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United States Department of Agriculture

Agricultural Research Service

Related Topics

Mary V Duke
Genomics and Bioinformatics Research
Molecular Biologist

Phone: (662) 686-5224
Fax: (662) 686-3567
Room 214

LEE & EXPERIMENT STATION RDS
STONEVILLE , MS 387760038


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
The channel catfish genome sequenc provides insights into the evolution of scale formation in teleosts -
Liu, Z., Liu, S., Yao, J., Bao, L., Jiang, C., Want, R., Sun, L., Li, Y., Zhang, Y., Zhang, J., Zhou, T., Zeng, Q., Fu, Q., Gao, S., Li, N., Koren, S., Jiang, Y., Zimim, A., Xu, P., Phillippy, A., Geng, X., Song, L., Sun, F., Li, C., Want, X., Chen, A., Jin, Y., Yuan, Z., Yang, Y., Tan, S., Peatman, E., Lu, J., Qin, Z., Dunham, R., Li, Z., Sonstegard, T.S., Feng, J., Danzmann, R.G., Schroeder, S.G., Scheffler, B.E., Duke, M.V., Ballard, L.L., Kucuktas, H., Kaltenboeck, L., Liu, H., Armbruster, J., Xie, Y., Kirby, M.A., Tian, Y., Moore Flanagan, M.E., Mu, W., Waldbieser, G.C. 2016. The channel catfish genome sequenc provides insights into the evolution of scale formation in teleosts. Nature Communications. doi:10.1038/ncomms11757.
Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall sythesis, represses lignification, and prolongs elongation Reprint Icon -
Tuttle, J.R., Nah, G., Duke, M.V., Alexander, D.C., Guan, X., Song, Q., Chen, Z.J., Scheffler, B.E., Haigler, C.H. 2015. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall sythesis, represses lignification, and prolongs elongation. Biomed Central (BMC) Genomics. 16:477. doi:10.1186/s12864-015-1708-9.
Development of a large set of microsatellite markers in Zapote Maney (Pouteria sapota (Jacq.) (H.E. Moore & Stearn) and their potential use in the study of the species -
Arias De Ares, R.S., Castillo, J.M., Sobolev, V., Blancarte-Jasso, N.H., Simpson, S.A., Ballard, L.L., Duke, M.V., Liu, X.F., Irish, B.M., Scheffler, B.E. 2015. Development of a large set of microsatellite markers in Zapote Maney (Pouteria sapota (Jacq.) (H.E. Moore & Stearn) and their potential use in the study of the species. Molecules. 20(60):11400-11417.
Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure -
Corrales, J., Fang, X., Thornton, C., Mei, W., Barbazuk, B.W., Duke, M.V., Scheffler, B.E., Willett, K.L. 2014. Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure. Comparative Biochemistry and Physiology. Part C 163 (2014): 37-46.
The haustorial transcriptomes of Uromyces appendiculatus and Phakopsora pachyrhizi and their candidate effector families Reprint Icon -
Link, T.I., Lang, P., Scheffler, B.E., Duke, M.V., Graham, M.A., Cooper, B., Tucker, M.L., Van De Mortel, M., Voegele, R.T., Mendgen, K., Baum, T.J., Whitham, S.A. 2014. The haustorial transcriptomes of Uromyces appendiculatus and Phakopsora pachyrhizi and their candidate effector families. Molecular Plant Pathology. 15(4):379-393. DOI:10.1111/mpp.12099.
Complete genome sequence of channel catfish gastrointestinal sepicemia isolate Edwardsiella tarda C07-087 Reprint Icon -
Tekedar, H.C., Karsi, A., Williams, M.L., Vamenta, S., Banes, M.M., Duke, M.V., Scheffler, B.E., Lawrence, M.L. 2013. Complete genome sequence of channel catfish gastrointestinal sepicemia isolate Edwardsiella tarda C07-087. American Society for Microbiology. 1(6):e00959-13. doi:10.1128/genomeA.00959-13.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres -
Paterson, A.H., Wendel, J.F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K.C., Shu, S., Udall, J., Duke, M.V., Scheffler, B.E., Scheffler, J.A. 2012. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 492:423-428.
Development and characterization of seashore paspulum SSR markers and identification of markers associated with salt tolerance -
Harris-Shultz, K.R., Raymer, P., Duke, M.V., Ballard, L.L., Scheffler, B.E., Arias De Ares, R.S. 2012. Development and characterization of seashore paspulum SSR markers and identification of markers associated with salt tolerance. Visions for a Sustainable Planet. ASA, CSSA, and SSSA 2012 International Annual Meetings. Oct. 21-24, 2012, Cincinnati, OH. Agronomy Abstracts. p. 143.
Batch Isolation of Microsatellites for Tropical Plant Species Pyrosequencing -
Arias De Ares, R.S., Irish, B.M., Ballard, L.L., Duke, M.V., Liu, X.F., Simpson, S.A., Scheffler, B.E. 2010. Batch Isolation of Microsatellites for Tropical Plant Species Pyrosequencing. Plant and Animal Genome. Abstract P089.
Metagenomic analysis of the turkey gut RNA virus community Reprint Icon -
Day, J.M., Ballard, L.L., Duke, M.V., Scheffler, B.E., Zsak, L. 2010. Metagenomic analysis of the turkey gut RNA virus community. Virology Journal. 7:313.
UPIC + GO: Zeroing in on informative markers -
Ford, D., Arias, R.S., Ballard, L.L., Scheffler, B.E., Duke, M.V., Simpson, S.A., Newsome, A. 2010. UPIC + GO: Zeroing in on informative markers. Eighth Annual Rocky Mountain Bioinformatics Conference, International Society of Computational Biology (ISCB), December 09-11, 2010, Aspen, CO. Meeting Proceedings.
A First Generation Bac-Based Physical Map of the Channel Catfish Genome -
Quiniou, S.M., Waldbieser, G.C., Duke, M.V. A first generation bac-based physical map of the channel catfish genome. Biomed Central (BMC) Genomics.
AMINO- AND UREA-SUBSTITUTED THIAZOLES INHIBIT PHOTOSYNTHETIC ELECTRON TRANSFER -
STRATEGIES FOR THE DISCOVERY OF BIOACTIVE PHYTOCHEMICALS -
EVALUATION OF FERULIC ACID FOR CONTROLLING THE MUSTY-ODOR CYANOBACTERIUM OSCILLATORIA PERORNATA IN AQUACULTURE PONDS -
SEQUESTRATION OF PHYTOTOXINS BY PLANTS: IMPLICATIONS FOR COMMERCIAL BIOSYNTHETIC PRODUCTION -
SELECTIVE BLUE-GREEN ALGICIDES FOR MANAGEMENT OF THE "OFF FLAVOR" PROBLEM IN CATFISH AQUACULTURE -
NATURAL PRODUCTS AS LEADS FOR NEW HERBICIDE MODES OF ACTION -
PROTOPORPHYRINOGEN OXIDASE INHIBITORS -- THEIR CURRENT AND FUTURE ROLES -
Last Modified: 5/2/2016
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