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United States Department of Agriculture

Agricultural Research Service

Related Topics

David Needleman
Office of The Director
Molecular Biologist

Phone: (215) 233-6627
Fax: (215) 233-6581
Room 0107

600 E. MERMAID LANE
ERRC
WYNDMOOR , PA 190388598


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Editorial: Emerging approaches for typing, detection, characterization, and traceback of Escherichia coli -
Fratamico, P.M., Debroy, C., Needleman, D.S. 2016. Editorial: Emerging approaches for typing, detection, characterization, and traceback of Escherichia coli. Frontiers in Microbiology. DOI.org/10.3389/fmicb.2016.02089.
Mycorrhizal fungi collected from the rhizospheres around different olive cultivars vary in their ability to improve growth and polyphenol levels in leeks Reprint Icon -
Malik, N.S., Nunez, A., Mckeever, L., Kunta, M., Douds, D.D., Needleman, D.S. 2016. Mycorrhizal fungi collected from the rhizospheres around different olive cultivars vary in their ability to improve growth and polyphenol levels in leeks. Journal of Agricultural Science. 8:1-10.
Advances in genoserotyping and subtyping of Escherichia coli -
Fratamico, P.M., Debroy, C., Liu, Y., Needleman, D.S., Baranzoni, G., Feng, P. 2016. Advances in genoserotyping and subtyping of Escherichia coli. Frontiers in Microbiology. 7:644.
Comparison of O-antigen gene clusters of all O-serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-typing -
Needleman, D.S., Debroy, C., Fratamico, P.M., Yan, X., Baranzoni, G., Liu, Y., Tebbs, R., O'Connell, C.D., Allred, A., Swimley, M., Mwangi, M., Kapur, V., Garay, J., Roberts, E.L., Katani, R. 2016. Comparison of O-antigen gene clusters of all O-serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-typing. Meeting Abstract. [abstract] Association of Biomolecular Resources Facilities Meeting.
Comparison of O-Antigen gene clusters of all O-Serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-Typing -
Debroy, C., Fratamico, P.M., Yan, X., Baranzoni, G., Liu, Y., Needleman, D.S., Tebbs, R., O'Connell, C.D., Allred, A., Swimley, M., Mwangi, M., Kapur, V., Raygoza Garay, J., Katani, R., Roberts, E.L. 2016. Comparison of O-Antigen gene clusters of all O-Serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-Typing. PLoS One. DOI:10.1371/journal.pone.0147434.
Complete genome sequence of Campylobacter jejuni RM1285 a rod-shaped morphological variant -
Gunther, N.W., Bono, J.L., Needleman, D.S. 2015. Complete genome sequence of Campylobacter jejuni RM1285 a rod-shaped morphological variant. Genome Announcements. doi: 10.1128/genomeA.01361-15.
Escherichia coli O-antigen gene clusters of serogroups O62, O68, O131, O140, O142, and O163: DNA sequences and similarity between O62 and O68, and PCR-based serogrouping -
Liu, Y., Fratamico, P.M., Debroy, C., Yan, X., Needleman, D.S., Li, R.W., Wang, W., Losada, L., Brinkac, L., Radune, D., Toro, M., Meng, J. 2015. Escherichia coli O-antigen gene clusters of serogroups O62, O68, O131, O140, O142, and O163: DNA sequences and similarity between O62 and O68, and PCR-based serogrouping. Biosensors. 5:51-68.
Complete genome sequence of the larval shellfish pathogen Vibrio Tubiashii type strain ATCC 19109 -
Richards, G.P., Needleman, D.S., Watson, M.A., Bono, J.L. 2014. Complete genome sequence of the larval shellfish pathogen Vibrio Tubiashii type strain ATCC 19109. Genome Announcements. 2(6); e01252-14. DOI: 10.1128/genomeA01252-14.
Mortalities of eastern and pacific oyster larvae caused by the pathogens Vibrio coralliilyticus and Vibrio tubiashii -
Richards, G.P., Watson, M.A., Needleman, D.S., Church, K.M., Hase, C.C. 2014. Mortalities of eastern and pacific oyster larvae caused by the pathogens Vibrio coralliilyticus and Vibrio tubiashii. Applied and Environmental Microbiology. 81:292-297.
Complete genome sequence for the shellfish pathogen Vibrio coralliilyticus RE98 isolated from a shellfish hatchery -
Richards, G.P., Bono, J.L., Watson, M.A., Needleman, D.S. 2014. Complete genome sequence for the shellfish pathogen Vibrio coralliilyticus RE98 isolated from a shellfish hatchery. Genome Announcements. DOI:10.1128/genomeA.01253-14.
DNA sequence and analysis of the O-antigen gene clusters of Escherichia coli serogroups O62, O68, O131, O140, O142, and O163 and serogroup-specific PCR assays -
Liu, Y., Fratamico, P.M., Debroy, C., Yan, X., Needleman, D.S., Li, R.W., Wang, W., Losada, L., Brinkac, L., Rodune, D., Toro, M., Meng, J. 2014. DNA sequence and analysis of the O-antigen gene clusters of Escherichia coli serogroups O62, O68, O131, O140, O142, and O163 and serogroup-specific PCR assays. Meeting Abstract. March 22-25, 2014.
Cloning, sequencing and characterization of lipase genes from a polyhydroxyalkanoate- (PHA-) synthesizing Pseudomonas resinovorans Reprint Icon -
Lee, J.H., Ashby, R.D., Needleman, D.S., Lee, K., Solaiman, D. 2012. Cloning, sequencing and characterization of lipase genes from a polyhydroxyalkanoate- (PHA-) synthesizing Pseudomonas resinovorans. Applied Microbiology and Biotechnology. DOI: 10.1007/s00253-012-4133-x.
DNA sequence and analysis of a 90.1 kb virulence plasmid in shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75 -
Yan, X., Fratamico, P.M., Needleman, D.S., Bayles, D.O. 2012. DNA sequence and analysis of a 90.1 kb virulence plasmid in shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75. Plasmid Journal. 68:25-32.
The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30 Reprint Icon -
Fratamico, P.M., Yan, X., Caprioli, A., Esposito, G., Needleman, D.S., Pepe, T., Tozzoli, R., Cortesi, M.L., Morabito, S. 2011. The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30. Journal of Medical Microbiology. 301:192-203.
Gyr B versus 16s rDNA sequencing for the identification of Campylobacter jejuni, Campylobacter coli, and Campylobacter lari -
Gunther, N.W., Almond, J.T., Yan, X., Needleman, D.S. 2011. Gyr B versus 16s rDNA sequencing for the identification of Campylobacter jejuni, Campylobacter coli, and Campylobacter lari. Journal of Nucleic Acids Investigation. DOI: 101089/fpd.2010.0773.
From ontology selection and semantic web to the integrated information system of food-borne diseases and food safety -
Yan, X., Peng, Y., Meng, J., Rusante, J., Fratamico, P.M., Huang, L., Juneja, V.K., Needleman, D.S. 2011. From ontology selection and semantic web to the integrated information system of food-borne diseases and food safety. Software Tools and Algorithms for Biological Systems. 26-34.
Improved efficiency in amplification of Escherichia coli o-antigen gene clusters using genome-wide sequence comparison -
Broiler Contamination and Human campylobacteriosis in Iceland -
Callicott, K., Haroardottir, H., Georgsson, F., Reiersen, J., Frioriksdottir, V., Gunnarsson, E., Michel, P., Bisaillon, J., Kristinsson, K.G., Briem, H., Hiett, K.L., Needleman, D.S., Stern, N.J. 2008. Broiler Contamination and Human campylobacteriosis in Iceland. Applied and Environmental Microbiology. 74(21):6483-6494.
Broiler Contamination and Human Campylobacteriosis in Iceland -
Callicott, K., Haroardottir, H., Georgsson, F., Reiersen, J., Frioriksdotir, V., Hiett, K.L., Gunnarsson, E., Michel, P., Kristinsson, K., Briem, H., Kristinsson, K., Needleman, D.S., Stern, N.J. 2007. Broiler Contamination and Human Campylobacteriosis in Iceland. Campylobacter Helicobacter and Related Organisms International Workshop.
LACK OF EVIDENCE FOR VERTICLE TRANSMISSION OF CAMPYLOBACTER SPP. IN CHICKENS -
Callicott, K., Fridriksdottir, V., Reiersen, J., Lowman, R., Bisaillon, J., Gunnarsson, E., Berndtson, E., Hiett, K.L., Needleman, D.S., Stern, N.J. 2006. Lack of evidence for verticle transmission of campylobacter spp. in chickens. Applied and Environmental Microbiology. 72(9):5794-5798.
Last Modified: 5/2/2016
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