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United States Department of Agriculture

Agricultural Research Service

Related Topics

Michael Cooley (Mike)
Produce Safety and Microbiology Research
Genetics

Phone: (510) 559-5986
Fax: (510) 559-6162
Room WAB200-E

USDA, ARS, PWA, WRRC-PSM
800 BUCHANAN STREET
ALBANY , CA 94710

Projects
Ecology and Detection of Human Pathogens in the Produce Production Continuum
Appropriated (D)
  Accession Number: 430338

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
An environmental shiga toxin-producing Escherichia coli O145 clonal population exhibits high-level phenotypic variation that includes virulence traits -
Carter, M.Q., Quinones, B., He, X., Louie, J.W., Zhong, W.W., Lee, B.G., Yambao, J.C., Mandrell, R.E., Cooley, M.B. 2015. An environmental shiga toxin-producing Escherichia coli O145 clonal population exhibits high-level phenotypic variation that includes virulence traits. Applied and Environmental Microbiology. doi: 10.1128/AEM.03172-15.
Male-specific coliphages for source tracking fecal contamination in irrigation waters and prevalence of Shiga toxigenic Escherichia coli in a major produce production region of central coast of California -
Ravva, S.V., Sarreal, C.Z., Cooley, M.B. 2015. Male-specific coliphages for source tracking fecal contamination in irrigation waters and prevalence of Shiga toxigenic Escherichia coli in a major produce production region of central coast of California. Environmental Science: Processes & Impacts. doi: 10.1039/C4EM00537F.
High genotypic and phenotypic similarity among Shiga toxin-producing Escherichia coli O111 environmental and outbreak strains Reprint Icon -
Diodati, M.E., Bates, A.H., Cooley, M.B., Walker, S., Mandrell, R., Brandl, M. 2015. High genotype and phenotypic similarity among Shiga toxin-producing Escherichia coli O111 environmental and outbreak strains. Foodborne Pathogens and Disease. 12:235-243.
Fitness of outbreak and environmental strains of Escherichia coli O157:H7 in aerosolizable soil and association of clonal variation in stress gene regulation -
Ravva, S.V., Cooley, M.B., Sarreal, C.Z., Mandrell, R.E. 2014. Fitness of outbreak and environmental strains of Escherichia coli O157:H7 in aerosolizable soil and association of clonal variation in stress gene regulation. Pathogens. 3:528-548. DOI: 10.3390/pathogens3030528.
Top-down proteomic identification of Shiga toxin 2 subtypes from Shiga toxin-producing Escherichia coli by Matrix-Assisted Laser Desorption Ionization-Tandem Time of Flight mass spectrometry -
Fagerquist, C.K., Zaragoza, W.J., Sultan, O., Woo, N., Quinones, B., Cooley, M.B., Mandrell, R.E. 2014. Top-down proteomic identification of Shiga toxin 2 subtypes from Shiga toxin-producing Escherichia coli by Matrix-Assisted Laser Desorption Ionization-Tandem Time of Flight mass spectrometry. Applied and Environmental Microbiology. 8(9):2928-2940.
Comparison of subtypes of Listeria monocytogenes isolates from naturally contaminated watershed samples using a combination of non-selective and selective enrichment methods -
Gorski, L.A., Walker, S., Liang, A.S., Nguyen, K.M., Govoni, J.A., Carychao, D.K., Cooley, M.B., Mandrell, R.E. 2014. Comparison of subtypes of Listeria monocytogenes isolates from naturally contaminated watershed samples using a combination of non-selective and selective enrichment methods. PLoS One. 9(3):e92467. DOI: 10.1371/journal.pone.009246.
Prevalence of Shiga toxin producing Escherichia coli, Salmonella enterica and Listeria monocytogenes at public access watershed sites in a California central coast agricultural region -
Cooley, M.B., Quinones, B., Oryang, D., Mandrell, R.E., Gorski, L.A. 2014. Prevalence of Shiga toxin producing Escherichia coli, Salmonella enterica and Listeria monocytogenes at public access watershed sites in a California central coast agricultural region. Frontiers in Cellular and Infection Microbiology. 4:30.
Top-down proteomic identification of Shiga toxin 2 variants from Shiga toxin-producing Escherichia coli (STEC) using MALDI-TOF-TOF-MS/MS-PSD -
Fagerquist, C.K., Zaragoza, W.J., Sultan, O., Woo, N., Quinones, B., Swimley, M.S., Cooley, M.B., Mandrell, R.E. 2013. Top-down proteomic identification of Shiga toxin 2 variants from Shiga toxin-producing Escherichia coli (STEC) using MALDI-TOF-TOF-MS/MS-PSD. ASMS20139833.3125VER.1.pdf.
Development of a robust methos for isolation of shiga toxin positive Escherichia coli (STEC) from fecal, plant, soil and water samples from leafy greens production region in California -
Cooley, M.B., Jay-Russell, M., Atwill, E.R., Carychao, D.K., Nguyen, K.M., Quinones, B., Patel, R., Walker, S., Swimley, M., Pierre-Jerome, E., Gordus, A., Mandrell, R.E. 2013. Development of a robust methos for isolation of shiga toxin positive Escherichia coli (STEC) from fecal, plant, soil and water samples from leafy greens production region in California. PLoS One. 8(6):e65716. doi:10.1371/journal.pone.0065716.
Occurrence of generic E. coli, E. coli O157:H7 and Salmonella spp. in water and sediment from leafy green produce farms and streams on the Central California coast -
Benjamin, L., Atwill, E.R., Jay-Russell, M., Cooley, M.B., Carychao, D.K., Gorski, L.A., Mandrell, R.E. 2013. Occurrence of generic E. coli, E. coli O157:H7 and Salmonella spp. in water and sediment from leafy green produce farms and streams on the Central California coast. International Journal of Food Microbiology. 10.1016/j.ijfoodmicro.2013.04.003 165(1)65-76.
Quantification and characterization of mucosa-associated and intracellular Escherichia coli in inflamatory bowel disease Reprint Icon -
Elliott, T.R., Hudspith, B.N., Wu, G., Cooley, M.B., Parkes, G., Quinones, B., Randall, L., Mandrell, R.E., Fagerquist, C.K., Brostoff, J., Rayment, N.B., Boussioutas, A., Petrovska, L., Sanderson, J.D. 2013. Quantification and characterization of mucosa-associated and intracellular Escherichia coli in inflamatory bowel disease. Inflammatory Bowel Diseases. 19(11):2326-2338.
Genotypic analyses of Shiga toxin-producing Escherichia coli O157 and non-O157 recovered from feces of domestic animals in rural farms in Mexico -
Amezquita-Lopez, B.A., Quinones, B., Cooley, M.B., Leon-Felix, J., Castro-Del Campo, N., Mandrell, R.E., Jimenez, M., Chaidez, C. 2012. Genotypic analyses of Shiga toxin-producing Escherichia coli O157 and non-O157 recovered from feces of domestic animals in rural farms in Mexico. PLoS One. 7(12):e51565. doi:101371/journal.pone.0051565.
Evidence of norovirus (NV)in a major produce production region watershed and a low density microarray strategy for detecting NV(Abstract) -
O-antigen and virulence profiling of Shiga toxin-producing Escherichia coli by a rapid and cost-effective DNA microarray colorimetric method Reprint Icon -
Quinones, B., Swimley, M.S., Narm, K., Patel, R.N., Cooley, M.B., Mandrell, R.E. 2012. O-antigen and virulence profiling of Shiga toxin-producing Escherichia coli by a rapid and cost-effective DNA microarray colorimetric method. Frontiers in Cellular and Infection Microbiology. 10.3389/fcimb.2012.00061/full.
Distinct PFGE and MLVA Genotypes of Shiga Toxin-Producing Escherichia coli (STEC)Recovered from Feces of Farm Animals in the Culiacan Valley, Mexico(Abstract) -
Selective recovery by different culture methods of Shiga toxin-producing Escherichia coli genotypes from a major produce production region in California(Abstract) -
Curli variants of enterohemorrhagic Escherichia coli O157:H7 display distinct survival fitness Reprint Icon -
Carter, M.Q., Brandl, M., Louie, J.W., Kyle, J.L., Carychao, D.K., Cooley, M.B., Parker, C., Bates, A.H., Mandrell, R.E. 2011. Curli variants of enterohemorrhagic Escherichia coli O157:H7 display distinct survival fitness. Applied and Environmental Microbiology. 77:3685-3695.
Sensitive detection of Shiga toxin 2 and some of its Stx 2 variants in environmental samples by a novel immuno-PCR assay -
He, X., Qi, W., Quinones, B., Mcmahon, S.A., Cooley, M.B., Mandrell, R.E. 2011. Sensitive detection of Shiga toxin 2 and some of its Stx 2 variants in environmental samples by a novel immuno-PCR assay. Applied and Environmental Microbiology. 77(1):3558-3564. doi:10.1128/AEM.02205-10.
Use of Photopolymerization for Genotyping Shiga Toxin-Producing Escherichia coli Recovered from Produce Production Regions in California -
Prevalence, distribution and diversity of salmonella enterica in a major produce region of California -
Gorski, L.A., Parker, C., Liang, A.S., Cooley, M.B., Jay-Russell, M., Gordus, A., Atwill, R.E., Mandrell, R.E. 2011. Prevalence, distribution and diversity of salmonella enterica in a major produce region of California. Applied and Environmental Microbiology. 77:2734-2748.
Tandem Repeat Stability in Escherichia coli O157:H7 is Dependent on Environmental Stress -
Effects of Environmental Stress on Stability of Tandem Repeat in Escherichia coli O157:H7 -
Cooley, M.B., Carychao, D.K., Nguyen, K.M., Whitehand, L.C., Mandrell, R.E. 2010. Effects of Environmental Stress on Stability of Tandem Repeat in Escherichia coli O157:H7. Applied and Environmental Microbiology. 76(10)3398-3400
Phenotypic Divergence in Curli Variants of Enterohemorrhagic Escherichia coli O157:H7 -
Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics -
Fagerquist, C.K., Garbus, B.R., Miller, W.G., Williams, K.E., Yee, E., Bates, A.H., Boyle, S., Harden, L.A., Cooley, M.B., Mandrell, R.E. 2010. Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics. Analytical Chemistry. 82:2717-2725.
An Engineered R-Type Pyocin Is a Highly Specific and Sensitive Bactericidal Agent for the Food-Borne Pathogen Escherichia coli O157:H7 -
Scholl, D., Cooley, M.B., Williams, S.R., Gebhart, D., Martin, D., Bates, A.H., Mandrell, R.E. 2009. An Engineered R-Type Pyocin Is a Highly Specific and Sensitive Bactericidal Agent for the Food-Borne Pathogen Escherichia coli O157:H7. Antimicrobial Agents and Chemotherapy. 53(7):3074-3080.
Escherichia coli O157:H7 strains isolated from environmental sources differ significantly in acid resistance compared to human outbreak strains Reprint Icon -
Oh, D., Pan, Y., Berry, E.D., Cooley, M.B., Mandrell, R.E., Breidt, F. 2009. Escherichia coli O157:H7 strains isolated from environmental sources differ significantly in acid resistance compared to human outbreak strains. Journal of Food Protection. 72(3):503-509.
Incidence and tracking of Escherichia coli O157:H7 in a major produce production region in California -
Cooley, M.B., Carychao, D.K., Crawford-Miksza, L., Jay, M.T., Myers, C., Rose, C., Key, C., Farrar, J., Mandrell, R.E. 2007. Incidence and tracking of Escherichia coli O157:H7 in a major produce production region in California. PLoS One. 0001159, www.plosone.org
Survival of Escherichia coli O157:H7 Isolates in Acetic Acid Solutions is Influenced by the Source of Isolation -
Oh DH, Pan Y, Berry ED, Mandrell RE, Cooley MB, Breidt F. 2007. Survival of Escherichia coli O157:H7 Isolates in Acetic Acid Solutions is Influenced by the Source of Isolation. International Association for Food Protection Proceedings.
Escherichia coli O157:H7 in Feral Swine Near Spinach Fields and Cattle, Central California Coast -
Jay, M.T., Cooley, M.B., Carychao, D.K., Wiscomb, G.W., Sweitzer, R.A., Crawford-Miksza, L., Farrar, J.A., Lau, D.K., O'Connell, J., Millington, A., Asmundson, R.V., Atwill, E.R., Mandrell, R.E. 2007. Escherichia coli O157:H7 in Feral Swine Near Spinach Fields and Cattle, Central California Coast. Emerging Infectious Diseases. 13:12.
ESCHERICHIA COLI O157:H7 SURVIVAL AND GROWTH ON LETTUCE IS ALTERED BY THE PRESENCE OF EPIPHYTIC BACTERIA -
Cooley, M.B., Chao, D.K., Mandrell, R.E. 2006. Escherichia coli O157:H7 survival and growth on lettuce is altered by the presence of epiphytic bacteria. Journal of Food Protection.69:10:2329-2335
COLONIZATION OF ARABIDOPSIS THALIANA WITH SALMONELLA ENTERICA AND ENTEROHEMORRHAGIC ESCHERICHIA COLI 157:H7 AND COMPETITIAN BY ENTEROBACTOR ASBURIAE -
COOLEY, M.B., MILLER, W.G., MANDRELL, R.E. COLONIZATION OF ARABIDOPSIS THALIANA WITH SALMONELLA ENTERICA AND ENTEROHEMORRHAGIC ESCHERICHIA COLI 157:H7 AND COMPETITIAN BY ENTEROBACTOR ASBURIAE. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2003. v 68(8) p.4915-4926
ARS News Articles
Last Modified: 5/2/2016
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