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United States Department of Agriculture

Agricultural Research Service

Plant Genome Mapping
item Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. x G. barbadense L.) RIL population (Nov 2014)
item Assessment of chilling injury and molecular marker analysis in cucumber cultivars (Cucumis sativus L.) (Nov 2014)
item Identification of major genes affecting nutritional element concentrations in rice grains (Nov 2014)
item Rice Genotype Variation in Leaf-Grain Element Concentration Associations (Nov 2014)
item Characterization of Thinopyrum species for wheat stem rust resistance and ploidy level (Nov 2014)
item Putative paternal factors controlling chilling tolerance in Korean market-type cucumber (Cucumis sativus L.) (Oct 2014)
item The chloroplast psbK-psbI intergenic region, a potential genetic marker for broad sectional relationships in Anthurium (Oct 2014)
item Barley (Sep 2014)
item Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean (Sep 2014)
item Assessing genomic selection prediction accuracy in a dynamic barley breeding (Sep 2014)
item Seasonal trends in nonstructural carbohydrates in cool- and warm- season grasses (Sep 2014)
item SCNProDB: A database for the identification of soybean cyst nematode proteins (Sep 2014)
item Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean (Sep 2014)
item Global analysis of the HrpL regulon in the plant pathogen Pseudomonas syringae pv. tomato DC3000 reveals new regulon members with diverse functions (Aug 2014)
item Occurrence and characterization of Bean common mosaic virus strain NL1 in Iowa (Aug 2014)
item Improvement of drought and salt tolerance in Kentucky bluegrass (Aug 2014)
item Registration of two confection sunflower germplasm Lines, HA-R10 and HA-R11, Resistant to sunflower rust (Aug 2014)
item Differential inheritance of pepper (capsicum annum) fruit pigments results in black to violet fruit color (Aug 2014)
item Quantitative trait locus analysis of seed sulfur containing amino acids in two recombinant inbred line populations of soybean (Aug 2014)
item Barley (Hordeum vulgare L.) low phytic acid 1-1: an endosperm-specific filial determinant of seed total phosphorus (Jul 2014)
item A high-density SNP map of sunflower derived from RAD-sequencing facilitating fine-mapping of the rust resistance gene R12 (Jul 2014)
item Methods for assessing infestations of sunflower stem weevil (Coleoptera: Curculionidae) in sunflower stems (Jul 2014)
item Phytotoxin solanapyrone A produced by Ascochyta rabiei and Alternaria solani is nonessential for pathogenicity, but likely plays ecological roles (Jul 2014)
item Pspto_3380 and Pspto_3381: a Two-Component System That Influences the Virulence of Pseudomonas Syringae Pv. Tomato Dc3000 (Jul 2014)
item Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI) (Jul 2014)
item What roles do fungal secondary metabolites play in interactions between Ascochyta fungi and cool season food legumes? (Jul 2014)
item Biotype differences for resistance to Russian wheat aphid in barley (Jul 2014)
item Biogas energy production from tropical biomass wastes by anaerobic digestion (Jun 2014)
item Zn2+ blocks annealing of complementary single-stranded DNA in a sequence-selective manner (Jun 2014)
item Rice lines with high leaf mineral nutrient levels (Jun 2014)
item Rice lines with high leaf mineral nutrient levels (Jun 2014)
item A Snp Genotyping Array for Hexaploid Oat (Avena Sativa L.) (Jun 2014)
item The American cranberry: first insights into the whole genome of a species adapted to bog habitat (Jun 2014)
item Genetic control of rhizomes and genomic localization of a major-effect growth habit QTL in perennial wildrye (Jun 2014)
item Orchardgrass heading dates and variation within constans genes (Jun 2014)
item Identification of novel rice low phytic acid mutations via TILLING by sequencing (Jun 2014)
item Forage breeding and genetics at the Forage and Range Research Laboratory (Jun 2014)
item Molecular cloning and characterization of a ToxA-like gene from the maize pathogen Cochliobolus heterostrophus (Jun 2014)
item Cultivar x binary mixture interaction effect on agronomic traits in orchardgrass (Jun 2014)
item Molecular mapping of three nuclear male sterility mutant genes in cultivated sunflower (Helianthus annuus L.) (Jun 2014)
item Uptake of Al, As, Cr, Cd, Cu, Fe, Mn, Ni, Pb, Sr, and Zn in native wheatgrasses, wildryes, and bluegrass on three metal-contaminated soils from Montana (Jun 2014)
item Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication (Jun 2014)
item Ecological adaptation of Shepherdia rotundifolia to conditions in its native range (Jun 2014)
item Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred populations of soybean (May 2014)
item A roadmap for functional structural variants in the soybean genome (May 2014)
item Manipulation of two alpha-endo-beta-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots (May 2014)
item Association mapping of grain hardness, polyphenol oxidase, total phenolics, amylose content, and ß-glucan in US barley breeding germplasm (May 2014)
item Tobacco mosaic virus: Proof by synthesis (May 2014)
item De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum (May 2014)
item Genomic selection for quantitative adult plant stem rust resistance in wheat (May 2014)
item Rising atmospheric CO2 lowers food zinc, iron, and protein concentrations (May 2014)
item Should ranchers value sagebrush? Why we need sagebrush (May 2014)
item Ecologically appropriate plant materials for functional restoration of rangelands (May 2014)
item A nomenclatural guide and simplified key to the squirreltail taxa (May 2014)
item Current efforts to develop perennial wheat and domesticate Thinopyrum intermedium as a perennial grain (May 2014)
item Interactions of genotype and glutenin subunit composition on breadmaking quality of durum 1AS•1AL-1DL translocation lines (May 2014)
item Notice of release of Antelope Creek and Pleasant Valley germplasms of bottlebrush squirreltail (May 2014)
item Inferring outcrossing in the homothallic fungus Sclerotinia sclerotiorum using linkage disequilibrium decay (Apr 2014)
item Distinct copy number, coding sequence and locus methylation patterns underlie Rhg1-mediated soybean resistance to soybean cyst nematode (Apr 2014)
item Net Venn - An integrated network analysis web platform for gene lists (Apr 2014)
item Unraveling the secrets of rice wild species (Apr 2014)
item Ectopic expression of Arabidopsis genes encoding salicylic acid- and jasmonic acid-related proteins confers partial resistance to soybean cyst nematode (Heterodera glycines) in transgenic soybean roots (Apr 2014)
item A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat (Apr 2014)
item Efficient genome-wide detection and cataloging of EMS-induced mutations using exome capture and next-generation sequencing (Apr 2014)
item Phenotypic performance of timothy accessions under irrigated and non-irrigated conditions (Apr 2014)
item Disentangling methodological and biological sources of gene tree discordance on oryza (poaceae) chromosome 3 (Apr 2014)
item Sources of gene tree discordance on oryza (poaceae) chromosome 3 (Apr 2014)
item Mapping in an apple (Malus x domestica) F1 segregating population based on physical clustering of differentially expressed genes (Apr 2014)
item Effect of wild Helianthus cytoplasms on agronomic and oil characteristics of cultivated sunflower (H. annuus L.) (Apr 2014)
item Biosystematics and evolutions of perennial Triticeae species revealed by genomic analyses (Mar 2014)
item Modification of the expression of two NPR1 suppressors SNC1 and SNI1, in coybean (Glycine max) confers partial resistance to the soybean cyst nematode (Heterodera glycines) (Mar 2014)
item Association mapping of resistance to leaf rust in emmer wheat using high throughput SNP markers (Mar 2014)
item Relationship of apple rootstock dwarfing loci (Dw1, Dw2) with scion leaf and fruit nutrient status (Mar 2014)
item Molecular and comparative mapping of genes governing spike compactness inherited from wild emmer wheat (Mar 2014)
item New germplasm development using synthetic and other approaches to transfer stem rust resistance from tetraploids to hexaploids (Mar 2014)
item Improving germination and establishment of Great Basin legumes (Mar 2014)
item Report of the 2013 uniform regional scab nursery for spring wheat parents (Mar 2014)
item Dw2 a new dwarfing locus in apple rootstocks and relationship to induction of early bearing in apple scions (Mar 2014)
item Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.) (Mar 2014)
item Pericarp strength of sunflower and its value for plant defense against the sunflower moth, Homoeosoma electellum (Mar 2014)
item A genome-wide association study platform built on iPlant cyber-infrastructure (Mar 2014)
item Analysis of the small RNA spf in the plant pathogen Pseudomonas syringae pv. tomato strain DC3000 (Mar 2014)
item Degradation of oxalic acid by the mycoparasite Coniothyrium minitans plays an important role in interacting with Sclerotinia sclerotiorum (Mar 2014)
item Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array (Mar 2014)
item Tassel-Gbs: a High Capacity Genotyping by Sequencing Analysis Pipeline (Feb 2014)
item Sources of resistance to sunflower diseases in a global collection of domesticated USDA plant introductions (Feb 2014)
item Rangeland and warm-season forage grasses (Feb 2014)
item Running head: traits of native and invasive plants (Feb 2014)
item Report on hard red spring wheat varieties grown in cooperative plot and nursery experiments in the spring wheat region in 2013 (Feb 2014)
item Overexpression of four Arabidopsis thaliana NHLgenes in soybean (Glycine max) roots and their effect over resistance to the soybean cyst nematode (Heterodera glycines) (Feb 2014)
item Development and characterization of wheat lines carrying stem rust resistance gene Sr43 derived from Thinopyrum ponticum (Feb 2014)
item Genomic plasticity enables phenotypic variation of Pseudomonas syringae pv. tomato DC3000 (Feb 2014)
item Lotus utahensis: southern great basin legume for possible use in rangeland revegetation (Feb 2014)
item RecTEPsy mediated recombineering in Pseudomonas syringae (Jan 2014)
item Optimal design of preliminary yield trials with genome-wide markers (Jan 2014)
item Genetic mapping using genotyping-by-sequencing in the clonally-propagated cassava (Jan 2014)
item Comprehensive transcriptome assembly of chickpea (Cicer arietinum L.) using Sanger and next generation sequencing platforms: development and applications (Jan 2014)
item Genes and QTLs controlling biomass yield and composition traits in perennial wildrye (Jan 2014)
item Introduction (Jan 2014)
item Uses and potential of DNA technologies in forage, turf, and rangeland crop seed production (Jan 2014)
item Highly fertile intersectional blueberry hybrids of Vaccinium padifolium Section Hemimyrtillus and V. corymbosum Section Cyanococcus (Jan 2014)
item Gramene 2013: Comparative plant genomics resources (Jan 2014)
item Genes and quantitative trait loci controlling biomass yield and forage quality traits in perennial wildrye (Jan 2014)
item Ensembl Genomes 2013: scaling up access to genome-wide data (Jan 2014)
item First report of dodder (Cuscuta pentagona) on chickpea (Cicer arietinum) in the United States (Jan 2014)
item Expression of Arabidopsis genes AtNPR1 and AtTGA2 in transgenic soybean roots of composite plants confers resistance to root-knot nematode (Meloidogyne incognita) (Dec 2013)
item High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding (Dec 2013)
item Disruption of Rpp1-mediated soybean rust resistance by virus-induced gene silencing (Dec 2013)
item Genomic selection in plant breeding (Dec 2013)
item Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon (Dec 2013)
item An algorithm for deciding the number of clusters and validating using simulated data with application to exploring crop population structure (Dec 2013)
item Genotype by environment interaction and the use of unbalanced historical data for genomic selection in an international wheat breeding program (Dec 2013)
item Testing transgenic spring wheat and barley lines for reaction to Fusarium head blight: 2013 Field nursery report (Dec 2013)
item 2013 North Dakota Transgenic Barley Research and Fhb Nursery Report (Dec 2013)
item A modern ampelography: A genetic basis for leaf shape and venation patterning in grape (Nov 2013)
item Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions (Nov 2013)
item Optimal fertilizer N rates and yield-scaled global warming potential in drill seeded rice (Nov 2013)
item Variation for seed phytosterols in sunflower germplasm (Nov 2013)
item Phenotypic diversity and QTL mapping of absorption and translocation of nutrients by apple rootstocks (Nov 2013)
item CottonGen: a genomics, genetics and breeding database for cotton research (Nov 2013)
item DNA fingerprinting of Kentucky bluegrass cultivars and hybrids (Nov 2013)
item Generalizations on the use of leaf element concentrations to accelerate improvement of rice grain nutritional quality (Nov 2013)
item Genetic and field management strategies to enhance the nutritional value of rice grains and limit accumulation of undesirable elements such as arsenic (Nov 2013)
item Biomass and defoliation tolerance of 12 populations of Pseudoroegneria spicata at two densities (Nov 2013)
item Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits (Nov 2013)
item Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots (Oct 2013)
item Genetic considerations in developing germplasm sources of native legumes (Oct 2013)
item Bbgd454: a Database for Transcriptome Analysis of Blueberry Using 454 Sequences (Oct 2013)
item iTAG Barley: A 9-12 curriculum to explore inheritance of traits and genes using Oregon Wolfe barley (Sep 2013)
item Genetic diversity for wheat improvement as a conduit to food security (Sep 2013)
item Genome analysis of 7 Kengyilia (Triticeae Poaceae) species with FISH and GISH (Sep 2013)
item Chromosome engineering for alien gene introgression in wheat: Progress and prospective (Sep 2013)
item Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform (Sep 2013)
item Genomic prediction in maize breeding populations with genotyping-by-sequencing (Sep 2013)
item Backcross introgression of plastomic factors controlling chilling tolerance into elite cucumber (Cucumis sativus L.) germplasm: Early generation recovery of recurrent parent phenotytpe (Sep 2013)
item Using common gardens and AFLP analyses to identify metapopulations of indigenous plant materials for rangeland revegetation in western USA (Sep 2013)
item Genome analysis of nonhost resistance to stem rust in Brachypodium (Sep 2013)
item Synthetic hexaploids derived from under-exploited tetraploids as a new resource for disease resistance in wheat (Sep 2013)
item Unique characteristics of Geneva apple rootstocks (Aug 2013)
item Genetic characterization of Kyrgyzstan fine-leaved Festuca valesiaca germplasm for use in semi-arid low-maintenance turf applications (Aug 2013)
item Microdissection and chromosome painting of the alien chromosome in an addition line of wheat-Thinopyrum intermedium (Aug 2013)
item Comparative transcriptome analysis between the necrotrophic pathogens Sclerotina sclerotiorum and S. trifoliorum (Aug 2013)
item Disease Alert: Stemphylium Blight (Jul 2013)
item De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity (Jul 2013)
item Inheritance and linkage map positions of genes conferring agromorphological traits in Lens culinaris Medik (Jun 2013)
item Natural variation in maize aphid resistance is associated with 2,4-Dihydroxy-7-Methoxy-1,4-Benzoxazin-3-One Glucoside Methyltransferase activity (Jun 2013)
item Genetic diversity and population differentiation of Sclerotinia sclerotiorum collected from canola in China and in USA (Jun 2013)
item Starch physicochemical properties of rice accessions and their association with molecular markers (Jun 2013)
item Uses and potential of DNA technologies in forage, turf, and rangeland crop seed production (Jun 2013)
item Genomic predictability of interconnected bi-parental maize populations (Jun 2013)
item Molecular markers highlight variation within and among Kentucky bluegrass varieties and accessions (May 2013)
item A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress (May 2013)
item A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor (May 2013)
item The effects of relatedness and GxE interaction on prediction accuracies in genomic selection: a study in cassava (May 2013)
item Investigating the role of solanapyrone toxins in Ascochyta blight using toxin-deficient mutants of Asochyta rabiei (May 2013)
item Evaluation of regionally-collected sideoats grama and big galleta grass for wildfire revegetation in the Eastern Upper Mojave Desert (Apr 2013)
item Genetic and field management strategies to for limiting accumulation of arsenic in rice grains (Apr 2013)
item Rhizoctonia root rot of lentil (Feb 2013)
item Analysis of the small RNA P16/RgsA in the plant pathogen Pseudomonas syringae pathovar tomato strain DC3000 (Feb 2013)
item CrcZ and CrcX regulate carbon utilization in Pseudomonas syringae pathovar tomato strain DC3000 (Feb 2013)
item Pseudomonas syringae pv. tomato DC3000 CmaL (PSPTO4723), a DUF1330 family member, is needed to produce L-allo-isoleucine, a precursor for the phytotoxin coronatine (Jan 2013)
item Population genomic and genome-wide association studies of agroclamatic traits in sorghum (Jan 2013)
item Substrate and target sequence lengths influence RecTEPsy recombineering efficiency in Pseudomonas syringae (Nov 2012)
item Picara, An Analytical Pipeline Providing Probabilistic Inference About a Priori Candidates Genes Underlying Genome-Wide Association Qtl in Plants (Nov 2012)
item Root physiological and morphological characteristics of 24 rice varieties selected for diverse grain mineral (Oct 2012)
item Found: genes controlling the nutrient content of the rice grain (Oct 2012)
item Rice root physiological and morphological traits of diverse genotypes grown in different media (Oct 2012)
item Rice bran phytochemicals and dietary colon chemoprevention teamwork (Mar 2012)
item Genotype and environment effects on Tocopherol, Tocotrienol, and y-Oryzanol contents of southern US rice (Jul 2003)
Last Modified: 9/20/2013
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