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United States Department of Agriculture

Agricultural Research Service

Related Topics

Yanhong Liu
Molecular Characterization of Foodborne Pathogens Research
Microbiology

Phone: (215) 233-6587
Fax: (215) 233-6581
Room 2100.2

600 E MERMAID LN
WYNDMOOR , PA 190388598

Projects
Molecular Characterization of Foodborne Pathogen Responses to Stress
Appropriated (D)
  Accession Number: 430258
FOOD SAFETY & QUALITY, APPLICATION OF NOVEL TECHNOLOGIES & UTILIZATION OF WASTE POMACE FROM FRUIT & VEGETABLE PROCESSING - COLLABORATIVE RES
Nonfunded Cooperative Agreement (N)
  Accession Number: 422849

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
A systems biology approach to investigate the antimicrobial activity of oleuropein -
Advances in genoserotyping and subtyping of Escherichia coli -
Fratamico, P.M., Debroy, C., Liu, Y., Needleman, D.S., Baranzoni, G., Feng, P. 2016. Advances in genoserotyping and subtyping of Escherichia coli. Frontiers in Microbiology. 7:644.
Comparison of O-antigen gene clusters of all O-serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-typing -
Needleman, D.S., Debroy, C., Fratamico, P.M., Yan, X., Baranzoni, G., Liu, Y., Tebbs, R., O'Connell, C.D., Allred, A., Swimley, M., Mwangi, M., Kapur, V., Garay, J., Roberts, E.L., Katani, R. 2016. Comparison of O-antigen gene clusters of all O-serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-typing. Meeting Abstract. [abstract] Association of Biomolecular Resources Facilities Meeting.
Comparison of O-Antigen gene clusters of all O-Serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-Typing -
Debroy, C., Fratamico, P.M., Yan, X., Baranzoni, G., Liu, Y., Needleman, D.S., Tebbs, R., O'Connell, C.D., Allred, A., Swimley, M., Mwangi, M., Kapur, V., Raygoza Garay, J., Katani, R., Roberts, E.L. 2016. Comparison of O-Antigen gene clusters of all O-Serogroups of Escherichia coli and proposal for adopting a new nomenclature for O-Typing. PLoS One. DOI:10.1371/journal.pone.0147434.
Effects of stresses on the growth and Cytotoxicity of Shiga-Toxin producing Escherichia coli in ground beef and spinach -
Yoo, B.K., Liu, Y., Juneja, V.K., Huang, L., Hwang, C. 2016. Effects of stresses on the growth and Cytotoxicity of Shiga-Toxin producing Escherichia coli in ground beef and spinach. Journal of Food Science and Technology. 1:1-7.
Prevalence and antimicrobial susceptibility of Vibrio parahaemolyticus isolated from retail shellfish in Shanghai -
Yu, Q., Niu, M., Yu, M., Liu, Y., Wang, D., Shi, X. 2016. Prevalence and antimicrobial susceptibility of Vibrio parahaemolyticus isolated from retail shellfish in Shanghai. Food Control. 60:263-268.
A comparison of in-house real-time LAMP assays with a commercial assay for the detection of pathogenic bacteria -
Wang, D., Wang, Y., Xiao, F., Guo, W., Zhang, Y., Wang, A., Liu, Y. 2015. A comparison of in-house real-time LAMP assays with a commercial assay for the detection of pathogenic bacteria. Molecules. 20(6):9487-9495.
Development of primer sets for loop-mediated isothermal amplification that enables rapid and specific detection of Streptococcus dysgalactiae, Streptococcus uberis and Streptococcus agalactiae Reprint Icon -
Wang, D., Liu, Y. 2015. Development of primer sets for loop-mediated isothermal amplification that enables rapid and specific detection of Streptococcus dysgalactiae, Streptococcus uberis and Streptococcus agalactiae. International Journal of Environmental Research and Public Health. 12(6):5735-5742.
Growth characteristics of Shiga toxin-producing Escherichia coli (STEC) stressed by chlorine, sodium chloride, acid, and starvation on lettuce and cantaloupe Reprint Icon -
Yoo, B.K., Liu, Y., Juneja, V.K., Huang, L., Hwang, C. 2015. Growth characteristics of Shiga toxin-producing Escherichia coli (STEC) stressed by chlorine, sodium chloride, acid, and starvation on lettuce and cantaloupe. Food Control. 55:97-102.
Escherichia coli O-antigen gene clusters of serogroups O62, O68, O131, O140, O142, and O163: DNA sequences and similarity between O62 and O68, and PCR-based serogrouping -
Liu, Y., Fratamico, P.M., Debroy, C., Yan, X., Needleman, D.S., Li, R.W., Wang, W., Losada, L., Brinkac, L., Radune, D., Toro, M., Meng, J. 2015. Escherichia coli O-antigen gene clusters of serogroups O62, O68, O131, O140, O142, and O163: DNA sequences and similarity between O62 and O68, and PCR-based serogrouping. Biosensors. 5:51-68.
Impact of sod on the expression of stress-related genes in Listeria monocytogenes 4b G with/without paraquat treatment -
Suo, Y., Liu, Y., Zhou, X., Huang, Y., Shi, C., Matthews, K., Shi, X. 2014. Impact of sod on the expression of stress-related genes in Listeria monocytogenes 4b G with/without paraquat treatment. Journal of Food Science. 79(9):1745-1749.
Comparison of different methods for isolation of bacterial DNA from retail oyster tissues -
Zhang, Q., Dai, M., Liu, Y., Zhou, M., Shi, X., Wang, D. 2014. Comparison of different methods for isolation of bacterial DNA from retail oyster tissues. Journal of Microbial and Biochemical Technology. 6(4):212-216.
DNA sequence and analysis of the O-antigen gene clusters of Escherichia coli serogroups O62, O68, O131, O140, O142, and O163 and serogroup-specific PCR assays -
Liu, Y., Fratamico, P.M., Debroy, C., Yan, X., Needleman, D.S., Li, R.W., Wang, W., Losada, L., Brinkac, L., Rodune, D., Toro, M., Meng, J. 2014. DNA sequence and analysis of the O-antigen gene clusters of Escherichia coli serogroups O62, O68, O131, O140, O142, and O163 and serogroup-specific PCR assays. Meeting Abstract. March 22-25, 2014.
Non-labeled quantitative proteomic comparison identifies differences in acid resistance between Escherichia coli O157:H7 curli production variants Reprint Icon -
Gunther, N.W., Liu, Y., Nunez, A., Paul, M., Uhlich, G.A. 2014. Non-labeled quantitative proteomic comparison identifies differences in acid resistance between Escherichia coli O157:H7 curli production variants. Foodborne Pathogens and Disease. 11:30-37.
Construction of Listeria monocytogenes mutants with in-frame Deletions in the phosphotransferase transport system (PTS) and analysis of their growth under stress conditions -
Liu, Y. 2013. Construction of Listeria monocytogenes mutants with in-frame Deletions in the phosphotransferase transport system (PTS) and analysis of their growth under stress conditions. Meeting Abstract. pp.6-7.
Construction of Listeria monocytogenes mutants with in-frame deletions in the Phosphotransferase Transport System (PTS) and analysis of their growth under stress conditions Reprint Icon -
Liu, Y., Ceruso, M., Jiang, Y., Datta, A.R., Carter, L., Strain, E., Pepe, T., Anastasi, A., Fratamico, P.M. 2013. Construction of Listeria monocytogenes mutants with in-frame deletions in the Phosphotransferase Transport System (PTS) and analysis of their growth under stress conditions. Journal of Food Science. 78:1392-1398.
Gene expression profiling of a nisin-sensitive Listeria monocytogenes Scott A CtsR deletion mutant -
Liu, Y., Morgan, S.L., Ream, A.R., Huang, L. 2012. Gene expression profiling of a nisin-sensitive Listeria monocytogenes Scott A CtsR deletion mutant. Journal of Industrial Microbiology and Biotechnology. 40(5):495-505.
How does Listeria monocytogenes combat acid conditions? -
Smith, J.L., Liu, Y., Paoli, G. 2012. How does Listeria monocytogenes combat acid conditions?. Canadian Journal of Microbiology. 59:141-152.
Construction of Listeria monocytogenes mutants with in-frame deletions in putative ATP-binding cassette (ABC) transporters and analysis of their growth under stress conditions Reprint Icon -
Liu, Y., Ceruso, M., Pepe, T., Cortesi, M., Gunther, N.W., Fratamico, P.M. 2012. Construction of Listeria monocytogenes mutants with in-frame deletions in putative ATP-binding cassette (ABC) transporters and analysis of their growth under stress conditions. Journal of Microbial and Biochemical Technology. 4(7):141-146.
Fermentation optimization and antioxidant activities of mycelial polysaccharides from Morchella esculenta using soybean residues Reprint Icon -
Gang, J., Fang, Y., Wang, Z., Liu, Y. 2013. Fermentation optimization and antioxidant activities of mycelial polysaccharides from Morchella esculenta using soybean residues. African Journal of Biotechnology. 12(11):1239-1249.
The expression of superoxide dismutase (SOD) and a putative ABC transporter permease is inversely correlated during biofilm formation in Listeria monocytogenes 4b G -
Suo, Y., Huang, Y., Liu, Y., Shi, C., Shi, X. 2012. The expression of superoxide dismutase (SOD) and a putative ABC transporter permease is inversely correlated during biofilm formation in Listeria monocytogenes 4b G. PLoS One. 7:e48467.
Growth kinetics of Listeria monocytogenes and spoilage microorganisms in fresh-cut cantaloupe -
Fang, T., Liu, Y., Huang, L. 2013. Growth kinetics of Listeria monocytogenes and spoilage microorganisms in fresh-cut cantaloupe. Food Microbiology. http://dx.doi.org/10.1016/j.fm.2012.12.05.
Detection of foodborne pathogens using microarray technology -
Purification, characterization and decolorization of bilirubin oxidase from Myrothecium verrucaria 3.2190 Reprint Icon -
Han, X., Zhao, M., Lu, L., Liu, Y. 2012. Purification, characterization and decolorization of bilirubin oxidase from Myrothecium verrucaria 3.2190. Fungal Biology. 116(8):863-871.
Inactivation of L. innocua, S. Typhimurium, and E. coli O157:H7 on surface and stem scar areas of tomatoes using in-package ozonation Reprint Icon -
Fan, X., Sokorai, K.J., Engemann, J., Gurtler, J., Liu, Y. 2012. Inactivation of L. innocua, S. Typhimurium, and E. coli O157:H7 on surface and stem scar areas of tomatoes using in-package ozonation. Journal of Food Protection. 75:1611-1618.
Genes that are involved in high hydrostatic pressure treatments in a Listeria monocytogenes Scott A ctsR deletion mutant Reprint Icon -
Liu, Y., Huang, L., Joerger, R.D., Gunther, N.W. 2012. Genes that are involved in high hydrostatic pressure treatments in a Listeria monocytogenes Scott A ctsR deletion mutant. Journal of Microbial and Biochemical Technology. 4:050-056.
pH fractionation and identification of proteins: comparing column isoelectric focusing vs liquid based focusing techniques -
Gunther, N.W., Paul, M., Nunez, A., Liu, Y. 2012. pH fractionation and identification of proteins: comparing column isoelectric focusing vs liquid based focusing techniques. Journal of Separation Science. 35(12):1399-1406.
Challenges of microarray applications for microbial detection and gene expression profiling in food -
Liu, Y. 2011. Challenges of microarray applications for microbial detection and gene expression profiling in food. Journal of Microbial and Biochemical Technology. Available: http://dx.doi.org/10.4172/1948-5948.S2-001.
Gene expression profiling of a pressure-tolerant Listeria monocytogenes Scott A CtsR deletion mutant -
Liu, Y., Ream, A.R., Joerger, R.D., Liu, J., Wang, Y. 2011. Gene expression profiling of a pressure-tolerant Listeria monocytogenes Scott A CtsR deletion mutant. Journal of Industrial Microbiology and Biotechnology. DOI 10.1007/s10295-011-0940-9.
Detection by multiplex real-time PCR assays and isolation of Shiga toxin-producing Escherichia coli serogroups O26, O45, O103, O111, O121, and O145 in ground beef -
Fratamico, P.M., Bagi, L.K., Cray Jr, W.C., Narang, N., Medina, M.B., Liu, Y. 2011. Detection by multiplex real-time PCR assays and isolation of Shiga toxin-producing Escherichia coli serogroups O26, O45, O103, O111, O121, and O145 in ground beef. Foodborne Pathogens and Disease. DOI: 10.1089=fpd.2010.0773.
The structural characterization of the O-polysaccharide antigen in the lipopolysaccharide of Escherichia coli serotype O118 and its relationship to the O-antigens of Salmonella enterica O47 and Escherichia coli serotype O151 -
Maclean, L.L., Liu, Y., Perry, M.B. 2010. The structural characterization of the O-polysaccharide antigen in the lipopolysaccharide of Escherichia coli serotype O118 and its relationship to the O-antigens of Salmonella enterica O47 and Escherichia coli serotype O151. Carbohydrate Research. 345:2664-2669.
Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR -
Fratamico, P.M., Yan, X., Debroy, C., Bryne, B., Monaghan, A., Liu, Y., Bolton, D., Fanning, S. 2010. Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR. Canadian Journal of Microbiology. 56:308-316.
PCR Detection of Enterohemorrhagic Escherichia coli O145 in Food by Targeting Genes in the E. coli O145 O-Antigen Gene Cluster and the Shiga Toxin 1 and Shiga Toxin 2 Genes -
Fratamico, P.M., Debroy, C., Miyamoto, T., Liu, Y. 2009. PCR Detection of Enterohemorrhagic Escherichia coli O145 in Food by Targeting Genes in the E. coli O145 O-Antigen Gene Cluster and the Shiga Toxin 1 and Shiga Toxin 2 Genes. Foodborne Pathogens and Disease. 6(5):605-611.
Sporulation and germination gene expression analysis of Bacillus anthracis Sterne spores in skim milk under heat and different intervention techniques -
Liu, Y., Ream, A.R. 2009. Sporulation and germination gene expression analysis of Bacillus anthracis Sterne spores in skim milk under heat and different intervention techniques. Journal of Food Science and Technology. 74(3):120-124.
Gene Expression Profiling of Listeria Monocytogenes Strain F365 during Growth in Ultrahigh-Temperature-Processed Skim Milk -
Liu, Y., Ream, A.R. 2008. Gene Expression Profiling of Listeria Monocytogenes Strain F365 during Growth in Ultrahigh-Temperature-Processed Skim Milk. Applied and Environmental Microbiology. 74(22):6859-6866.
Sequencing of the Escherichia coli O22 O Antigen Gene Cluster and Detection of E. coli Serogroups O22 and O91 by Multiplex PCR Assays Targeting Virulence Genes and the wzy Gene in the Respective O-Antigen Gene Clusters -
Fratamico, P.M., Liu, Y., Debroy, C. 2009. Sequencing of the Escherichia coli O22 O Antigen Gene Cluster and Detection of E. coli Serogroups O22 and O91 by Multiplex PCR Assays Targeting Virulence Genes and the wzy Gene in the Respective O-Antigen Gene Clusters. Journal of Food Analytical Methods. 2:169-179.
A Retail Survey of Brazilian Milk and Minas Frescal Cheese, and a Contaminated Dairy Plant, To Establish The Prevalence, Relatedness, and Sources of Listeria monocytogenes -
Brito, J.R., Santos, E.M., Oliveira, M.M., Arcuri, E.F., Lange, C.C., Brito, M.A., Souza, G.N., Beltran, J.M., Call, J.E., Liu, Y., Porto Fett, A.C., Luchansky, J.B. 2008. A retail survey of brazilian milk and minas frescal cheese, and a contaminated dairy plant, to establish the prevalence, relatedness, and sources of listeria monocytogenes. Applied and Environmental Microbiology. Vol.74, No.15. pg 4954-4961.
Gene expression profiling of Listeria monocytogenes strain F2365 in UHT pasteurized skim milk -
Liu, Y. 2008. Gene expression profiling of Listeria monocytogenes strain F2365 in UHT pasteurized skim milk. Meeting Abstract. P23.
DNA SEQUENCING, ANALYSIS, AND IDENTIFICATION OF SEROGROUP-SPECIFIC GENES IN THE ESCHERICHIA COLI O28AC AND O118 O ANTIGEN GENE CLUSTERS -
Liu, Y., Fratamico, P.M., Debroy, C., Bumbaugh, A., Allen, J. 2008. DNA SEQUENCING, ANALYSIS, AND IDENTIFICATION OF SEROGROUP-SPECIFIC GENES IN THE ESCHERICHIA COLI O28AC AND O118 O ANTIGEN GENE CLUSTERS. Foodborne Pathogens and Disease. 5(4):449-457.
Molecular Characterization of the Escherichia coli Serogroup O117, O126, and O146 O Antigen Gene Clusters and Development of PCR Assays Targeting Serogroup O117-, O126-, and O146-Specific DNA Sequences -
Liu, Y., Debroy, C., Fratamico, P.M. 2007. Molecular Characterization of the Escherichia coli Serogroup O117, O126, and O146 O Antigen Gene Clusters and Development of PCR Assays Targeting Serogroup O117-, O126-, and O146-Specific DNA Sequences. Molecular and Cellular Probes. 21:295-302.
Diagnostic Methods for Food-Borne Pathogen Detection and Antimicrobial Resistance -
Liu, Y. 2006. Diagnostic Methods for Food-Borne Pathogen Detection and Antimicrobial Resistance. Meeting Abstract. S02. pg. 62.
ESCHERICHIA COLI O ANTIGEN TYPING USING DNA MICROARRAYS -
Liu, Y., Fratamico, P.M. 2006. Escherichia coli o antigen typing using dna microarrays. {Abstract}. International Association of Food Protection. P3-54.
E. COLI O ANTIGEN TYPING USING DNA MICROARRAYS -
Liu, Y., Fratamico, P.M. 2006. E. coli o antigen typing using dna microarrays. Molecular and Cellular Probes. 2006. 20:239-244.
CHARACTERIZATION, TYPING, AND DETECTION OF PATHOGENIC ESCHERICHIA COLI -
Fratamico, P.M., Uhlich, G.A., Liu, Y. 2005. Characterization, typing, and detection of pathogenic escherichia coli. UJNR Food & Agricultural Panel Proceedings.
DETECTION OF ENTEROHEMORRHAGIC ESCHERICHIA COLI 0145 BY PCR TARGETING GENES IN THE E. COLI 0145 ANTIGEN GENE CLUSTER AND THE SHIGA TOXIN 1 AND SHIGA TOXIN 2 GENES -
Fratamico, P.M., Debroy, C., Miyamoto, T., Liu, Y. 2005. Detection of Enterohemorrhagic Escherichia Coli 0145 by PCR Targeting Genes in the E. Coli 0145 Antigen Gene Cluster and the Shiga Toxin 1 and Shiga Toxin 2 Genes. Association of Official Analytical Chemists. Abstract. Paper # P-611.
PCR ASSAYS FOR DETECTION AND IDENTIFICATION OF ESCHERICHIA COLI SEROGROUPS O45 AND O55 TARGETING THE WZX AND WZY GENES IN THE O ANTIGEN GENE CLUSTERS -
Debroy, C., Fratamico, P.M., Briggs, C.E., Kundrat, J., Roberts, E., Liu, Y., Davis, M. 2005. Pcr assays for detection and identification of Escherichia coli serogroups O45 and O55 targeting the wzx and wzy genes in the O antigen gene clusters. Applied and Environmental Microbiology. v. 71. p. 4919-4924.
NUCLEIC ACID-BASED METHODS FOR DETECTION AND ANALYSIS OF FOODBORNE PATHOGENS -
Fratamico, P.M., Bagi, L.K., Liu, Y., Miyamoto, T. 2004. Nucleic acid-based methods for detection and analysis of foodborne pathogens. United States Japan Natural Resources Protein Panel. p. 348-353.
NUCLEIC ACID-BASED DIAGNOSTIC METHODOLOGIES -
Liu, Y., Fratamico, P.M. 2004. Nucleic acid-based diagnostic methodologies. Book Chapter. Paper No. 6-TECH.
NUCLEIC ACID-BASED DIAGNOSTIC METHODS -
Liu, Y., Fratamico, P.M. 2004. Nucleic acid-based diagnostic methods. Meeting Abstract. P.AGFD168.
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Last Modified: 5/2/2016
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