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United States Department of Agriculture

Agricultural Research Service

Related Topics

David M Grant
Corn Insects and Crop Genetics Research
Genetics

Phone: (515) 294-1205
Fax: (515) 294-9359
Room G304

G304 AGRONOMY HALL
IOWA STATE UNIVERSITY
AMES , IA 500111010

Projects
SoyBase and the Legume Clade Database
In-House Appropriated (D)
  Accession Number: 425040
ACCELERATED COMMERCIAL DEVELOPMENT OF HYDROTREATED RENEWABLE JET FUEL (HRJ) FROM REDESIGNED OILSEED FEEDSTOCKS SUPPLY CHAINS
Reimbursable Cooperative Agreement (R)
  Accession Number: 424027

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Population genomic analysis reveals differential evolutionary histories and patterns of diversity across subgenomes and subpopulations of Brassica napus L. Reprint Icon -
Gazave, E., Tassone, E.E., Ilut, D.C., Wingerson, M., Datema, M., Witsenboer, H., Davis, J.B., Grant, D.M., Dyer, J.M., Jenks, M.A., Brown, J., Gore, M.A. 2016. Population genomic analysis reveals differential evolutionary histories and patterns of diversity across subgenomes and subpopulations of Brassica napus L. Frontiers in Plant Science. 7:525. doi: 10.3389/fpls.2016.00525.
Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean -
Bolon, Y., Stec, A.O., Michno, J., Roessler, J., Bhaskar, P.B., Ries, L., Dobbels, A.A., Campbell, B.W., Young, N.P., Anderson, J.E., Grant, D.M., Orf, J.H., Naeve, S.L., Muehlbauer, G.J., Vance, C.P., Stupar, R.M. 2014. Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean. Genetics. DOI:10.1534/genetics.114.170340.
Integration of the draft sequence and physical map as a framework for genomic research in soybean (Glycine max (L.) Merr.) and wild soybean (Glycine soja Sieb. and Zucc.) -
Ha, J., Abernathy, B., Nelson, W., Grant, D.M., Wu, X., Nguyen, H., Stacey, G., Wing, R., Shoemaker, R.C., Jackson, S. 2012. Integration of the draft sequence and physical map as a framework for genomic research in soybean (Glycine max (L.) Merr.) and wild soybean (Glycine soja Sieb. and Zucc.). Genes, Genomes, Genetics. 2(3):321-329.
SoyBase and the legume information system: accessing information about the soybean and other legume genomes -
Cannon, S.B., Crow, J.A., Grant, D.M. 2012. SoyBase and the legume information system: accessing information about the soybean and other legume genomes. In: Wilson, R. editor. Designing Soybeans for 21st Century Markets. Urbana, IL: AOCS Press. p. 53-66.
Mobilizing the genome of Lepidoptera through novel sequence gains and end creation by non-autonomous Lep1 Helitrons -
Coates, B.S., Hellmich II, R.L., Grant, D.M., Abel, C.A. 2012. Mobilizing the genome of Lepidoptera through novel sequence gains and end creation by non-autonomous Lep1 Helitrons. DNA Research. 19(1):11-21.
Changes in twelve conserved soybean genomic regions following three rounds of polyploidy -
Severin, A.J., Cannon, S.B., Graham, M.A., Grant, D.M., Shoemaker, R.C. 2011. Changes in twelve conserved soybean genomic regions following three rounds of polyploidy. The Plant Cell. 23(9):3129-3136.
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean Reprint Icon -
Bolon, Y.E., Haun, W.J., Xu, W.W., Grant, D.M., Stacey, M.G., Nelson, R., Gerhardt, D.J., Jeddeloh, J.A., Stacey, G., Muehlbauer, G.J., Orf, J.H., Naeve, S.L., Stupar, R.M., Vance, C.P. 2011. Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiology. 156(1):240-253.
Fast neutron mutants database and web displays at SoyBase -
Grant, D.M., Bolon, Y.E., Nelson, R., Vance, C.P., Shoemaker, R.C. 2011. Fast neutron mutants database and web displays at SoyBase [abstract]. Plant and Animal Genome Conference. Poster 389.
Soybean transcriptome analysis using the SoyBase soybean metabolic database SoyCyc -
Nelson, R., Grant, D.M., Cannon, S.B., Chi, A., Zhang, P., Rhee, S., Shoemaker, R.C. 2011. Soybean transcriptome analysis using the SoyBase soybean metabolic database SoyCyc [abstract]. Plant and Animal Genome Conference. Poster 772.
Phenotypic and genomic analysis of a fast neutron mutant population resource in soybean -
Bolon, Y.E., Haun, W.J., Xu, W., Grant, D.M., Gerhardt, D.J., Albert, T.J., Richmond, T., Jeddeloh, J.A., Muehlbauer, G., Orf, J., Naeve, S., Stupar, R.M., Vance, C.P. 2011. Phenotypic and genomic analysis of a fast neutron mutant population resource in soybean [abstract]. XIX Plant and Animal Genome Conference Proceedings, January 15-19, 2011, San Diego, California. Abstract No. P390. Available: http://www.intl-pag.org/19/abstracts/P05f_PAGXIX_390.html.
Gene expression patterns are correlated with genomic and genic structure in soybean Reprint Icon -
Woody, J.L., Severin, A., Bolon, Y.E., Joseph, B., Diers, B.W., Farmer, A.T., Weeks, N.T., Muehlbauer, G.J., Nelson, R., Grant, D.M., Specht, J.E., Graham, M.A., Cannon, S.B., May, G.D., Vance, C.P., Shoemaker, R.C. 2011. Gene expression patterns are correlated with genomic and genic structure in soybean. Genome. 54(1):10-18.
Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR_1.0) in soybean Reprint Icon -
Song, Q., Jia, G., Zhu, Y., Hwang, E., Hyten, D.L., Cregan, P.B., Grant, D.M., Nelson, R. 2010. Abundance of SSR motifs and development of candidate polymorphic SSR markers (BARCSOYSSR_1.0) in soybean. Crop Science. 50:1950-1960.
Integration of draft sequence and physical map as framework for genomic research in soybean (Glycine max) -
Ha, J., Abernathy, B., Grant, D.M., Wu, X., Nelson, W., Stacey, G., Shoemaker, R.C., Jackson, S. 2012. Integration of draft sequence and physical map as framework for genomic research in soybean (Glycine max). Biomed Central (BMC) Genomics. 2(3):321-329.
An integrative approach to genomic introgression mapping -
Severin, A.J., Peiffer, G., Xu, W.W., Hyten, D.L., Bucciarelli, B., O'Rourke, J.A., Bolon, Y.E., Grant, D.M., Farmer, A.D., May, G.D., Vance, C.P., Shoemaker, R.C., Stupar, R.M. 2010. An integrative approach to genomic introgression mapping. Plant Physiology. 154(1):3-12.
Applying Small-Scale DNA Signatures as an Aid in Assembling Soybean Chromosome Sequences Reprint Icon -
Peto, M.F., Grant, D.M., Shoemaker, R.C., Cannon, S.B. 2010. Applying small-scale DNA signatures as an aid in assembling soybean chromosome sequences. Advances in Bioinformatics. DOI:10.1155/2010/976792.
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome Reprint Icon -
Severin, A.J., Woody, J.L., Bolon, Y.E., Joseph, B., Diers, B.W., Farmer, A.D., Muehlbauer, G.J., Nelson, R., Grant, D.M., Specht, J.E., Graham, M.A., Cannon, S.B., May, G.D., Vance, C.P., Shoemaker, R.C. 2010. RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. Biomed Central (BMC) Plant Biology. 10:610.
SoyTEdb: A Comprehensive Database of Transposable Elements in the Soybean Genome -
Du, J., Grant, D.M., Tian, Z., Nelson, R., Zhu, L., Shoemaker, R.C., Ma, J. 2010. SoyTEdb: A Comprehensive Database of Transposable Elements in the Soybean Genome. Biomed Central (BMC) Genomics. 11:113.
Genome Sequence of the Paleopolyploid Soybean (Glycine max (L.) Merr.) -
Schmutz, J., Cannon, S.B., Schlueter, J., Ma, J., Hyten, D.L., Song, Q., Mitros, T., Nelson, W., May, G.D., Gill, N., Peto, M.F., Shu, S., Goodstein, D., Thelen, J.J., Cheng, J., Sakurai, T., Umezawa, T., Shinozaki, K., Du, J., Bhattacharyya, M., Sandhu, D., Grant, D.M., Joshi, T., Libault, M., Zhang, X., Hguyen, H., Valliyodan, B., Xu, D., Futrell-Griggs, M., Abernathy, B., Hellsten, U., Berry, K., Grimwood, J., Yu, Y., Wing, R.A., Cregan, P.B., Stacey, G., Specht, J., Rokhsar, D., Shoemaker, R.C., Jackson, S. 2010. Genome Sequence of the Paleopolyploid Soybean (Glycine max (L.) Merr.). Nature. 463:178-183.
SSWAP: A Simple Semantic Web Architecture and Protocol for Semantic Web Services Reprint Icon -
Gessler, D.D., Schiltz, G.S., May, G.D., Avraham, S., Town, C.D., Grant, D.M., Nelson, R. 2009. SSWAP: A Simple Semantic Web Architecture and Protocol for Semantic Web Services. BMC Bioinformatics. 10:309doi:10.1186/1471-2105-10-309.
SoyBase, The USDA-ARS Soybean Genetics and Genomics Database Reprint Icon -
Grant, D.M., Nelson, R., Cannon, S.B., Shoemaker, R.C. 2009. SoyBase, The USDA-ARS Soybean Genetics and Genomics Database. Nucleic Acids Research. Doi: 10.1093/nar/gkp798.
Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response -
O'Rourke, J.A., Nelson, R., Grant, D.M., Schmutz, J., Grimwald, J., Cannon, S.B., Vance, C.P., Graham, M.A., Shoemaker, R.C. 2009. Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response. Biomed Central(BMC)Genomics. 10:376. Available: http://www.biomedcentral.com/1471-2164/10/376.
Soybase and The Soybean Breeder's Toolbox: Updated Features and New Data -
Grant, D.M., Nelson, R., Cannon, S.B., Shoemaker, R.C. 2009. Soybase and The Soybean Breeder's Toolbox: Updated Features and New Data [abstract]. Plant and Animal Genome Conference. Poster No. P364.
SoyBase Soybean Ontologies: Pathways to Soybean Growth and Developmental Description -
Nelson, R., Grant, D.M., Cannon, S.B., Shoemaker, R.C. 2009. SoyBase Soybean Ontologies: Pathways to Soybean Growth and Developmental Description [abstract]. Plant and Animal Genome Conference. Poster No. P797.
SoyBase Simple Semantic Web Architecture and Protocol (SSWAP) Services -
Nelson, R., Grant, D.M., Gangwal, P., Shoemaker, R.C. 2009. SoyBase Simple Semantic Web Architecture and Protocol (SSWAP) Services [abstract]. Plant and Animal Genome Conference. Poster No. P798.
Identification of Candidate Signaling Genes Including Regulators of Chromosome Condensation 1 Protein Family Differentially Expressed in the Soybean - Phytophthora Sojae Interaction -
Narayanan, N.N., Tasma, I.M., Grant, D.M., Shoemaker, R.C., Bhattacharyya, M.K. 2009. Identification of Candidate Signaling Genes Including Regulators of Chromosome Condensation 1 Protein Family Differentially Expressed in the Soybean - Phytophthora Sojae Interaction. Journal of Theoretical and Applied Genetics. 118(3):399-412.
The Soybean Breeder’s Toolbox: Updated Features and New Data -
Microsatellite Discovery from BAC End Sequences and Genetic Mapping to Anchor the Soybean Physical and Genetic Maps -
Shoemaker, R.C., Grant, D.M., Olson, T., Warren, W.C., Wing, R., Yu, Y., Kim, H., Cregan, P.B., Joseph, B., Futrell-Griggs, M., Nelson, W., Davito, J., Walker, J., Wallis, J., Kremitski, C., Scheer, D., Clifton, S., Graves, T., Nguyen, H., Wu, X., Luo, M., Dvorak, J., Nelson, R., Cannon, S.B., Thomkins, J., Schmutz, J., Stacey, G., Jackson, S. 2008. Microsatellite Discovery from BAC End Sequences and Genetic Mapping to Anchor the Soybean Physical and Genetic Maps. Genome. 51:294-302.
BIOINFORMATIC RESOURCES FOR SOYBEAN GENETIC AND GENOMIC RESEARCH -
Grant, D.M., Nelson, R., Graham, M.A., Shoemaker, R.C. 2008. Bioinformatic resources for soybean genetic and genomic research. In: Stacey, Gary, editor. Genetics and Genomics of Soybean. New York, New York. Springer. p. 141-162.
THE SOYBEAN BREEDER'S TOOLBOX: INTEGRATION OF GENETIC AND MOLECULAR DATA FOR SOYBEAN -
Nelson, R., Grant, D.M., Shoemaker, R.C. 2007. The soybean breeder's toolbox: integration of genetic and molecular data for soybean [abstract]. Plant and Animal Genome Conference. Paper No. P851.
THE SOYBEAN BREEDER'S TOOLBOX: A NEW RESOURCE FOR SOYBEAN GENETIC AND GENOMIC INFORMATION -
Nelson, R., Grant, D.M., Shoemaker, R.C. 2006. The soybean breeder's toolbox: a new resource for soybean genetic and genomic information [abstract]. Biennial Conference on Molecular and Cellular Biology of the Soybean. p. 4.
THE LEGUME INFORMATION RESOURCE (LIS): AN INTEGRATED RESOURCE FOR COMPARATIVE LEGUME BIOLOGY -
Gonzales, M., Archuleta, E., Farmer, A., Gajendran, K., Grant, D.M., Shoemaker, R.C., Beavis, W., Waugh, M. 2005. The legume information resource (lis): an integrated resource for comparative legume biology. Nucleic Acids Research. 33:D660-D665.
PRELIMINARY ANALYSIS OF SINGLE NUCLEOTIDE POLYMORPHISMS IN SOYBEAN DETECTED B ESTMINER ANALYSIS -
Nelson, R., Grant, D.M., Shoemaker, R.C. 2005. Preliminary analysis of single nucleotide polymorphisms in soybean detected b estminer analysis. Plant and Animal Genome Abstracts. p. 433.
THE LEGUME INFORMATION RESOURCE (LIS): AN INTEGRATED INFORMATION RESOURCE FOR COMPARATIVE LEGUME BIOLOGY -
Gonzales, M.D., Beavis, B., Gajendran, K., Farmer, A., Archuletal, E., Grant, D.M., Nelson, R., Shoemaker, R.C., Waugh, M. 2005. The legume information resource (lis): an integrated information resource for comparative legume biology. Plant and Animal Genome Abstracts. p. 873.
ESTMINER: A SUITE OF PROGRAMS FOR GENE AND ALLELE IDENTIFICATION -
Nelson, R., Grant, D.M., Shoemaker, R.C. 2004. Estminer: a suite of programs for gene and allele identification. Bioinformatics. 21(5):691-693.
MINING EST DATABASES TO RESOLVE EVOLUTIONARY EVENTS IN MAJOR PLANT SPECIES -
Schlueter, J.A., Dixon, P., Granger, C., Grant, D.M., Clark, L., Doyle, J.J., Shoemaker, R.C. 2004. Mining EST databases to resolve evolutionary events in major plant species. Genome. 47:868-876.
SOYBEAN GENOMIC SURVEY: BAC-END SEQUENCES NEAR RFLP AND SSR MARKERS -
GENOME ORGANIZATION IN DICOTS. II: ARABIDOPSIS AS A 'BRIDGING SPECIES' TO RESOLVE GENOME EVOLUTION EVENTS AMONG LEGUMES -
GENOME ORGANIZATION IN DICOTS: I. GENOME DUPLICATION IN ARABIDOPSIS AND SYNTENY BETWEEN SOYBEAN AND ARABIDOPSIS -
SOYBEAN GENOME EVOLUTION -
RFLP MAP OF SOYBEAN -
USING THE WWW AS A GENOMIC INFORMATION RESOURCE -
ACCESSING SOYBASE AND OTHER GENOME DATABASES VIA THE INTERNET -
MOLECULAR CHARACTERIZATION OF IRON DEFICIENCY CHLOROSIS IN SOYBEAN -
QTL IN SOYBASE: A NEW PERSPECTIVE -
NODULATION AND NITROGEN FIXATION IN SOYBASE, A SOYBEAN GENOME DATABASE -
SOYBASE, A DATABASE FOR SOYBEAN GENOME AND GENETIC DATA -
MOLECULAR HYBRIDIZATION -
SOYBASE, A SOYBEAN GENOME DATABASE -
THE UMC MAIZE RFLP MAP AND CORE MARKER SEQUENCES -
ARS News Articles
Last Modified: 5/2/2016
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