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ARS Home » Midwest Area » Lexington, Kentucky » Forage-animal Production Research » Research » Publications at this Location » Publication #250370
Title: Visualizing and Sharing Results in Bioinformatics Projects: GBrowse and GenBank Exports

Author
item ARNAOUDOVA, ELISSAVETA - University Of Kentucky
item BOWENS, PHILIP - University Of Kentucky
item CHUI, ROGER - University Of Kentucky
item Dinkins, Randy
item HESSE, ULJANA - University Of Kentucky
item JAROMCZYK, JERZY - University Of Kentucky
item MARTIN, MITCHELL - University Of Kentucky
item MAYNARD, PAUL - University Of Kentucky
item MOORE, NEIL - University Of Kentucky
item SCHARDL, CHRIS - University Of Kentucky

Submitted to: BMC Bioinformatics
Publication Type: Abstract Only
Publication Acceptance Date: 3/20/2009
Publication Date: 6/25/2009
Citation: Arnaoudova, E.G., Bowens, P.J., Chui, R.G., Dinkins, R.D., Hesse, U., Jaromczyk, J.W., Martin, M., Maynard, P., Moore, N., Schardl, C.L. 2009. Visualizing and Sharing EResults in Bioinformatics Porjects: GBrowse and GenBank Exports. BMC Bioinformatics. 10(7. A4):1471-2105.

Interpretive Summary:

Technical Abstract: Effective tools for presenting and sharing data are necessary for collaborative projects, typical for bioinformatics. In order to facilitate sharing our data with other genomics, molecular biology, and bioinformatics researchers, we have developed software to export our data to GenBank and combined the export utilities with our customized and augmented version of GBrowse. The GBrowse bioinformatics software provides a way for users to graphically view genomic feature data stored in a back-end database. GenBank is an open-access database, maintained by the National Center for Biotechnology Information (NCBI), containing annotated versions of all publicly available DNA sequences.