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United States Department of Agriculture

Agricultural Research Service

Research Project: SMALL FRUIT AND ORNAMENTAL GENETIC RESEARCH FOR THE MID-SOUTH

Location: Southern Horticultural Research

Title: Transcriptome sequencing of flowering dogwood (Cornus florida) for development of EST-SSRs

Authors
item Wadl, Phillip -
item RINEHART, TIMOTHY
item SCHEFFLER, BRIAN
item Trigiano, Robert -

Submitted to: Acta Horticulture Proceedings
Publication Type: Proceedings
Publication Acceptance Date: July 1, 2012
Publication Date: May 1, 2013
Citation: Wadl, P.A., Rinehart, T.A., Scheffler, B.E., Trigiano, R. 2013. Transcriptome sequencing of flowering dogwood (Cornus florida) for development of EST-SSRs. Acta Horticulture Proceedings. 990:265-270.

Interpretive Summary: The genus Cornus is commonly known as dogwoods and contains 58 species of trees, shrubs and herbs. Flowering dogwood, or C. florida, is considered the most popular and economically significant member of the genus in the nursery and landscape industry, although other species, such as C. alternifolia, C. elliptica, C. kousa, C. mas, C. nuttallii, and C. sericea, are sold in small numbers in the United States. Flowering dogwood is one of the most common flowering deciduous ornamental trees in the eastern US and is valued for its pink, red or white bracts, brilliant red fall foliage and bright red fruit. Breeding for improved dogwood trees presents unique challenges, such as long juvenility periods, obligate or nearly obligate outcrossing, and limited histories or pedigrees regarding genetic improvement. However, recent advances in molecular technologies, including relatively inexpensive genome sequencing, construction of various nucleic acid libraries, mapping of markers, and a myriad of profiling techniques, make discovery and utilization of molecular markers for desirable traits possible in specialty crops such as ornamental plants. Here we examine the usefulness of molecular markers for breeding and genetics of Cornus species.

Technical Abstract: The production and sales of ornamental plants are a large component of the worldwide economy. Introduction of new and improved ornamentals commonly occur via selection, but plant breeders are continually striving to develop new plants with superior ornamental qualities via conventional breeding. Breeding woody ornamental trees presents unique challenges, such as long juvenility periods, obligate or nearly obligate outcrossing breeding systems, and limited histories or pedigrees regarding genetic improvement. However, recent advances in molecular technologies, including relatively inexpensive genome sequencing, construction of various nucleic acid libraries, mapping of markers, and a myriad of profiling techniques, make discovery and utilization of molecular markers for desirable traits possible in specialty crops such as ornamental plants. To obtain more information on the flowering dogwood genome, a single custom, normalized library for Roche/454 sequencing was prepared and sequenced for bract (‘Cherokee Brave’) and leaf (‘Appalachian Spring’ and ‘Cherokee Brave’) tissue. The 1,621,644 reads were assembled into 63,029 unique sequences, comprising 42,946 isotigs (26,627 isogroups) and 20,083 singletons. Also, 5,670 expressed sequence tags (EST) – simple sequence repeats (SSRs) were identified from the data set. To demonstrate the usefulness of this EST resource for marker development, primers were designed for 2,998 of the EST-SSRs of which 94 were tested for amplification of loci in ‘Appalachian Spring’, ‘Cherokee Brave’, and two F1 breeding lines. Seventy-five of the loci amplified and 29 were polymorphic, from which 9 of the most polymorphic loci were selected and tested using 22 individuals representing 5 dogwood species. The number of alleles detected ranged from 3 to 10 and observed heterozygosity was 0.05 to 0.67. Cross species transfer was higher in the big – bracted dogwood species (C. elliptica and C. kousa) than in the non – bracted species (C. alternifolia and C. sericea) and principal coordinate analysis differentiated all of the species. This work confirms the applicability of flowering dogwood EST-SSRs for the breeding and genetics of flowering dogwood and other Cornus species. We expect to optimize more EST-SSRs in order to accelerate breeding of flowering dogwood cultivars with improved disease resistance, heat or drought tolerance, and other aesthetically appealing ornamental traits.

Last Modified: 9/10/2014
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