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United States Department of Agriculture

Agricultural Research Service

Related Topics

Shiaoman Chao
Cereal Crops Research
Genetics

Phone: (701) 239-1462
Fax: (701) 239-1445

USDA,ARS,BRL
1605 ALBRECHT BLVD N
FARGO , ND 581022765

Projects
Genetic Improvement of Durum and Spring Wheat for Quality and Resistance to Diseases and Pests
In-House Appropriated (D)
  Accession Number: 424595
Enriching and Understanding the Wheat Genome by Inducing Homoeologous Recombination
Reimbursable Cooperative Agreement (R)
  Accession Number: 425718
Use of High Throughput Genotyping Systems to Detect Markers Associated with Agronomic Traits in Durum Wheat
Non-Assistance Cooperative Agreement (S)
  Accession Number: 427234
Genomic Analysis of Tan Spot Resistance in Wheat
Non-Assistance Cooperative Agreement (S)
  Accession Number: 431353

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Evaluation of genetic diversity and host resistance to stem rust in durum wheat accessions from the USDA National Small Grains Collection -
Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P.teres f. teres isolates -
Koladia, V.M., Faris, J.D., Richards, J.K., Brueggeman, R.S., Chao, S., Friesen, T.L. 2016. Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P.teres f. teres isolates. Theoretical and Applied Genetics. doi: 10.1007/s00122-016-2801-4.
Genomic analysis of a novel gene conferring resistance to Ug99 stem rust in Triticum turgidum ssp. dicoccum -
Saini, J., Xu, S.S., Rouse, M.N., Chao, S., Long, Y., Mcclean, P., Faris, J.D. 2016. Genomic analysis of a novel gene conferring resistance to Ug99 stem rust in Triticum turgidum ssp. dicoccum [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.
Genetic mapping of resistance to the Ug99 race group of Puccinia graminis f. sp tritici in a spring wheat landrace CItr 4311 -
Babiker, E.M., Gordon, T.C., Chao, S., Rouse, M.N., Brown Guedira, G.L., Pretorius, Z.A., Wanyera, R., Newcomb, M., Bonman, J.M. 2016. Genetic mapping of resistance to the Ug99 race group of Puccinia graminis f. sp tritici in a spring wheat landrace CItr 4311. Theoretical and Applied Genetics. 129(11):2161-2170.
Population structure and genotype-phenotype associations in a collection of oat landraces and historic cultivars. -
Winkler, L., Bonman, J.M., Chao, S., Yimer, B.A., Bockelman, H.E., Esvelt Klos, K.L. 2016. Population structure and genotype-phenotype associations in a collection of oat landraces and historic cultivars. Frontiers in Plant Science. doi: 10.3389/fpls.2016.01077.
Population genetics related to adaptation in elite oat germplasm -
Esvelt Klos, K.L., Huang, Y., Babiker, E.M., Beattie, A., Bekele, W.A., Bjornstad, A., Bonman, J.M., Carson, M.L., Chao, S., Gnanesh, B.N., Harrison, S.A., Howarth, C.J., Hu, G., Ibrahim, A., Islamovic, E., Jackson, E.W., Jannink, J., Kolb, F.L., Mcmullen, M.S., Fetch, J.M., Murphy, J., Obert, D.E., Ohm, H.W., Rines, H.W., Rossnagel, B., Schuleter, J.A., Wight, C.P., Yan, W., Tinker, N.A. 2016. Population genetics related to adaptation in elite oat germplasm. The Plant Genome. 9(2):1-12. doi: 10.3835/plantgenome2015.10.0103.
Cluster analysis of historical and modern hard red spring wheat cultivars based on parentage and HPLC of gluten protein -
Malalgoda, M., Ohm, J., Meinhardt, S., Chao, S., Simsek, S. 2016. Cluster analysis of historical and modern hard red spring wheat cultivars based on parentage and HPLC of gluten protein. American Association of Cereal Chemists International, October 23-26, 2016, Savannah, GA. Available: http://www.aaccnet.org/meetings/Documents/2016Abstracts/aacc2016abs206.htm.
Markers linked to wheat stem rust resistance gene Sr11 effective to Puccinia graminis f. sp. tritici race TKTTF -
Nirmala, J.H., Chao, S., Olivera, P., Babiker, E.M., Abeyo, B., Tadesse, Z., Imtiaz, M., Talbert, L., Blake, N., Akhunov, E., Pumphrey, M.O., Jin, Y., Rouse, M.N. 2016. Markers linked to wheat stem rust resistance gene Sr11 effective to Puccinia graminis f. sp. tritici race TKTTF. Phytopathology. 106(11):1352-1358.
Genome-wide association mapping of barley yellow dwarf virus tolerance in spring oat (Avena sativa L.) Reprint Icon -
Foresman, B.J., Oliver, R.E., Jackson, E.W., Chao, S., Arruda, M.P., Kolb, F.L. 2016. Genome-wide association mapping of barley yellow dwarf virus tolerance in spring oat (Avena sativa L.). PLoS ONE. 11(5):e0155376. doi: 10.1371/journal.pone.0155376.
Fine mapping of the barley chromosome 6H net form net blotch susceptibility locus Reprint Icon -
Richards, J., Chao, S., Friesen, T.L., Brueggeman, R. 2016. Fine mapping of the barley chromosome 6H net form net blotch susceptibility locus. G3. 6:1809-1818. doi: 10.1534/g3.116.028902.
Genetic architecture of resistance to stripe rust in a global winter wheat germplasm collection -
Bulli, P., Zhang, J., Chao, S., Chen, X., Pumphrey, M. 2016. Genetic architecture of resistance to stripe rust in a global winter wheat germplasm collection. G3, Genes/Genomes/Genetics. doi: 10.1534/g3.116.028407.
Genome Wide Association Analysis of Leaf Rust Response in a Worldwide Germplasm Collection of Durum Wheat -
A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial sub-genome rearrangement -
Chaffin, A.S., Huang, Y., Smith, S., Bekele, W.A., Babiker, E.M., Gnanesh, B.N., Foresman, B.J., Blanchard, S.G., Jay, J.J., Reid, R.W., Wight, C.P., Chao, S., Oliver, R., Islamovic, E., Kolb, F.L., Mccartney, C., Mitchell Fetch, J.W., Beattie, A.D., Bjornstad, A., Bonman, J.M., Langdon, T., Howarth, C.J., Brouwer, C.R., Jellen, E.N., Esvelt Klos, K.L., Poland, J., Hsieh, T., Brown, R., Jackson, E., Schlueter, J.A., Tinker, N.A. 2016. A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial sub-genome rearrangement. The Plant Genome. 9(2). doi: 10.3835/plantgenome2015.10.0102.
Genome wide association study of seedling and adult plant leaf rust resistance in elite spring wheat breeding lines Reprint Icon -
Gao, L., Turner, M.K., Chao, S., Kolmer, J., Anderson, J.A. 2016. Genome wide association study of seedling and adult plant leaf rust resistance in elite spring wheat breeding lines. PLoS ONE. 11(2):e0148671.
Single nucleotide polymorphism tightly linked to a major QTL on chromosome 7A for both kernel length and kernel weight in wheat Reprint Icon -
Su, Z., Jin, S., Yue, L., Zhang, G., Chao, S., Bai, G. 2016. Single nucleotide polymorphism tightly linked to a major QTL on chromosome 7A for both kernel length and kernel weight in wheat. Molecular Breeding. 36: 15. doi:10.1007/s11032-016-0436-4.
Single nucleotide polymorphisms linked to quantitative trait loci for grain quality traits in wheat Reprint Icon -
Li, C., Bai, G., Carver, B., Chao, S., Wang, Z. 2015. Single nucleotide polymorphisms linked to quantitative trait loci for grain quality traits in wheat. The Crop Journal. (2016) 4: 1-11.
Introgression of a new Ug99-resistant gene from Thinopyrum junceum into wheat -
Gill, B.K., Niu, Z., Klindworth, D.L., Chao, S., Friesen, T.L., Jin, Y., Rouse, M.N., Cai, X., Xu, S.S. 2016. Introgression of a new Ug99-resistant gene from Thinopyrum junceum into wheat [abstract]. Plant and Animal Genome Conference, January 9-13, 2016, San Diego, CA.
Mapping quantitative trait loci for plant adaptation and morphology traits in wheat using single nucleotide polymorphisms Reprint Icon -
Bai, G., Li, C., Carver, B., Chao, S., Wang, Z. 2016. Mapping quantitative trait loci for plant adaptation and morphology traits in wheat using single nucleotide polymorphisms. Euphytica. 208:299-312. doi:10.1007/s10681-015-1594-x.
Development of genotyping by sequencing (GBS) and array derived SNP markers for stem rust resistance gene Sr42 Reprint Icon -
Gao, L., Kielsmeirer-Cook, J., Bajgain, P., Zhang, X., Chao, S., Rouse, M.N., Anderson, J.A. 2015. Development of genotyping by sequencing (GBS)- and array-derived SNP markers for stem rust resistance gene Sr42. Molecular Breeding. 35:207.
Genetic diversity among wheat accessions from the USDA National Small Grains Collection -
Bonman, J.M., Babiker, E.M., Cuesta-Marcos, A., Esvelt Klos, K.L., Brown Guedira, G.L., Chao, S., See, D.R., Chen, J., Akhunov, E., Zhang, J., Bockelman, H.E., Gordon, T.C. 2015. Genetic diversity among wheat accessions from the USDA National Small Grains Collection. Crop Science. 55(3):1243-1253.
A spontaneous segmental deletion from chromosome arm 3DL enhances Fusarium head blight resistance in wheat -
Garvin, D.F., Porter, H., Blankenheim, Z., Chao, S., Dill-Macky, R. 2015. A spontaneous segmental deletion from chromosome arm 3DL enhances Fusarium head blight resistance in wheat. Genome. 58(11):479-488.
Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat Reprint Icon -
Zhu, X., Zhong, S., Chao, S., Gu, Y.Q., Kianian, S.F., Elias, E., Cai, X. 2016. Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat. Theoretical and Applied Genetics. 129:31-43.
A high-density SNP and SSR consensus map reveals segregation distortion regions in wheat -
Li, C., Bai, G., Chao, S., Wang, Z. 2016. A high-density SNP and SSR consensus map reveals segregation distortion regions in wheat. BioMed Research International. doi:10.1155/2015/830618.
Genetic mapping of major-effect seed dormancy quantitative trait loci on chromosome 2B using recombinant substitution lines in tetraploid wheat Reprint Icon -
Chao, S., Elias, E., Benscher, D., Ishikawa, G., Huang, Y.-F., Saito, M., Nakamura, T., Xu, S., Faris, J., Sorrells, M. 2016. Genetic mapping of major-effect seed dormancy quantitative trait loci on chromosome 2B using recombinant substitution lines in tetraploid wheat. Crop Science. 56:59-72.
Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia Reprint Icon -
Kippes, N., Debernardi, J.M., Vasquez-Gross, H.A., Akpinar, B.A., Budak, H., Kato, K., Chao, S., Akhunov, E., Dubcovsky, J. 2015. Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. PNAS. 112(39):E5401-E5410. doi: 10.1073/pnas.1514883122.
Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome -
Munoz-Amatriain, M., Lonardi, S., Luo, M., Madishetty, K., Svensson, J., Moscou, M., Wanamaker, S., Jiang, T., Kleinhofs, A., Muehlbauer, G., Wise, R.P., Stein, N., Ma, Y., Rodriguez, E., Kudrna, D., Bartos, J., Bhat, P., Chao, S., Condamine, P., Heinen, S., Resnik, J., Wing, R., Witt, H., Alpert, M., Beccuti, M., Bozdag, S., Cordero, F., Mirebrahim, H., Ounit, R., Wu, Y., You, F., Zheng, J., Dolezel, J., Grimwood, J., Schmutz, J., Duma, D., Altschmied, L., Blake, T., Bregitzer, P.P., Cooper, L., Dilbirligi, M., Falk, A., Feiz, L., Graner, A., Gustafson, P., Hayes, P., Lemaux, P., Mammadov, J., Close, T. 2015. Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant Journal. 84(1):216-227. doi: 10.1111/tpj.12959.
Introgression of a New Stem Rust Resistance Gene from Aegilops markgrafii into Wheat -
Quantitative trait loci associated with the tocochromanol (vitamin E) pathway in barley -
Graebner, R.C., Wise, M.L., Cuesta-Marcos, A., Geniza, M., Blake, T., Blake, V.C., Butler, J., Chao, S., Hole, D.J., Horsley, R., Jaiswal, P., Obert, D., Smith, K.P., Ullrich, S., Hayes, P.M. 2015. Quantitative trait loci associated with the tocochromanol (vitamin E) pathway in barley. PLoS One. 10(7): e0133767. DOI:10.1371/journal.pone.0133767.
Rapid identification of resistance loci effective against Puccinia graminis f. sp. tritici race TTKSK in 33 spring wheat landraces -
Babiker, E.M., Bonman, J.M., Gordon, T.C., Chao, S., Rouse, M.N., Brown Guedira, G.L., Williamson, S., Pretorius, Z.A. 2016. Rapid identification of resistance loci effective against Puccinia graminis f. sp. tritici race TTKSK in 33 spring wheat landraces. Plant Disease. 100(2):331-336.
Impact of the D genome and quantitative trait loci on quantitative traits in a spring durum by spring bread wheat cross Reprint Icon -
Kalous, J.R., Martin, J.M., Sherman, J.D., Heo, H.-Y., Blake, N.K., Lanning, S.P., Eckhoff, J.L.A., Chao, S., Akhunov, E., Talbert, L.E. 2015. Impact of the D genome and quantitative trait loci on quantitative traits in a spring durum by spring bread wheat cross. Theoretical and Applied Genetics. 128:1799-1811.
Single nucleotide polymorphism markers linked to QTL for wheat yield traits -
Li, C., Bai, G., Carver, B., Chao, S., Wang, Z. 2015. Single nucleotide polymorphism markers linked to QTL for wheat yield traits. Euphytica. Published online 30 May 2015. DOI: 10.1007/s10681-015-1475-3.
Molecular mapping of YrSP and its relationship with other genes for stripe rust resistance in wheat chromosome 2BL -
Feng, J., Wang, M., Chen, X., See, D.R., Zheng, Y., Chao, S., Wan, A. 2015. Molecular mapping of YrSP and its relationship with other genes for stripe rust resistance in wheat chromosome 2BL. Phytopathology. 105(9):1206-1213.
Mapping a large number of QTL for durable resistance to stripe rust in winter wheat Druchamp using SSR and SNP markers -
Hou, L., Chen, X., Wang, M., See, D.R., Chao, S., Bulli, P., Jing, J. 2015. Mapping a large number of QTL for durable resistance to stripe rust in winter wheat Druchamp using SSR and SNP markers. PLoS One. 10(5):e0126794.
Development of genetic and genomic resources for target breeding in durum wheat -
Xu, S.S., Chao, S., Faris, J.D., Friesen, T.L., Liu, Z., Jin, Y., Rouse, M.N., Elias, E.M. 2015. Development of genetic and genomic resources for target breeding in durum wheat [abstract]. From Seed to Pasta & Beyond: A Sustainable Durum Wheat Chain for Food Security and Healthy Lives, May 31-June 3, 2015, Bologna Italy.
Association analysis of stem solidness and wheat stem sawfly resistance in a panel of North American spring wheat germplasm Reprint Icon -
Varella, A.C., Weaver, D.K., Sherman, J.D., Blake, N.K., Heo, H.Y., Kalous, J.R., Chao, S., Hofland, M.L., Martin, J.M., Kephart, K.D., Talbert, L.E. 2015. Association analysis of stem solidness and wheat stem sawfly resistance in a panel of North American spring wheat germplasm. Crop Science. 55:2046-2055.
Precisely mapping a major gene conferring resistance to Hessian fly in bread wheat using genotyping-by-sequencing Reprint Icon -
Li, G., Wang, Y., Chen, M., Edae, E.A., Poland, J.A., Akhunov, E., Chao, S., Bai, G., Carver, B.F., Yan, L. 2015. Precisely mapping a major gene conferring resistance to Hessian fly in bread wheat using genotyping-by-sequencing. Biomed Central (BMC) Genomics. 16:108. doi:10.1186/s12864-015-1297-7.
A genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a worldwide collection of hexaploid spring wheat (Triticum aestivum L.) Reprint Icon -
Macaferri, M., Zhang, J., Bulli, P., Abate, Z., Chao, S., Cantu, D., Bossolini, E., Chen, X., Pumphrey, M., Dubcovsky, J. 2015. A genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a worldwide collection of hexaploid spring wheat (Triticum aestivum L.). Genes, Genomes, and Genomics. 5(3):449-465.
Mapping resistance to the Ug99 race group of the stem rust pathogen in a spring wheat landrace -
Babiker, E.M., Bonman, J.M., Gordon, T.C., Chao, S., Newcomb, M.S., Rouse, M.N., Jin, Y., Wanyera, R., Acevedo, M., Brown Guedira, G.L., Williamson, S. 2015. Mapping resistance to the Ug99 race group of the stem rust pathogen in a spring wheat landrace. Journal of Theoretical and Applied Genetics. 128:605-612. doi:10.1007/s00122-015-2456-6.
Transgenic wheat and barley carrying a barley UDP-glucosyltransferase exhibit high levels of Fusarium head blight resistance -
Li, X., Shin, S., Heinen, S., Dill-Macky, R., Berthiller, F., Clemente, T., McCormick, S.P., Chao, S., Muehlbauer, G.J. 2014. Transgenic wheat and barley carrying a barley UDP-glucosyltransferase exhibit high levels of Fusarium head blight resistance [abstract].
Identification and mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat -
Zhang, Q., Axtman, J.E., Faris, J.D., Chao, S., Zhang, Z., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2014. Identification and mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat [abstract]. In: Canty, S., Clark, A., Turcott, N., Van Sanford, D., editors. Proceedings of the National Fusarium Head Blight Forum, East Lansing, MI/Lexington, KY: U.S. Wheat & Barley Scab Initiative, December 7-9, 2014, St. Louis, MO. p. 102.
A genome-wide association study of malting quality across eight U.S. barley breeding programs Reprint Icon -
Mohammadi, M., Blake, T.K., Budde, A.D., Chao, S., Hayes, P.M., Horsley, R.D., Obert, D.E., Ullrich, S.E., Smith, K.P. 2015. A genome-wide association study of malting quality across eight U.S. barley breeding programs. Theoretical and Applied Genetics. 128:705-721.
Genome-wide association mapping of susceptibility to Stagonospora nodorum blotch in emmer wheat -
Sun, Q., Chao, S., Friesen, T.L., Faris, J.D., Xu, S.S. 2015. Genome-wide association mapping of susceptibility to Stagonospora nodorum blotch in emmer wheat. Plant & Animal Genome XXIII, January 10-14, 2015, San Diego, CA. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper16321.html.
Targeted introgression of stem rust Ug99 resistance from wheatgrasses into pasta and bread wheat -
Xu, S.S., Friesen, T.L., Chao, S., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2015. Targeted introgression of stem rust Ug99 resistance from wheatgrasses into pasta and bread wheat [abstract]. Plant & Animal Genome XXIII, January 10-14, 2015, San Diego, CA. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper14596.html.
Identification and molecular mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat using a single nucleotide polymorphism-based linkage map Reprint Icon -
Zhang, Q., Axtman, J.E., Faris, J.D., Chao, S., Zhang, Z., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2014. Identification and molecular mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat using a single nucleotide polymorphism-based linkage map. Molecular Breeding. 34:1677-1687.
Analysis of agronomic and domestication traits in a durum x cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map Reprint Icon -
Faris, J.D., Zhang, Q., Chao, S., Zhang, Z., Xu, S.S. 2014. Analysis of agronomic and domestication traits in a durum x cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map. Theoretical and Applied Genetics. 127:2333-2348.
Quantitative trait loci from two genotypes of oat (Avena sativa L.) conditioning resistance to Puccinia coronata Reprint Icon -
Babiker, E.M., Gordon, T.C., Obert, D.E., Jackson, E.W., Harrison, S.A., Chao, S., Carson, M.L., Bonman, J.M. 2015. Quantitative trait loci from two genotypes of oat (Avena sativa L.) conditioning resistance to Puccinia coronata. Phytopathology. 105(2):239-245.
Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H Reprint Icon -
Liu, Z., Holmes, D.J., Faris, J.D., Chao, S., Brueggeman, R., Edwards, M.C., Friesen, T.L. 2015. Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H. Molecular Plant Pathology. 16(2):188-200.
Construction of dense linkage maps "on the fly" using early generation wheat breeding populations -
Eckard, J., Gonzales-Hernandez, J., Chao, S., St Amand, P., Bai, G. 2014. Construction of dense linkage maps "on the fly" using early generation wheat breeding populations. Molecular Breeding. DOI:10.1007/s11032-014-0116-1.
A SNP genotyping array for hexaploid oat Reprint Icon -
Tinker, N.A., Chao, S., Lazo, G.R., Oliver, R.E., Huang, Y.-F., Poland, J.A., Jellen, E.N., Maughan, P.J., Kilian, A., Jackson, E.W. 2014. A SNP genotyping array for hexaploid oat. The Plant Genome. 7(3). doi: 10.3835/plantgenome2014.03.0010
Characterization of Sr9h, a Ug99-resistant allele of wheat stem rust resistance gene Sr9, and coupling to Sr28 on chromosome arm 2BL -
Rouse, M.N., Nirmala, J.H., Jin, Y., Chao, S., Fetch, T.G., Pretorius, Z., Hiebert, C. 2014. Characterization of Sr9h, a Ug99-resistant allele of wheat stem rust resistance gene Sr9, and coupling to Sr28 on chromosome arm 2BL. Journal of Theoretical and Applied Genetics. 127:1681-1688.
Association mapping of grain hardness, polyphenol oxidase, total phenolics, amylose content, and ß-glucan in US barley breeding germplasm Reprint Icon -
Mohammadi, M., Endelman, J.B., Nair, S., Chao, S., Jones, S.S., Muehlbauer, G.J., Ullrich, S.E., Baik, B.-K., Wise, M.L., Smith, K.P. 2014. Association mapping of grain hardness, polyphenol oxidase, total phenolics, amylose content, and ß-glucan in US barley breeding germplasm. Molecular Breeding. 34:1229-1243.
Mapping of Yr62 and a small effect QTL for high-temperature adult-plant resistance to stripe rust in spring wheat PI 192252 Reprint Icon -
Lu, Y., Wang, M., Chen, X., See, D.R., Chao, S., Jing, J. 2014. Mapping of Yr62 and a small effect QTL for high-temperature adult-plant resistance to stripe rust in spring wheat PI 192252. Theoretical and Applied Genetics. 127:1449-1459.
Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley Reprint Icon -
Oliver, R.E., Islamovic, E., Obert, D.E., Wise, M.L., Herrin, L.L., Hang, A., Harrison, S.A., Ibrahim, A., Marshall, J.M., Miclaus, K.J., Lazo, G.R., Chao, S., Hu, G., Jackson, E. 2014. Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley. PLoS One. 9:e96276.
Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication Reprint Icon -
Faris, J.D., Zhang, Z., Chao, S. 2014. Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication. Gene. 542:198-208.
The USDA collection of barley landraces and cultivars: genetic diversity, population structure, and potential for genome-wide association studies -
Munoz-Amatrian, M., Cuesta-Marcos, A., Endelman, J.B., Comadran, J., Bonman, J.M., Bockelman, H.E., Chao, S., Russell, J., Waugh, R., Hayes, P.M., Muehlbauer, G.J. 2014. The USDA collection of barley landraces and cultivars: genetic diversity, population structure, and potential for genome-wide association studies. PLoS One. 9(4):394688. doi:10.137/journal.pone.0094688.
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array Reprint Icon -
Wang, S., Wong, D., Forrest, K., Allen, A., Chao, S., Huang, B.E., Maccaferri, M., Salvi, S., Milner, S.G., Cattivelli, L., Mastrangelo, A.M., Whan, A., Stephen, S., Barker, G., Wieseke, R., Plieske, J., International Wheat Genome Sequencing Consortium, Lillemo, M., Mather, D., Appels, R., Dulferos, R., Brown-Guedira, G., Korol, A., Akhunova, A.R., Feuillet, C., Salse, J., Morgante, M., Pozniak, C., Luo, M.-C., Dvorak, J., Morell, M., Dubcovsky, J., Ganal, M., Tuberosa, R., Lawley, C., Mikoulitch, I., Cavanagh, C., Edwards, K.J., Hayden, M., Akhunov, E. 2014. Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal. 12:787-796.
Genome-wide association analysis identified SNPs closely linked to a gene resistant to Soil-borne wheat mosaic virus -
Liu, S., Yang, X., Zhang, D., Bai, G., Chao, S., Bockus, W. 2014. Genome-wide association analysis identified SNPs closely linked to a gene resistant to Soil-borne wheat mosaic virus. Theoretical and Applied Genetics. 127:1039-1047.
Development and characterization of wheat lines carrying stem rust resistance gene Sr43 derived from Thinopyrum ponticum Reprint Icon -
Niu, Z., Klindworth, D.L., Yu, G., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Ohm, J.-B., Rasmussen, J.B., Xu, S.S. 2014. Development and characterization of wheat lines carrying stem rust resistance gene Sr43 derived from Thinopyrum ponticum. Theoretical and Applied Genetics. 127:969-980.
Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population Reprint Icon -
Islamovic, E., Obert, D., Budde, A.D., Schmitt, M., Brunick II, R., Kilian, A., Chao, S., Lazo, G.R., Marshall, J., Jellen, E., Maughan, P., Hu, G., Esvelt Klos, K.L., Brown, R., Jackson, E. 2014. Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population. Molecular Breeding. DOI: 10.1007/s11032-014-0017-3.
Genetic analysis and molecular mapping of crown rust resistance in common wheat Reprint Icon -
Niu, Z., Puri, K.D., Chao, S., Jin, Y., Sun, Y., Steffenson, B.J., Maan, S.S., Xu, S.S., Zhong, S. 2013. Genetic analysis and molecular mapping of crown rust resistance in common wheat. Theoretical and Applied Genetics. 127:609-619.
Association mapping of resistance to leaf rust in emmer wheat using high throughput SNP markers -
Sun, Q., Elias, E., Chao, S., Xu, S.S., Acevedo, M. 2014. Association mapping of resistance to leaf rust in emmer wheat using high throughput SNP markers [abstract]. Borlaug Summit on Wheat for Food Security, March 25-28, 2014, Ciudad Obregon, Mexico. p. 116.
A genomic comparison of homoeologous recombinants of the Lr19 (T4) translocation in wheat Reprint Icon -
Somo, M., Chao, S., Acevedo, M., Zurn, J., Cai, X., Marais, F. 2014. A genomic comparison of homoeologous recombinants of the Lr19 (T4) translocation in wheat. Crop Science. 54:565-575.
Chromosome engineering for alien gene introgression in wheat: Progress and prospective -
Xu, S.S., Niu, Z., Klindworth, D.L., Zhang, Q.J., Chao, S., Friesen, T.L., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2013. Chromosome engineering for alien gene introgression in wheat: Progress and prospective. Triticeae Cytogenetics: Past, Present and Future, September 15-16, 2013, Kyoto, Japan. p. 24-25.
A new genetic linkage map of barley (Hordeum vulgare L.) facilitates genetic dissection of height and spike length and angle Reprint Icon -
Islamovic, E., Obert, D.E., Oliver, R., Marshall, J.M., Miclaus, K.J., Hang, A., Chao, S., Lazo, G.R., Harrison, S.A., Ibrahim, A., Jellen, E.N., Maughan, P.J., Brown, R.H., Jackson, E.W. 2013. A new genetic linkage map of barley (Hordeum vulgare L.) facilitates genetic dissection of height and spike length and angle. Field Crops Research. 154:91-99.
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landrace and cultivars Reprint Icon -
Cavanagh, C., Chao, S., Wang, S., Huang, B.E., Stephan, S., Kiani, S., Forrest, K., Saintenac, C., Brown Guedira, G.L., Akhunova, A., See, D.R., Bai, G., Pumphrey, M.O., Tomar, L., Wong, D., Kong, S., Reynolds, M., Lopez Da Silva, M., Bockelman, H.E., Talbert, L., Anderson, J.A., Dreisigacker, S., Baenziger, S., Carter, A., Korzun, V., Morrell, P.L., Dubcovsky, J., Morell, M., Sorrells, M., Hayden, M., Akhunov, E. 2013. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landrace and cultivars. Proceedings of the National Academy of Sciences. 110:8057-8062.
Use of the Illumina GoldenGate assay for single nucleotide polymorphism (SNP) genotyping in cereal crops -
Chao, S., Lawley, C. 2015. Use of the Illumina GoldenGate assay for single nucleotide polymorphism (SNP) genotyping in cereal crops. In: Batley, J., editor. Plant Genotyping: Methods and Protocols, Methods in Molecular Biology. Volume 1245. New York, NY: Springer Science+Business Media. p. 299-312. doi: 10.1007/978-1-4939-1966-6.
SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species -
Oliver, R.E., Tinker, N.A., Lazo, G.R., Chao, S., Jellen, E.N., Carson, M.L., Rines, H.W., Obert, D., Lutz, J.D., Shackelford, I., Korol, A.B., Wight, C., Gardner, K.M., Hattori, J., Beattie, A., Bjornstad, A., Bonman, J.M., Jannink, J., Mitchell Fetch, J.W., Harrison, S., Howarth, C.J., Ibrahim, A., Kolb, F.L., McMullen, M.S., Murphy, J.P., Ohm, H., Rossnagel, B.G., Yan, W., Miclaus, K.J., Hiller, J., Maughan, P.J., Redman-Hulse, R.R., Anderson, J.M., Islamovic, E., Jackson, E.W. 2013. SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS One. 8:e58068.
The art of attrition: development of robust oat microsatellites -
The hordeum toolbox - the barley CAP genotype and phenotype resource -
Blake, V.C., Kling, J.G., Hayes, P.M., Jannink, J., Jillella, S.R., Lee, J., Matthews, D.E., Chao, S., Close, T.J., Muehlbauer, G.J., Smith, K.P., Wise, R.P., Dickerson, J.A. 2012. The hordeum toolbox - the barley CAP genotype and phenotype resource. The Plant Genome. DOI: 10.385/plantgenome2012.03.0002.
Genetics and mapping of stem rust resistance in MV Zelma winter wheat -
Nava, I.C., Rouse, M.N., Chao, S., Jin, Y., Anderson, J.A. 2012. Genetics and mapping of stem rust resistance in MV Zelma winter wheat. Meeting Abstract. In: 2012 BGRI Proceedings ToC.
Identification of a novel gene, H34, in wheat using recombinant inbred lines and single nucleotide polymorphism markers Reprint Icon -
Li, C., Chen, M., Chao, S., Yu, J., Bai, G. 2012. Identification of a novel gene, H34, in wheat using recombinant inbred lines and single nucleotide polymorphism markers. Theoretical and Applied Genetics. 126:2065-2017.
Genetic mapping analysis of bread-making quality traits in spring wheat Reprint Icon -
Simons, K., Anderson, J.A., Mergoum, M., Faris, J.D., Klindworth, D.L., Xu, S.S., Sneller, C., Ohm, J.-B., Hareland, G.A., Edwards, M.C., Chao, S. 2012. Genetic mapping analysis of bread-making quality traits in spring wheat. Crop Science. 52:2182-2197.
Identification of markers linked to the Ug99 stem rust resistance gene Sr28 in wheat (Triticum aestivum L.) -
Rouse, M.N., Nava, I., Chao, S., Jin, Y., Anderson, J. 2012. Identification of markers linked to the Ug99 stem rust resistance gene Sr28 in wheat (Triticum aestivum L.). Theoretical and Applied Genetics. Available: http://www.ncbi.nlm.nih.gov/pubmed/22584633.
Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat Reprint Icon -
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Jin, Y., Faris, J.D., Cai, X., Xu, S.S. 2012. Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat. Genes|Genomes|Genetics. 2:665-673.
Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat -
Xu, S.S., Niu, Z., Klindworth, D.L., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Harris, M.O. 2012. Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat. Meeting Abstract. pg 15.
Fusarium head blight resistance in durum wheat – progress and challenge -
Cai, X., Elias, E., Xu, S.S., Kianian, S., Zhong, S., Chao, S. 2011. Fusarium head blight resistance in durum wheat – progress and challenge. Meeting Abstract. pg.12.
Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line -
Zhong, S., Chu, C.G., Xu, S.S., Ali, S., Puri, K.D., Mergoum, M., Chao, S. 2011. Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line. Meeting Abstract. pg 64.
Development and characterization of wheat lines with Sr37 for stem rust resistance derived from wild Timopheev's wheat -
Zhang, Q., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2012. Development and characterization of wheat lines with Sr37 for stem rust resistance derived from wild Timopheev's wheat. Meeting Abstract. pg 316.
An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers -
Munoz-Amatriain, M., Moscou, M.J., Bhat, P.R., Svensson, J.T., Bartos, J., Suchankova, P., Simkova, H., Endo, T.R., Fenton, R.D., Lonardi, S., Castillo, A.M., Chao, S., Cistue, L., Cuesta-Marcos, A., Forrest, K., Hayden, M.J., Hayes, P.M., Horsley, R.D., Moody, D., Sato, K., Valles, M.P., Wulff, B.B., Muehlbauer, G.J., Dolezel, J., Close, T.J. 2011. An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers. The Plant Genome. 4:238-239.
Quantitative Trait Loci influencing endosperm proteins and end-use quality traits of Hard Red Spring Wheat breeding lines -
Tsilo, T.J., Ohm, J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Quantitative Trait Loci influencing endosperm proteins and end-use quality traits of Hard Red Spring Wheat breeding lines. Czech Journal of Genetics and Plant Breeding. 47:S190-S195.
Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat -
Chu, C., Niu, Z., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Dong, Y., Faris, J.D., Xu, S.S. 2011. Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat. Theoretical and Applied Genetics. 123(7):1107-1119.
Reconstruction of the synthetic W9784 x Opata85 wheat reference population -
Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat -
Abeysekara, N., Faris, J.D., Chao, S., Mcclean, P., Friesen, T.L. 2012. Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat. Phytopathology. 102:94-104.
Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat -
Lowe, I., Jankuloski, L., Chao, S., Chen, X., See, D.R., Dubcovsky, J. 2011. Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theoretical and Applied Genetics. 123:143-157.
Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background -
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Xu, S.S. 2011. Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background. Meeting Abstract. pg. 182.
The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping -
Zitzewitz, J., Condon, F., Corey, A., Cuesta-Marcos, A., Filichkin, T., Haggard, K., Fisk, S.P., Smith, K.P., Muehlbauer, G.J., Karsai, I., Veisz, O., Chao, S., Castro, A.J., Gutierrez, L., Hayes, P.M. 2011. The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping. The Plant Genome. 4:76-91.
Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology -
Oliver, R.E., Lazo, G.R., Lutz, J.D., Rubenfield, M.J., Tinker, N.A., Anderson, J.M., Wisniewski-Morehead, N.H., Adhikary, D., Jellen, E.N., Maughan, P.J., Brown Guedira, G.L., Chao, S., Beattie, A.D., Carson, M.L., Rines, H.W., Obert, D.E., Bonman, J.M., Jackson, E.W. 2011. Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology. Biomed Central (BMC) Genomics. 12:77.
Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes -
Cistué, L., Chao, S., Chutimanitsakun, Y., Corey, A., Cuesta-Marcos, A., Echávarri, B., Filichkina, T., Garcia-Mariño, N., Romagosa, I., Hayes, P.M. 2011. Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes. Theoretical and Applied Genetics. 122:1399-1410.
Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat -
Chao, S., Dubcovsky, J., Dvoral, J., Luo, M., Baenziger, S.P., Matnyazov, R., Clark, D.R., Talbert, L., Anderson, J.A., Dreisigacker, S., Glover, K., Chen, J., Campbell, K., Bruckner, P.L., Rudd, J.C., Haley, S., Carver, B.F., Sims, R., Sorrells, M.E., Akhunov, E.D. 2010. Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat. Biomed Central (BMC) Genomics. 11:727.
Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering genetics -
Niu, Z., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2011. Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering genetics. Genetics. 187(4):1011-1021.
Quantitative Trait Loci Influencing End-use Quality Traits of Hard Red Spring Wheat Breeding Lines -
Tsilo, T.J., Simsek, S., Ohm, J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Quantitative Trait Loci Influencing End-use Quality Traits of Hard Red Spring Wheat Breeding Lines. Genome. 54:460-470.
Transcriptome analysis of a breeding program pedigree examines gene expression diversity and reveals target genes for malting quality improvement Reprint Icon -
Munoz-Amatriain, M., Xiong, Y., Schmitt, M., Bilgic, H., Budde, A.D., Chao, S., Smith, K., Muehlbauer, G. 2010. Transcriptome analysis of a breeding program pedigree examines gene expression diversity and reveals target genes for malting quality improvement. Biomed Central (BMC) Genomics. 11:653.
A novel genome mutation in wheat increases Fusarium Head Blight resistance -
Garvin, D.F., Porter, H., Blankenheim, Z., Chao, S., Dill-Macky, R. 2010. A novel genome mutation in wheat increases Fusarium Head Blight resistance [abstract]. In: Proceedings of the 2010 National Fusarium Head Blight Forum, December 7-9, 2010, Milwaukee, Wisconsin. p. 142.
Fighting against FHB – an excellent novel resistance source for future wheat breeding -
Chu, C., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Faris, J.D., Xu, S.S. 2010. Fighting against FHB – an excellent novel resistance source for future wheat breeding. Meeting Abstract. pg. 14.
Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat -
Xu, S.S., Chu, C., Friesen, T.L., Chao, S., Zhong, S., Halley, S., Cai, X., Elias, E.M. 2010. Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat. Meeting Abstract. pg. 172.
Analysis of genetic diversity using SNP markers in oat -
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jannink, J., Redman, R.R., Jackson, E.W. 2011. Analysis of genetic diversity using SNP markers in oat. Meeting Abstract. pg. 209.
Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides -
Niu, Z., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2011. Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides. Meeting Abstract. 195.
Genomic selection in plant breeding: knowledge and prospects -
Lorenz, A.J., Chao, S., Asoro, F.G., Heffner, E.L., Hayashi, T., Iwata, H., Smith, K.P., Sorrells, M.E., Jannink, J. 2011. Genomic selection in plant breeding: knowledge and prospects. Advances in Agronomy. 110:77-123.
Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.) -
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Elias, E., Dubcovsky, J. 2011. Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.). Theoretical and Applied Genetics. 122:649-658.
Large-Scale SNP Marker Development and Genotyping in Oat -
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jackson, E.W. 2010. Large-Scale SNP Marker Development and Genotyping in Oat. Proceedings of The 5th European Oat Conference, September 1-3, 2010, Ystad, Sweden. P.43.
Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites Reprint Icon -
Bodo Slotta, T.A., Foley, M.E., Chao, S., Hufbauer, R., Horvath, D.P. 2010. Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites. Weed Science. 58:387-394.
Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm -
Massman, J., Cooper, B., Horsley, R., Neate, S., Dill-Macky, R., Chao, S., Dong, Y., Muehlbauer, G., Smith, K. 2011. Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm. Molecular Breeding. 27:439-454.
Genome Mapping of Kernel Characteristics in Hard Red Spring Wheat Breeding Lines -
Tsilo, T., Hareland, G.A., Simsek, S., Chao, S., Anderson, J. 2010. Genome Mapping of Kernel Characteristics in Hard Red Spring Wheat Breeding Lines. Theoretical and Applied Genetics 121:717–730
Genetic Mapping and QTL Analysis of Flour Color and Milling Yield Related Traits Using Recombinant Inbred Lines in Hard Red Spring Wheat Reprint Icon -
Tsilo, T.J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Genetic Mapping and QTL Analysis of Flour Color and Milling Yield Related Traits Using Recombinant Inbred Lines in Hard Red Spring Wheat. Crop Science. 51:237-246.
Association Mapping of Spot Blotch Resistance in Wild Barley Reprint Icon -
Roy, J.K., Smith, K.P., Muehlbauer, G.J., Chao, S., Close, T.J., Steffenson, B.J. 2010. Association Mapping of Spot Blotch Resistance in Wild Barley . Molecular Breeding. 26:243-256.
Mike Gale and cereal genetics research in China -
Jia, J., Liu, C., Wang, D., Chao, S., Wang, M.L., Qi, X. 2010. Mike Gale and cereal genetics research in China. Molecular Breeding. 25:365-367
Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines -
Xu, S.S., Chu, C.G., Chao, S., Klindworth, D.L., Faris, J.D., Elias, E.M. 2010. Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines. Theoretical and Applied Genetics.120:1575-1585
Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.) -
Chao, S., Xu, S.S., Elias, E., Faris, J.D., Sorrells, M. 2010. Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.). Crop Science. 50:1180-1187
The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement -
Soria, M.A., Sherman, J., Anderson, J.A., Baenziger, P., Bai, G., Berzonsky, B., Brown Guedira, G.L., Campbell, K.J., Carver, B.F., Chao, S., Fritz, A., Griffey, C., Haley, S.D., Johnson, J.W., Kianian, S.F., Kidwell, K., Matthews, D.E., Mergoum, M., Ohm, H., Peterson, J., Lizrazu, O., Rudd, J., Talbert, L., Sorrells, M.E., Souza, E.J., Yan, L., Zemetra, R. 2010. The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement. Meeting Abstract.
Development and Implementation of High-Throughput SNP Genotyping in Barley Reprint Icon -
Close, T.J., Bhat, P., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J., Wanamaker, S., Bozdag, S., Roose, M., Moscou, M., Chao, S., Varshney, R., Szucs, P., Sato, K., Hayes, P., Matthews, D.E., Kleinhofs, A., Muehlbauer, G., Deyoung, J., Marshall, D.F., Madishetty, K., Fenton, R.D., Condamine, P., Graner, A., Waugh, R. 2009. Development and Implementation of High-Throughput SNP Genotyping in Barley. Biomed Central (BMC) Genomics. 10:582.
Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat -
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Dubcovsky, J. 2010. Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat. Proceedings of Plant and Animal Genome Conference. p. 302, San Diego, CA Jan 9-13, 2010.
Identification of Novel Tan Spot Resistance QTLs Using an SSR-Based Linkage Map of Tetraploid Wheat Reprint Icon -
Chu, C., Chao, S., Friesen, T.L., Faris, J.D., Zhong, S., Xu, S.S. 2009.Novel Tan Spot Resistance QTLs Detected Using an SSR-Based Linkage Map of Tetraploid Wheat. Molecular Breeding. 25:327-338.
Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394 -
Tsilo, T.J., Hareland, G.A., Chao, S., Simsek, S., Anderson, J.A. 2009. Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394. Meeting Abstract 167-7
Population structure and linkage disequilibrium in US barley germplasm: implications for association mapping -
Hamblin, M.T., Close, T.J., Bhat, P.R., Chao, S., Abraham, K., Blake, T., Brooks, W.S., Cooper, B., Griffey, C.A., Hayes, P.M., Hole, D.J., Horsley, R.D., Obert, D.E., Smith, K.P., Ullrich, S.E., Muehlbauer, G.J., Jannink, J. 2010. Population structure and linkage disequilibrium in US barley germplasm: implications for association mapping. Crop Science. 50:556-566.
An integrated resource for barley linkage map and malting quality QTL alignment Reprint Icon -
Szucs, P., Blake, V.C., Chao, S., Marcos-Cuesta, A., Muehlbauer, G.J., Ramsay, L., Waugh, R., Hayes, P.M. 2009. An integrated resource for barley linkage map and malting quality QTL alignment. The Plant Genome. 2(2):134-140, 2009
Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines -
Klindworth, D.L., Hareland, G.A., Elias, E.M., Faris, J.D., Chao, S., Xu, S.S. 2009. Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science 50: 29-35
Marker imputation in barley association studies -
Jannink, J., Iwata, H., Bhat, P.R., Chao, S., Wenzl, P., Muehlbauer, G.J. 2009. Marker imputation in barley association studies. The Plant Genome. 2:11-22.
Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm -
Chu, C., Chao, S., Cai, X., Zhong, S., Xu, S.S. 2008. Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.156
Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat -
Zhang, Q., Oliver, R.E., Mcarthur, R.I., Chao, S., Stack, R.W., Zhong, S., Xu, S.S., Cai, X. 2008. Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat. Meeting Abstract. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.219
The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat -
Chu, C., Friesen, T.L., Chao, S., Faris, J.D., Xu, S.S. 2008. The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat. National Wheat Genomics Conference. p. 9 (NWGC), December 4-6, 2008, Indianapolis, IN
Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat Reprint Icon -
Tsilo, T., Chao, S., Jin, Y., Anderson, J. 2009. Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat. Theoretical and Applied Genetics. 118:515-524
New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat Reprint Icon -
Liu, S., Chao, S., Anderson, J.A. 2008. New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat. Theoretical and Applied Genetics. 118:177-183
QTL Analysis of Pasta Quality using a Composite Microsatellite - SNP Map of Durum Wheat Reprint Icon -
Zhang, W., Chao, S., Manthey, F., Chicaiza, O., Brevis, J.C., Echenique, J., Dubcovsky, J. 2008. Qtl analysis of pasta quality using a composite microsatellite - snp map of durum wheat. Theoretical and Applied Genetics. 117:1361-1377
A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Reprint Icon -
Abu, Q.M., Liu, Z., Faris, J.D., Chao, S., Edwards, M.C., Lai, Z., Franckowiak, J.D., Friesen, T.L. 2008. A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Theoretical and Applied Genetics. 117:1261-1270
Chromosome Location and Characterization of Genes for Grain Protein Content in Triticum dicoccoides -
Xu, S.S., D.L. Klindworth, G.A. Hareland, E.M. Elias, J.D. Faris, and S. Chao. 2008. Chromosome location and characterization of genes for grain protein content in Triticum dicoccoides. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia. Pp 572-574.
Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.) -
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M., Dubcovsky, J. 2008. Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.). Molecular Breeding. 23:23-33
Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes Reprint Icon -
Reedy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2008. Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes. The Plant Genome. 1:55-66
Origin of barley accessions with multiple disease resistance determined by SSR analysis. -
Bonman, J.M., Gu, Y., Coleman Derr, D., Jackson, E.W., Chao, S., Bockelman, H.E. 2008. Origin of barley accessions with multiple disease resistance determined by SSR analysis.. International Congress of Plant Pathology Abstracts and Proceedings.
Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.) -
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M., Dvorak, J., Dubcovsky, J. Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.). Plant and Animal Genome Conference. p. 157
Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat -
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Scofield, S.R., Faris, J.D. 2007. Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat. Meeting Abstract. National Wheat Genomics Conference Abstracts. pg 28
Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem -
Faris, J.D., Friesen, T.L., Lu, H., Reddy, L., Zhang, Z., Liu, Z., Xu, S.S., Meinhardt, S.W., Fellers, J.P., Oliver, R.P., Solomon, P.S., Chao, S., Chu, C., Abeysekara, N., Scofield, S.R. 2007. Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem. Meeting Abstract. National Wheat Genomics Conference abstracts pg. 11
High throughput tissue preparation for large-scale genotyping experiments Reprint Icon -
Boda Slotta, T.A., Brady, L., Chao, S. 2008. High throughput tissue preparation for large-scale genotyping experiments. Molecular Ecology Resources. 8:83-87
ITEMS FROM NORTH DAKOTA: USDA-ARS CEREAL CROPS RESEARCH UNIT -
Faris, J.D., Xu, S.S., Friesen, T.L., Klindworth, D.L., Simons, K.J., Chao, S. 2007. Items from north dakota: usda-ars cereal crops research unit. 2007 Annual Wheat Newsletter. pg. 141-148
Molecular Breeding Using a Major QTL for Fusarium Head Blight Resistance in Wheat -
Anderson, J.A., Chao, S., Liu, S. 2008. Molecular Breeding Using a Major QTL for Fusarium Head Blight Resistance in Wheat. Crop Science. 47(3):S112-S119
EVALUATION OF GENETIC DIVERSITY AND GENOME-WIDE LINKAGE DISEQUILIBRIUM AMOUNG US WHEAT (TRITICUM AETIVUM L.) GERMPLASM REPRESENTING DIFFERENT MARKET CLASSES -
Chao, S., Zhang, W., Dubcovsky, J., Sorrells, M. 2007. Evaluation of genetic diversity and genome-wide linkage disequilibrium amoung U.S. wheat (Triticum aetivum L.) germplasm representing different market classes. Crop Science. 47:1018-1030.
Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes -
Chao, S., Zhang, W., Dubcovsky, J., Sorrells, M. 2007. Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes. Plant and Animal Genome VX Conference Abstracts. p. 168.
Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat -
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2007. Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat. Plant and Animal Genome VX Conference Abstracts. p. 176.
APPLICATION OF MOLECULAR MARKER TECHNOLOGIES ON CEREAL CROPS IMPROVEMENT -
Chao, S. 2006. Application of molecular marker technologies on cereal crops improvement. American Oat Workers Conference, July 23-25, Fargo, ND.
USE OF A LARGE-SCALE TRITICEAE EST RESOURCE TO REVEAL GENE EXPRESSION PROFILES IN HEXAPLOID WHEAT (TRITICUM AESTIVUM L.) -
Chao, S., Lazo, G.R., You, F., Crossman, C.C., Hummel, D.D., Lui, N., Laudencia-Chingcuanco, D., Anderson, J.A., Close, T.J., Dubcovsky, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N.L.V., Nguyen, H.T., Sorrells, M.E., McGuire, P.E., Qualset, C.O., Anderson, O.D. 2006. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544 (2006).
USE OF HIGH THROUGHPUT MARKER TECHNOLOGIES FOR MARKER-ASSISTED BREEDING IN WHEAT AND BARLEY. -
Chao, S., Anderson, J.A., Glover, K., Smith, K. 2006. Use of high throughput marker technologies for marker-assisted breeding in wheat and barley [abstract]. Plant and Animal Genome XIV Conference. Abstract No. W43:17.
QTLS FOR SEMOLINA AND PASTA COLOR IN DURUM WHEAT -
Zhang, W., Echenique, V., Manthey, F., Helguera, M., Chao, S., Dubcovsky, J. 2006. QTLs for semolina and pasta color in durum wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P321:181.
A COST-EFFECTIVE HIGH THROUGHPUT GENOTYPING METHODS -
Brady, L.M., Anderson, J., Smith, K., Chao, S. 2005. A cost-effective high throughput genotyping methods, page 18. National Fusarium Head Blight Forum Proceedings, Dec 11-13, 2005, Milwaukee, WI.
GROUP 3 CHROMOSOME BIN MAPS OF WHEAT AND THEIR RELATIONSHIP TO RICE CHROMOSOME 1 -
Munkvold, J.D., Greene, R.A., Bermudez-Kandianis, C.E., La Rota, C.M., Edwards, H., Sorrells, S.F., Dake, T., Benscher, D., Kantety, R., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Pathan, M.S., Nguyen, H.T., Matthews, D.E., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Anderson, J.A., Gonzalez-Hernandez, J.L., Peng, J., Lapitan, N.V., Qi, L.L., Echalier, B., Gill, B.S., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sandhu, D., Eryman, M., Gill, K.S., Mcguire, P.E., Qualset, C.O., Sorrells, M.E. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics. 168:639-650.
ANALYSIS OF EST LOCI ON WHEAT CHROMOSOME GROUP 4 -
Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Surlan-Momirovic, G., Kim, S., Chema, K., Fang, P., Haule, L., Struxness, H., Birkes, J., Yaghoubian, C., Kinner, R.S., Nguyen, V., Qi, L.L., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Gill, B.S., Gonzalez, J., Wennerlind, E., Anderson, J.A., Choi, D.W., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Nguyen, H.T., Gustafson, J.P. 2004. Analysis of est loci on wheat chromosome group 4. Genetics. 168:651-663.
A 2500-LOCUS BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 5 PROVIDES INSIGHTS ON GENE DISTRIBUTION AND COLINEARITY WITH RICE -
Linkiewicz, A.M., Qi, L.L., Gill, B.S., Echalier, B., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Akhunov, E.D., Dvorak, J., Pathan, M.S., Nguyen, H.T., Peng, J., Lapitan, N.V., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2004. A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics. 168:665-676.
DELETION MAPPING OF HOMOEOLOGOUS GROUP 6-SPECIFIC WHEAT ESTS -
Randhawa, H.S., Dilbirligi, M., Sidhu, D., Erayman, M., Sandhu, D., Bondareva, S., Chao, S., Lazo, G.R., Anderson, O.D., Miftahudin, Gustafson, J.P., Echalier, B., Qi, L.L., Gill, B.S., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Sorrells, M.E., Wennerlind, E., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Endo, T.R., Close, T.J., Mcguire, P., Qualset, C.O., Gill, K.S. 2004. Deletion mapping of homoeologous group 6-specific wheat ests. Genetics. 168:677-686.
A CHROMOSOME BIN MAP OF 2148 EST LOCI OF WHEAT HOMOEOLOGOUS GROUP 7 -
Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Rust, J.L., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L.L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Sidhu, D., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez-Hernandez, J.L., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A chromosome bin map of 2148 est loci of wheat homoeologous group 7. Genetics. 168:687-699.
DEVELOPMENT OF AN EXPRESSED SEQUENCE TAG (EST) RESOURCE FOR WHEAT (TRITICUM AESTIVUM L.): EST GENERATION, UNIGENE ANALYSIS, PROBE SELECTION, AND BIOINFORMATICS FOR A 16,000-LOCUS BIN-DELINEATED MAP -
Lazo, G.R., Chao, S., Hummel, D.H., Edwards, H., Crossman, C.C., Lui, N., Matthews, D.E., Carollo, V.L., Hane, D., You, F.M., Butler, E., Miller, R., Close, T.J., Peng, J., Lapitan, N.V., Gustafson, J.P., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K.G., Kianian, S.F., Mahmoud, A., Miftahudin, Ma, X., Wennerlind, E.J., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Anderson, O.D. 2004. Development of an expressed sequence tag (est) resource for wheat (triticum aestivum l.): est generation, unigene analysis, probe selection, and bioinformatics for a 16,000-locus bin-delineated map. Genetics. 168:585-593.
A CHROMOSOME BIN MAP OF 16,000 EST LOCI AND DISTRIBUTION OF GENES AMONG THE THREE GENOMES OF POLYPLOID WHEAT -
Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Ratnasiri, A., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Kantety, R., La Rota, M., Munkvold, J.D., Sorrells, S.F., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Randhawa, H.S., Sandhu, D., Bondareva, S., Gill, K.S., Mahmoud, A., Ma, X., Miftahudin, Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, J.L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Zhang, D., Nguyen, H.T., Choi, D.W., Close, T.J., Mcguire, P.E., Qualset, C.O., Gill, B.S. 2004. A chromosome bin map of 16,000 est loci and distribution of genes among the three genomes of polyploid wheat. Genetics. 168:701-712.
CONSTRUCTION AND EVALUATION OF CDNA LIBRARIES FOR LARGE SCALE EST SEQUENCING IN WHEAT (TRITICUM AESTIVUM L.) -
Zhang, D., Choi, D.W., Wanamaker, S., Fenton, R.D., Chin, A., Malatrasi, M., Turuspekov, Y., Walia, H., Akhunov, E., Kianian, P., Otto, C., Simons, K., Deal, K., Echenique, V., Stamova, B., Ross, K., Butler, E., Doherty, L., Verhey, S.D., Johnson, R., Altenbach, S.B., Kothari, K.M., Tanaka, C.K., Shah, M.M., Chingcuanco, D.L., Gitt, M.A., Pham, J., Han, P., Miller, R.E., Crossman, C.C., Chao, S., Lazo, G.R., Klueva, N., Gustafson, J.P., Kianian, S.F., Dubcovsky, J., Walker-Simmons, M.K., Gill, K.S., Dvorak, J., Anderson, O.D., Mcguire, P., Qualset, C.O., Nguyen, H.T., Close, T.J. 2004. Construction and evaluation of cdna libraries for large scale est sequencing in wheat (triticum aestivum l.). Genetics. 168:595-608.
CHROMOSOME BIN MAP OF EXPRESSED SEQUENCE TAGS IN HOMOEOLOGOUS GROUP 1 OF HEXAPLOID WHEAT AND HOMOEOLOGY WITH RICE AND ARABIDOPSIS -
Peng, J., Zadeh, H., Lazo, G.R., Gustafson, J.P., Chao, S., Anderson, O.D., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Mahmoud, A., Miftahudin, Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2004. Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and arabidopsis. Genetics. 168:609-623.
A 2600-LOCUS CHROMOSOME BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 2 REVEALS INTERSTITIAL GENE-RICH ISLANDS AND COLINEARITY WITH RICE -
Wennerlind, E., Nduati, V., Gonzalez-Hernandez, J.L., Mesfin, A., Trudeau-Spanjers, M., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Qi, L.L., Gill, B.S., Echalier, B., Linkiewicz, A.M., Akhunov, E.D., Dubcovsky, J., Peng, J., Lapitan, N.V., Zhang, D., Nguyen, H.T., Miftahudin, Gustafson, J.P., Greene, R.A., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sidhu, D., Dilbirligi, M., Gill, K.S., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Anderson, J.A. 2004. A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics. 168:625-637.
SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCUS DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS -
Akhunov, E.D., Akhunov, A.R., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates along chromosome arms. Proceedings of the National Academy of Sciences. 100:10836-10841.
NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES -
Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. New insights into the organization and evolution of wheat genomes. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 248-253.
A TWO-THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5 -
Linkiewicz, A.M., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Peng, J., Lapitan, N., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2003. A two-thousand loci physical map of wheat homoeologous group 5. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 986-988.
GC COMPOSITION AND CODON USAGE IN GENES OF INBREEDING AND OUTCROSSING TRITICEAE SPECIES -
Akhunov, E.D., David, J.L., Chao, S., Lazo, G.R., Anderson, O.D., Qi, L., Echalier, B., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Gc composition and codon usage in genes of inbreeding and outcrossing triticeae species. In: Proceedings of International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. p. 203-206.
A PHYSICAL MAP OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP I CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM -
Peng, J.H., Zadeh, H., Lazo, G.R., Qi, L., Echalier, B., Gill, B.S., Chao, S., Anderson, O.D., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Miftahudin, Gustafson, J.P., Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2003. A physical map of expressed sequence tags and functional genomics in the group i chromosomes of wheat, triticum aestivum. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p.1035-1037.
A TRANSCRIPTOME MAP OF WHEAT -
Gill, B.S., Qi, L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermidez-Kandianis, C.E., Greene, R.A., La Rota, M., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Gill, K.S., Miftahudin, Ma, X., Mahmoud, A., Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. A transcriptome map of wheat. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 261-264.
THE USE OF ESTS TO ANALYZE THE SPECTRUM OF WHEAT SEED PROTEINS -
Anderson, O., Carollo, V., Chao, S., Laudencia-Chingcuanco, D., Lazo, G. 2004. The Use of ESTs to Analyze the Spectrum of Wheat Seed Proteins. Proceedings-8th Gluten Workshop. p. 18-21.
DELETION MAPPING OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP 1 CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM -
Peng, J., Zadeh, H., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., Dake, T., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Lapitan, N. 2003. Deletion mapping of expressed sequence tags and functional genomics in the group 1 chromosomes of wheat, triticum aestivum [abstract]. XI Plant and Animal Genome Conference. p. 164.
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