.P., Matthews, B.F. 2007. Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max. Gene Regulation and Systems Biology. 2:1-17.
Understanding Cold Tolerance in Blueberry Using EST Libraries and cDNA Microarrays and Subtractive Hybridization -
Rowland, L.J., Dhanaraj, A.L., Naik, D., Alkharouf, N., Matthews, B.F., Arora, R. 2007. Understanding Cold Tolerance in Blueberry Using EST Libraries and cDNA Microarrays and Subtractive Hybridization. HortScience, v. 42, p. 822
BBGD: AN ONLINE DATABASE FOR BLUEBERRY GENOMIC DATA. -
Alkharouf, N.W., Dhanaraj, A.L., Naik, D., Overall, C., Matthews, B.F., Rowland, L.J. 2007. Bbgd: an online database for blueberry genomic data.. Biomed Central (BMC) Plant Biology. 7:05.
A decline in transcript abundance for Heterodera glycines homolog Caenorhabditis elegans uncoordinated genes accompanies its sedentary parasitic phase. -
Martins, V., Klink, V.P., Alkharouf, N., Macdonald, M.H., Matthews, B.F. 2006. A decline in transcript abundance for Heterodera glycines homolog Caenorhabditis elegans uncoordinated genes accompanies its sedentary parasitic phase.. BioMed Central Developmental Biology. 7(35):1-11.
GENE EXPRESSION PROFILES DURING COLD ACCLIMATION IN BLUEBERRY UNDER FIELD AND COLD ROOM CONDITIONS USING CDNA MICROARRAYS -
Dhanaraj, A.L., Alfharouf, N.W., Beard, H.S., Chouikha, I.B., Matthews, B.F., Wei, H., Arora, R., Rowland, L.J. 2006. Gene expression profiles during cold acclimation in blueberry under field and cold room conditions using cdna microarrays. Planta. DOI10.1007/s00425-006-0382-1. 225:735-751.
BROADENING RESISTANCE OF SOYBEAN TO THE SOYBEAN CYST NEMATODE USING BIOTECHNOLOGY -
Matthews, B.F., Klink, V.P., Alkharouf, N. 2006. Broadening resistance of soybean to the soybean cyst nematode using biotechnology. Meeting Proceedings. 3rd Congreso de Soja del Mercousur, June 24, 2006 - July 4, 2006, Rosairo, Argentina. p. 6-9.
ISOLATION OF A PATHOGENESIS RELATED GENE (PR GENE) USING LASER CAPTURE MICRODISSECTION OF GLYCINE MAX (SOYBEAN) SYNCYTIA -
Klink, V.P., Macdonald, M.H., Matthews, B.F. 2006. Isolation of a pathogenesis related gene (pr gene) using laser capture microdissection of glycine max (soybean) syncytia [abstract]. BARC Poster Day. Paper No. 24.
MICROARRAY ANALYSIS OF GENES EXPRESSED IN RPPL-MEDIATED RESISTANCE TO ASIAN SOYBEAN RUST -
Schneider, K., Choi, J.J., Alkharouf, N.W., Lum, N.L., Munroe, D.J., Matthews, B.F., Frederick, R.D. 2006. Microarray analysis of genes expressed in rppl-mediated resistance to asian soybean rust. American Phytopathological Society 96:S104
GENE EXPRESSION PROFILES DURING COLD ACCLIMATION IN BLUEBERRY USING CDNA MICROARRAYS. -
Dhanaraj, A.L., Alkharouf, N., Beard, H.S., Chouikha, I.B., Matthews, B.F., Wei, H., Arora, R., Rowland, L.J. 2006. Gene expression profiles during cold acclimation in blueberry using cdna microarrays.. Proceedings from "Functional Genomics of Model Organisms to Crop Plants for Global Health". April 3-5, 2006, Washington, D.C. p.39.
ISOLATION OF GENES USING LASER CAPTURE MICRODISSECTION OF GLYCINE MAX (SOYBEAN) SYNCYTIA FORMED BY THE PLANT PATHOGEN HETERODERA GLYCINES, (SOYBEAN CYST NEMATODE). -
Klink, V.P., Macdonald, M.H., Alkharouf, N., Matthews, B.F. 2005. Isolation of genes using laser capture microdissection of glycine max (soybean) syncytia formed by the plant pathogen heterodera glycines, (soybean cyst nematode) [abstract]. Cambridge Healthtech Institute Laser Capture Microdissection: Cutting Edge Applications. Paper No. 219.
ISOLATION AND CHARACTERIZATION OF THE SOYBEAN CYST NEMATODE (HETERODERA GLYCINES) HOMOLOG OF CAENORHABDITIS ELEGANS UNC-97 GENE. -
Martins, V., Klink, V.P., Alkharouf, N., Macdonald, M.H., Matthews, B.F. 2005. Isolation and characterization of the soybean cyst nematode (heterodera glycines) homolog of caenorhabditis elegans unc-97 gene [abstract]. Mid Atlantic Plant Molecular Biology Society Conference. p. 13. .
IDENTIFICATION OF SOYBEAN CYST NEMATODE LETHAL GENES USING COMPUTATIONAL METHODS -
Alkharouf, N., Klink, V.P., Matthews, B.F. 2005. Identification of soybean cyst nematode lethal genes using computational methods [abstract]. Mid Atlantic Plant Molecular Biology Society Conference. Paper No. 24.
GENE EXPRESSION CHANGES IN SOYBEAN AFTER INFECTION WITH SOYBEAN RUST (PHAKOPSORA PACHYRHIZI). -
Alkharouf, N., Choi, J.J., Frederick, R.D., Matthews, B.F. 2005. Gene expression changes in soybean after infection with soybean rust (phakopsora pachyrhizi) [abstract]. BARC Poster Day. Paper No. 09.
ISOLATION OF AN AQUAPORIN (GMPIP2,2) USING LASER CAPTURE MICRODISSECTION OF GLYCINE MAX (SOYBEAN) SYNCYTIA FORMED BY THE PLANT PATHOGEN HETERODERA GLYCINES, (SOYBEAN CYST NEMATODE). -
Klink, V.P., Macdonald, M.H., Alkharouf, N., Matthews, B.F. 2005. Isolation of an aquaporin (gmpip2,2) using laser capture microdissection of glycine max (soybean) syncytia formed by the plant pathogen heterodera glycines, (soybean cyst nematode) [abstract]. BARC Poster Day. Paper No. 17.
MONITORING GENE EXPRESSION PROFILES DURING COLD ACCLIMATION IN BLUEBERRY UNDER FIELD AND COLD ROOM CONDITIONS USING CDNA MICROARRAYS -
Dhanaraj, A., Alkharouf, N., Beard, H.S., Ben Chouikha, I., Matthews, B.F., Rowland, L.J. 2005. Monitoring gene expression profiles during cold acclimation in blueberry under field and cold room conditions using cdna microarrays. In Vitro Biology. 41:38-A.
GENOME POLYMORPHISM IDENTIFIES A SUBTILISIN-LIKE PROTEASE NEAR THE RHG4 LOCUS IN SOYBEAN -
Nelsen, N., Li, Z., Warner, A., Matthews, B.F. 2004. Genome polymorphism identifies a subtilisin-like protease near the rhg4 locus in soybean. Crop Science 44: 264-273.
PRELIMINARY STUDIES ON MICROARRAY ANALYSIS OF GENE EXPRESSION DURING COLD ACCLIMATION IN BLUEBERRY. -
Dhanaraj, A., Alkharouf, N.W., Beard, H.S., Ben Chouikha, I., Matthews, B.F., Rowland, L.J. 2004. Preliminary studies on microarray analysis of gene expression during cold acclimation in blueberry.. Meeting Abstract. p. 35
MOLECULAR CHARACTERIZATION OF A SOYBEAN CYST NEMATODE HOMOLOGY OF UNC-87. -
Matthews, B.F., Pilitt, K.L., Klink, V.P. 2004. Molecular characterization of a soybean cyst nematode homology of unc-87. Journal of Nematology 36: 457-465.
RESISTANCE MECHANISMS IN SOYBEAN: GENE EXPRESSION PROFILE AT AN EARLY STAGE OF SOYBEAN CYST NEMATODE INVASION -
Khan, R., Alkharouf, N., Beard, H.S., Knap, H., Meyer, S.L., Chouikha, I., Greffenstette, J., Matthews, B.F. 2004. Resistance mechanisms in soybean: gene expression profile at an early stage of soybean cyst nematode invasion. J. Nematol. 36: 241-248.
IDENTIFICATION OF RESISTANT GENES AND PATHWAYS IN SOYBEAN AGAINST THE CYST NEMATODE USING BIOINFORMATICS AND DATA MINING TOOLS -
Alkharouf, N., Matthews, B.F. 2004. Identification of resistant genes and pathways in soybean against the cyst nematode using bioinformatics and data mining tools [abstract]. BARC Poster Day. Abstract #06.
LASER CAPTURE MICROSCOPY ISOLATION OF SYNCYTIAL CELLS FROM HETERODERA GLYCINES FEEDING SITES AND EST ANALYSIS -
Klink, V.P., Macdonald, M.H., Alkharouf, N., Matthews, B.F. 2004. Laser capture microscopy isolation of syncytial cells from heterodera glycines feeding sites and est analysis. Meeting Proceedings. Cambridge Healthtech Institute. P.6.
SGMD: THE SOYBEAN GENOMICS AND MICROARRAY DATABASE. -
Alkharouf, N., Matthews, B.F. 2003. Sgmd: the soybean genomics and microarray database.. Nucleic Acids Research. 32:D398-D400.
ANALYSIS OF EXPRESSED SEQUENCE TAGS FROM ROOTS OF RESISTATNT SOYBEAN INFECTED BY THE SOYBEAN CYST NEMATODE. -
Alkharouf, N., Khan, R., Matthews, B.F. 2003. Analysis of expressed sequence tags from roots of resistatnt soybean infected by the soybean cyst nematode [abstract]. Mid Atlantic Plant Molecular Biology Society Conference . p. 30.
ALTERATIONS OF GENE EXPRESSION AND METABOLITE LEVELS IN SOYBEAN ROOTS DURING INVASION BY THE SOYBEAN CYST NEMATODE -
Matthews, B.F., Khan, R., Alkharouf, N., Sumner, L.W. 2003. Alterations of gene expression and metabolite levels in soybean roots during invasion by the soybean cyst nematode [abstract]. Mid Atlantic Plant Molecular Biology Society Conference. p.13.
MOLECULAR CHARACTERIZATION OF ARGININE KINASES IN THE SOYBEAN CYST NEMATODE (HETERODERA GLYCINES). -
Matthews, B.F., Tucker, M.L., Macdonald, M.H., Thai, V.K. 2003. Molecular characterization of arginine kinases in the soybean cyst nematode (heterodera glycines).. Journal of Nematology. 35:252-258.
MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4 -
MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4 -
Hofmann, N.E., Arelli, P.R., Matthews, B.F., Quigley, C.V., Cregan, P.B. 2002. Molecular beacons to select for scn resistance at rhg1 and rhg4. Biennial Conference on Molecular and Cellular Biology of the Soybean. P. 211.
ASCARIS SUUM: CDNA MICROARRAY ANALYSIS OF 4TH STAGE LARVAE (L4) DURING SELF-CURE FROM THE INTESTINE -
Morimoto, M., Zarlenga, D.S., Beard, H.S., Alkharouf, N., Matthews, B.F., Urban Jr, J.F. 2003. Ascaris suum: cdna microarray analysis of 4th stage larvae (l4) during self-cure from the intestine. Experimental Parasitology. 104:113-121 (2003)
MICROARRAY ANALYSIS OF GENE EXPRESSION IN SOYBEAN ROOTS -
ANALYSIS OF DNA MICROARRAY DATA -
FUNCTIONAL ANNOTATION OF THE GENOMIC REGION SURROUNDING THE RHG4 LOCUS IN SOYBEAN PI 437.654 -
MICROARRAY ANALYSIS OF GENE EXPRESSION IN SOYBEAN RESISTANT OR SUSCEPTIBLE TO SOYBEAN CYST NEMATODE -
REGULATION OF PHYTOCHEMICALS BY MOLECULAR TECHNIQUES -
MAP BASED CLONING OF A SOYBEAN CYSTNEMATODE RESISTANCE GENE -
COMPARISON OF RESISTANT AND SUSCEPTIBLE SOYBEAN GENOMES -
STRATEGY FOR ISOLATION OF A SOYBEAN GENE -
GENOMIC EXPRESSION PROFILING IN SOYBEAN PLANTS -
SMGD: THE SOYBEAN GENOMICS AND MICROARRAY DATABASE -
MICROARRAY ANALYSIS OF GENE EXPRESSION IN SOYBEAN PLANTS -
A PHYSICAL MAP OF A GENE-DENSE REGION IN SOYBEAN -
GENE EXPRESSION PROFILING IN SOYBEAN PLANTS RESISTANT OR SUSCEPTIBLE TO SOYBEAN CYST NEMATODE (SCN) USING MICROARRAY ANALYSIS. -
MICROARRAYS: APPLICATION TO SOYBEAN GENE EXPRESSION DURING SOYBEAN CYST NEMATODE INVASION -
MAP-BASED CLONING OF A SOYBEAN CYST NEMATODE RESISTANCE GENE -
USE OF FTA FOR RAPID PCR SCREENING OF PLANT SAMPLES -
DETECTION OF PLANT GENES USING A RAPID, NON-ORGANIC DNA ISOLATION METHOD -
GENES EXPRESSED BY SOYBEAN IN RESPONSE TO THE SOYBEAN CYST NEMATODE -
INCORPORATION OF SEQUENCED CDNA AND GENOMIC MARKERS INTO THE SOYBEAN MAP -
EXPRESSION OF GENENS INVOLVED IN THE RESISTANCE OF SOYBEAN TO SCN -
GENOMIC EXPRESSION PROFILING IN SOYBEAN PLANTS RESISTANT OR SUSCEPTIBLE TO SOYBEAN CYST NEMATODE (SCN) -
COMPARISON OF RESISTANT AND SUSCEPTIBLE GENOMES NEAR A SOYBEAN CYST NEMATODE RESISTANCE GENE -
CHARACTERIZATION OF EST IN A SOYBEAN AMPLIFIED OF CDNA LIBRARY AND A SOYBEAN NORMALIZED CDNA LIBRARY -
PLANT TRANSFORMATION BY GENE TRANSFER INTO POLLEN -
IDENTIFICATION AND EXPRESSION OF A CDNA ENCODING CYSTATHIONINE GAMMA SYNTHOSE -
ISOLATION AND CHARACTERIZATION OF A CDNA ENCODING A MONOFUNCTIONAL ASPARTOKINASE FROM SOYBEAN -
USING CDNA ARRAYS TO EXAMINE THE RESPONSE OF SOYBEAN TO SCN -
EXAMINATION OF THE TRANSCRIPTION OF A MONOFUNCTIONAL ASPARTOKINASE IN SOYBEAN SEEDLINGS -
DETECTION OF PLANT GENES USING A RAPID, NON-ORGANIC GENOMIC DNA ISOLATION METHOD -
DETECTION OF PLANT GENES USING A RAPID METHOD -
CDNA ARRAY REPRESENTING GENES EXPRESSED BY SOYBEAN -
TARGETED ISOLATION OF SIMPLE SEQUENCE REPEAT MARKERS THROUGH THE USE OF BACTERIAL ARTIFICIAL CHROMOSOMES -
DETECTION OF A CASCADE OF DIFFERENTIALLY EXPRESSED GENES -
PURIFICATION AND PRELIMINARY CHARACTERIZATION OF THE SOYBEAN GLYOXYSOMAL ASPARTATE AMINOTRANSFERASE ISOZYME -
GENETIC MAPPING OF THE SOYBEAN GENE RJ4, CONDITIONING NODULATION RESTRICTION WITH BRADYRHIZOBIUM ELKANII, A CHLOROSIS-INDUCING MICROSYMBIONT, WITH MOLECULAR MARKER LOCI -
CLONING & EXPRESSION OF TWO SOYBEAN GENES ENCODING SIMILAR ASPARTOKINASE- HOMESERINE DEHYDROGENASE ISOFORMS -
DIFFERENTIALLY EXPRESSED GENES OF SOYBEAN IN RESPONSE TO INVASION BY THE THE SOYBEAN CYST NEMATODE -
DIFFERENTIALLY EXPRESSED GENES INDUCED IN RESISTANT SOYBEAN PLANTS IN RESPONSE TO SOYBEAN CYST NEMATODE, HEDERODERA GLYCINES, INVASION -
PCR MARKERS RESIDING CLOSE TO THE RHG4 LOCUS CONFERRING RESISTANCE TO SOYBEAN CYST NEMATHODE RACE 3 ON LINKAGE GROUP A OF SOYBEAN -
MOLECULAR MARKERS FOR RESISTANCE TO MULTIPLE RACES OF SOYBEAN CYST NEMATODE(SCN) AS APPLIED TO ADVANCED GERMPLASM -
LYSINE THREONINE AND METHIONINE BIOSYNTHESIS -
DIFFERENTIAL GENE EXPRESSION IN RESPONSE TO SOYBEAN CYST NEMATODE, HETERODERA GLYCINES, INFECTION -
RAPID ASSAY OF MOLECULAR MARKERS CLOSELY LINKED TO THE RHG4 LOCUS IMPARTINGRESISTANCE TO SOYBEAN CYST NEMATODE RACE 3 -
ARS News Articles
Last Modified: 5/2/2016
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