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Lesion Nematode LSU(26-28S) rDNA Maximum Likelihood Phylogeny
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Lesion Nematode LSU(26-28S) rDNA Maximum Likelihood Phylogeny

With links to female descriptions and Genbank accession.

 


outgroup hirschmanni bellli  Hirschmanniella belliU47556
suppoprt value of 69 for species group P. vulnusPratylenchus teres2AF196353
Support value of 69 for species group P. vulnus and P. crenatusPratylenchus vulnusU47547
Support value of 69 for species group P. vulnus and P. crenatusPratylenchus crenatusU47549
Support value of 85 for species group P. neglectus and P. zeae. Support value of 30 for species group P. neglectus, P. zeae,P. thornei, P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae, P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeaePratylenchus neglectusU47548
Pratylenchus zeaeAF303950
Support value of 29 for species group P. thornei, P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae, P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeaePratylenchus thorneiU47550
Support value of 97 for species group P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae. Support value of 32 for species group P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae, P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeaePratylenchus hexincisusAF303949
Support value of 99 for species group P. penetrans, P. arlingtoni, P. fallax, P. convallariaePratylenchus penetransU47546
Support value of 100 for species group P. arlingtoni, P. fallax, P. convallariaePratylenchus arlingtoni1AF307328
Support value of 100 for species group P. arlingtoni, P. fallax, P. convallariaePratylenchus fallax, P convallariae1AF264181
Support value of 58 for species group P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeaePratylenchus loosiAF170439
Support value of 67 for species group P. coffeae and P. gutierreziPratylenchus coffeaeAF170428 (C4)
Support value of 67 for species group P. coffeae and P. gutierreziPratylenchus gutierreziAF170442
Support value of 67 for species group P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeaePratylenchus scribneriU47551
Support value of 80 for species group P. agilis, P. brachyurus and P. pseudocoffeaePratylenchus agilisAF196352
Support value of 76 for species group P. brachyurus and P. pseudocoffeaePratylenchus brachyurusU47553
Support value of 76 for species group P. brachyurus and P. pseudocoffeaePratylenchus pseuocoffeaeAF170444

D3 Tree Manuscript      D2-D3 Tree MS     Thomas Lab D3 Database
    Pratylenchus project at Univ. NE     Literature
1.Nematology MS      2.African Plant Protection MS

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Quartet-Puzzling Maximum Likelihood Molecular Tree generated by PAUP* ver.4.08b (Sinauer Associates, Sunderland, MA) on a Clustal W (European Bioinformatics Institute) alignment using the Hasegawa-Kishino-Yano-1985 model on 308 nucleotides; support values for quartets from 1,000 puzzling steps. Mention of trade name or commercial products is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U. S. Department of Agriculture.

 

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Last Modified: 8/12/2016
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