Genomics and Gene Discovery Site Logo
ARS Home About Us Helptop nav spacerContact Us En Espanoltop nav spacer
Printable VersionPrintable Version     E-mail this pageE-mail this page
Agricultural Research Service United States Department of Agriculture
Search
  Advanced Search
 
Programs and Projects
Subjects of Investigation
 

Research Project: GENETIC FOUNDATIONS FOR BIOENERGY FEEDSTOCKS

Location: Genomics and Gene Discovery

Title: COMPLETE SWITCHGRASS GENETIC MAPS REVEAL SUBGENOME COLLINEARITY, PREFERENTIAL PAIRING, AND MULTILOCUS INTERACTIONS

Authors
item Okada, Miki
item Lanzatella-Craig, Christina
item Saha, Malay -
item Bouton, Joe -
item Wu, Rongling -
item Tobias, Christian

Submitted to: Genetics
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: April 7, 2010
Publication Date: July 1, 2010
Citation: Okada, M., Lanzatella-Craig, C., Saha, M., Bouton, J., Wu, R., Tobias, C.M. 2010. Complete Switchgrass Genetic Maps Reveal Subgenome Collinearity, Preferential Pairing and Multilocus Interactions. Genetics. 185:745-760.

Interpretive Summary: This article represents a linkage map to the switchgrass genome. It was able to clearly distinguish the two subgenomes resulting from whole genome duplication that resulted in the current tetraploid status of the mapping parents. It demonstrates that the two genomes do not readily exchange genetic information. It also clearly shows that the genomes of switchgrass and other grasses are highly collinear. These facts and availability of this map should assist plant breeders in creating better cultivars through more efficient selection.

Technical Abstract: Switchgrass (Panicum virgatum L.) is being developed as a bioenergy feedstock because it is a high-yielding perennial appropriate for marginal cropland. Switchgrass linkage maps were constructed as a step toward identification of loci underlying quality and yield using simple sequence repeat and sequence tagged markers. Parental maps were created following a two-way pseudo-testcross strategy with segregating single-dose markers in a full-sib family of 238 individuals. These maps coalesced into 18 linkage groups arranged into nine homoeologous pairs. The framework map length and total number of framework and accessory markers were 1376 cM and 563 in the female map and 1645 cM and 541 in the male map. Both framework maps were estimated to place 97 % of the genome within 10 cM of a mapped marker. Near complete preferential pairing was inferred from the ratio of coupling to repulsion phase linkages. Comparative analysis of each homology group to the related sorghum genome identified clear syntenic relationships and collinear tracts. Transmission distorted markers were 3 and 14 % of the single-dose markers in female and male parent, respectively. The male parent is also likely to carry one translocation, detected as the excess of parental genotypic classes between unlinked marker pairs.

   

 
Project Team
Anderson, Olin
Tobias, Christian
Vogel, John
Gu, Yong
 
Publications
   Publications
 
Related National Programs
  Bioenergy (213)
  Pasture, Forage and Rangeland Systems (215)
  Plant Genetic Resources, Genomics and Genetic Improvement (301)
 
Related Projects
   DEVELOPMENT OF GRASS GENOMIC RESOURCES FOR CROP IMPROVEMENT AND BIOFUEL RESEARCH
   PHENOMIC ANALYSIS OF NATURAL AND INDUCED VARIATION IN BRACHYPODIUM DISTACHYON
   PHENOMIC ANALYSIS OF BRACHYPODIUM DISTACHYON
   COLLECTION AND CHARACTERIZATION OF BRACHYPODIUM DISTACHYON GERMPLASM
   BRACHYPODIUM DISTACHYON GERMPLASM COLLECTION AND CHARACTERIZATION
   Insertional Mutagenesis of Brachypodium Distachyon (FY 2012-FY 2014)
   EXPANDING THE BREEDER'S TOOLBOX FOR PERENNIAL GRASSES
 
 
Last Modified: 05/24/2013
ARS Home | USDA.gov | Site Map | Policies and Links 
FOIA | Accessibility Statement | Privacy Policy | Nondiscrimination Statement | Information Quality | USA.gov | White House