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United States Department of Agriculture

Agricultural Research Service

Related Topics

Barbara Baker
Plant Gene Expression Center
Genetics

Phone: (510) 559-5912
Fax: (510) 559-5678
Room 3203B

USDA, ARS, PWA, PGEC
800 BUCHANAN STREET
ALBANY , CA 94710

Projects
Manipulation of Plant Disease Resistance Genes for Improved Crop Protection
Appropriated (D)
  Accession Number: 422892

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Frequent gain and loss of resistance against tobacco mosaic virus (TMV) in Nicotiana Species Reprint Icon -
Yuan, X., Yan, C., Wu, Z., Ren, F., Zhan, H., Baker, B.J., Chen, J., Kuang, H. 2015. Frequent gain and loss of resistance against tobacco mosaic virus (TMV) in Nicotiana Species. Molecular Plant. 8(12):1813-1815. doi: 10.1016/j.molp.2015.09.001.
Identification of I-7 expands the repertoire of genes for resistance to Fusarium wilt in tomato to three resistance gene classes Reprint Icon -
Gonzales-Cendales, Y., Catanzariti, A., Baker, B.J., Mcgrath, D.J., Jones, D.A. 2015. Identification of I-7 expands the repertoire of genes for resistance to Fusarium wilt in tomato to three resistance gene classes. Molecular Plant Pathology. doi: 10.1111/mpp.12294/epdf.
Loss of GSNOR1 function leads to compromised auxin signaling and polar auxin transport Reprint Icon -
Wang, D., Shi, Y., Wang, C., Cohen, J., Hendrickson Culler, A., Baker, B.J., Liu, J. 2015. Loss of GSNOR1 function leads to compromised auxin signaling and polar auxin transport. Molecular Plant. 8(9):1350-1365.
S-nitrosylation mediates nitric oxide -auxin crosstalk in auxin signaling and polar auxin transport -
Nb is a TIR-NLR innate immune receptor that requires EDS1 for induction of the hypersensitive response to the potato virus X movement protein -
Preparation of cDNA Library for dRNA-seq Reprint Icon -
Li, F., Baker, B.J. 2012. Preparation of cDNA Library for dRNA-seq. Bio-protocol. Vol 70, Pages 891-901.
SoMART, a web server for miRNA, tasiRNA and target gene analysis in Solanaceae plants -
Li, F., Orban, R., Baker, B.J. 2012. SoMART, a web server for miRNA, tasiRNA and target gene analysis in Solanaceae plants. Genome Research. 70:891-901.
miRNA regulation of plant innate receptors -
Li, F., Pignatta, D., Bendix, C., Brunkard, J., Cohn, M., Tung, J., Sun, H., Kumar, P., Baker, B.J. 2012. miRNA regulation of plant innate receptors. Proceedings of the National Academy of Sciences. 5:1790-1795.
Inferred origin of several Native American potatoes from the Pacific Northwest using SSR markers -
Zhang, L., Brown, C.R., Culley, D., Baker, B.J., Kunibe, E., Denny, H., Smith, C., Ward, N., Beavert, T., Coburn, J., Pavek, J.J., Dauenhauer, N., Dauenhauer, R. 2010. Inferred origin of several Native American potatoes from the Pacific Northwest using SSR markers. Euphytica. 174:15-29.
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs Reprint Icon -
Kuang, H., Padmanabhan, C., Li, F., Kamei, A., Bhaskar, P.B., Ouyang, S., Jiang, J., Buell, C., Baker, B.J. 2008. Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs. Genome Research. 19:42-56.
The Use of STS Markers in the Marker-assisted Selection of Columbia Root-knot Nematode Resistance Introgressed from Solanum bulbocastanum -
Zhang, L., Mojtahedi, H., Kuang, H., Baker, B.J., Brown, C.R. 2007. The Use of STS Markers in the Marker-assisted Selection of Columbia Root-knot Nematode Resistance Introgressed from Solanum bulbocastanum. Crop Science. 47:2021-2026.
THE R1 RESISTANCE CLUSTER CONTAINS THREE GROUPS OF INDEPENDENTLY EVOLVING, TYPE I R1 HOMOLOGUES AND SHOWS SUBSTANTIAL STRUCTURAL VARIATION AMONG HAPLOTYPES OF SOLANUM DEMISSUM -
Kuang, H., Wei, F., Marano, M., Wirtz, U., Wang, X., Liu, J., Shum, W., Zaborsky, J., Tallon, L.J., Rensink, W., Lobst, S., Zhang, P., Tornqvist, C., Tek, A., Bamberg, J., Helgeson, J.P., Fry, W., You, F., Luo, M., Jiang, J., Buell, C., Baker, B.J. 2005. The R1 resistance cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. Plant Journal. 44(1):37-51.
EDS1 IN TOMATO IS REQUIRED FOR RESISTANCE MEDIATED BY TIR-CLASS R GENES AND THE RECEPTOR-LIKE R GENE VE -
Hu, G., Dehart, A.K., Li, Y., Ustach, C., Handley, V., Navarre, R., Hwang, C.F., Aegerter, B.J., Williamson, V., Baker, B.J. 2005. EDS1 in tomato is required for resistance mediated by TIR-class R genes and the receptor-like R gene Ve. Plant Journal. 42(3):376-91.
COMPARATIVE GENOMICS ENABLED THE ISOLATION OF THE R3A LATE BLIGHT RESISTANCE GENE IN POTATO -
Huang, S., Van Der Vossen, E.A., Kuang, H., Vleeshouwers, V.G., Zhang, N., Borm, T.J., Van Eck, H.J., Baker, B.J., Jacobsen, E., Visser, R.G. 2005. Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. Plant Journal. 42(2):251-61.
VPEY EXHIBITS A CASPASE-LIKE ACTIVITY THAT CONTRIBUTES TO DEFENSE AGAINST PATHOGENS -
Rojo, E., Martin, R., Carter, C., Zouhar, J., Pan, S., Plotnikova, J., Jin, H., Paneque, M., Sanchez-Serrano, J., Baker, B.J., Ausubel, F.M., Raikhel, N.V. 2004. VPEy Exhibits a Caspase-like Activity that Contributes to Defense against Pathogens. Current Biology, 14:1897-1906.
VIRUS-INDUCED GENE SILENCING IN SOLANUM SPECIES -
Gianinna, B., Martin-Hermandez, A.M., Jin, H., Chen, J., Baulcombe, D.C., Baker, B.J., Jones, J.G. 2004. Virus-induced gene silencing in Solanum species. Plant Journal 39(2)264-271.
VIRUS-INDUCED GENE SILENCING IN SOLANUM SPECIES -
Brigneti, G., Martin-Hernandezx, A.M., Jin, H., Chen, J., Baulcombe, D.C., Baker, B.J., Jones, J.G. 2004. Virus-induced gene silencing in solanum species. Plant Journal, 39(2): 264.
THE TOMATO RESISTANCE PROTEIN BS4 IS A PREDICTED NON-NUCLEAR TIR-NB-LRR PROTEIN THAT MEDIATES DEFENSE RESPONSES TO SEVERELY TRUNCATED DERIVATIVES OF AVRBS4 AND OVEREXPRESSED AVRBS3 -
Schornack, S., Ballvora, A., Gurlebeck, D., Peart, J., Ganal, M., Baker, B.J., Bonas, U., Lahaye, T. 2003. The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3. Plant Journal 37(1) 46-60.
BIOTIC INTERACTIONS - SIGNALS FROM THE ENVIRONMENT: THE GOOD, THE BAD AND THE UGLY! -
BAKER, B.J., PARKER, J. BIOTIC INTERACTIONS - SIGNALS FROM THE ENVIRONMENT: THE GOOD, THE BAD AND THE UGLY! CURRENT OPINION IN PLANT BIOLOGY. 2003. 6(4):297-299.
FUNCTION OF A MITOGREN-ACTIVATED PROTEIN KINASE PATHWAY IN N GENE-MEDIATED RESISTANCE IN TOBACCO -
JIN, H., LIU, Y., YANG, K., KIM, C., BAKER, B.J., ZHANG, S. FUNCTION OF A MITOGREN-ACTIVATED PROTEIN KINASE PATHWAY IN N GENE-MEDIATED RESISTANCE IN TOBACCO. PLANT JOURNAL. 2003. 33(4):719-731.
COMPARATIVE ANALYSES OF POTATO EXPRESSED SEQUENCE TAG LIBRARIES -
RONNING, C.M., STEGALKINA, S.S., ASCENZI, R.A., BOUGRI, O., HART, A.L., UTTERBACH, T.R., VANAKEN, S.E., RIEDMULLER, S.B., WHITE, J.A., CHO, J., PERTEA, G.M., LEE, Y., KARAMYCHEVA, S., SULTANA, R., TSAI, J., QUACKENBUSH, J., GRIFFITHS, H.M., RESTREPO, S., SMART, C.D., FRY, W.E., VAN DER HOEVEN, R., TANKSLEY, S., ZHANG, P., JIN, H., YAMAMOTO, M.L., BAKER, B.J., BUELL, C. COMPARATIVE ANALYSES OF POTATO EXPRESSED SEQUENCE TAG LIBRARIES. PLANT PHYSIOLOGY. 2003. 131:419-429.
INTERACTION BETWEEN TWO MITOGEN-ACTIVATED PROTEIN KINASES DURING TOBACCO DEFENSE SIGNALING -
BAKER, B.J. INTERACTION BETWEEN TWO MITOGEN-ACTIVATED PROTEIN KINASES DURING TOABCCOM DEFENSE SIGNALING. PLANT JOURNAL. 2003. 34:149-160.
STRUCTURE-FUNCTION ANALYSIS OF THE TOBACCO MOSAIC VIRUS RESISTANCE GENE N -
Dinehsh-Kumar, S., Baker, B.J. 2000. Structure-function analysis of the tobacco mosaic virus resistance gene N. Proceedings of the National Academy of Sciences 97(26):14789-14794.
ALTERNATIVELY SPLICED N RESISTANCE GENE TRANSCRIPTS: THEIR POSSIBLE ROLE INTOBACCO MOSAIC VIRUS RESISTANCE -
Baker, B.J., Dinesh-Kumar, S.P. 2000. Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance. Proceedings of the National Academy of Sciences 97(4):1908-1913.
THE HELICASE DOMAIN OF THE TMV REPLICASE PROTEINS INDUCES THE N-MEDIATED DEFENCE RESPONSE IN TOBACCO -
Erickson, F., Holzberg, S., Calderon-Urrea, A., Handley, V., Axtell, M., Corr, C., Baker, B.J. 1999. The helicase domain of the TMV replicase proteins induces the N-mediated defence response in tobacco. Plant Journal 18(1) 67-75.
INTERACTIONS BETWEEN TOBACCO MOSAIC VIRUS AND THE TOBACCO N GENE -
Baker, B.J., Erickson, F.L., Dinesh-Kumar, S.P., Holzberg, S., Ustach, C., Dutton, M., Handley, V., Corr, C. 1999. Interactions between tobacco mosaic virus and the tobacco N gene. Proceedings of the Royal Society of London B., 354(1383):653-658.
SIGNALING IN PLANT-MICROBE INTERACTIONS -
Baker, B.J., Zambryski, P., Staskawicz, B., Dinesh-Kumar, S.P. 1997. Signaling in plant-microbe interactions. Science 276(5313):726-733.
DS EXCISION FROM EXTRACHROMOSOMAL GEMINIVIRUS VECTOR DNA IS COUPLED TO VECTOR DNA REPLICATION IN MAIZE -
Wirtz, U., Obsorne, B., Baker, B.J. 1997. Ds excision from extrachromosomal geminivirus vector DNA is coupled to vector DNA replicaiton in maize. Plant Journal 11(1):125.
MOVERS AND SHAKERS: MAIZE TRANSPOSONS AS TOOLS FOR ANALYZING OTHER PLANT GENOMES -
Osborne, B.I., Baker, B.J. 1995. Movers and shakers: maize transposons as tools for analyzing other plant genomes. Current Opinion in Cell Biology, 7(3), 407-413.
Last Modified: 5/2/2016
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