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United States Department of Agriculture

Agricultural Research Service

Research Project: EPIDEMIOLOGY AND MANAGEMENT OF XYLELLA FASTIDIOSA (XF) AND OTHER EXOTIC AND INVASIVE DISEASES AND INSECT PESTS

Location: Crop Diseases, Pests and Genetics

Title: Hyper-variation of Tandem Repeats at the PD0218 (pspB) locus of Xylella fastidiosa Almond Leaf Scorch and Grape Pierce’s Disease Strains

Authors
item Chen, Jianchi
item Civerolo, Edwin
item Tubajika, Kayimbi
item Livingston, S. - UC DAVIS
item Higbee, B. - PARAMOUNT FARMING CO.

Submitted to: Applied and Environmental Microbiology
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: April 15, 2008
Publication Date: May 2, 2008
Citation: Chen, J., Civerolo, E.L., Tubajika, K.M., Livingston, S., Higbee, B. 2008. Hyper-variation of Tandem Repeats at the PD0218 (pspB) locus of Xylella fastidiosa Almond Leaf Scorch and Grape Pierce’s Disease Strains. Applied and Environmental Microbiology. 74:3652-3657.

Interpretive Summary: Xylella fastidiosa is a bacterial pathogen causing almond leaf scorch disease and grape Pierce’s disease in California. Knowledge of how the pathogen interacts with its environment will provide important clues for effective disease control. In this study, we identified a protease gene in the genome of X. fastidiosa and evaluated tandem repeat variation using 116 bacterial strains collected from California almond orchards and vineyards in seven locations. We conclude that X. fastidiosa possesses a mechanism to change the length of the protease gene, possibly to cope with environmental change.

Technical Abstract: Xylella fastidiosa is a Gram negative plant pathogenic bacterium that causes almond leaf scorch disease (ALSD) and grape Pierce’s disease (PD) in California. A-genotype strains cause ALSD only. G-genotype strains cause both PD and ALSD. Little is known about how X. fastidiosa interacts with the environment. In this study, we identified a putative protease encoding locus, PD0218 (pspB), in the genome of X. fastidiosa and evaluated genetic variation that may affect gene expression or function. PD0218 contains tandem repeats of ACDCCA at the 5’ end, corresponding to TP (threonine and proline) at the N-terminus of the protein. Comparative sequence analyses of 116 X. fastidiosa ALSD and PD strains collected from seven locations in California showed that the tandem repeat numbers (TRNs) ranged from 10 to 48, suggesting that X. fastidiosa possesses a mechanism of contracting and expanding the number of tandem repeats. Differences in pspB protease gene length may be in response to different environmental conditions encountered by X. fastidiosa strains. The hyper-variable nature of TRNs indicates that estimates of genetic variation among X. fastidiosa strains based on the pspB locus may overestimate diversity in the bacterial population.

Last Modified: 8/27/2014
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